Detail information of Os11g0552000_circ_g.1


General Information
CircRNA Name Os11g0552000_circ_g.1
ID in PlantcircBase osa_circ_009610
Alias NA
Organism Oryza sativa
Position chr11: 20526675-20526869  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene Os11g0552000
Parent gene annotation Similar to Tyrosine/nicotianamine aminotransferases family prote
in. (Os11t0552000-01)
Parent gene strand -
Alternative splicing Os11g0552000_circ_igg.1
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   CT-GC
Number of exons covered Os11t0552000-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGCATTCTTTGTTGAATAAACTACAAATATCCTTGATTTTTGTTGTTGATTGCAACAATACTTG
TATGAAAAGGGTTTGAAGTTAAACTTAAACAACtaagagttgtttgaccgtttccaagggttag
gtttcagataataccaaaaagtggaagctatttcattaagcttagattgctgctagtctgcaat
atc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TAAGAGTTGTTTGACCGTTTCCAAGGGTTAGGTTTCAGATAATACCAAAAAGTGGAAGCTATTT
CATTAAGCTTAGATTGCTGCTAGTCTGCAATATCTGCATTCTTTGTTGAATAAACTACAAATAT
CCTTGATTTTTGTTGTTGATTGCAACAATACTTGTATGAAAAGGGTTTGAAGTTAAACTTAAAC
AAC
Conservation Information
Conserved circRNAs NA
PMCS 0.355067155
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017