Detail information of BGIOSGA032653_circ_igg.1


General Information
CircRNA Name BGIOSGA032653_circ_igg.1
ID in PlantcircBase osi_circ_008837
Alias Chr10:7798093_7799334(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 5797297-5798538  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-AA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTAATGTTTTGTTGGGCATGGTAGCACGCCAGCACTTACGTTATGCTCGCCAGACAAACCTTCA
GAGGGAAAAACTATATTGGCCACTATAGGAAATCAGggtgaagaagggaagcccatggtgatgc
ggaagcatctgtcaatggtggcctttaacaacatcacacggctgaccttcgggaagcggttcat
agatgccg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTGAAGAAGGGAAGCCCATGGTGATGCGGAAGCATCTGTCAATGGTGGCCTTTAACAACATCA
CACGGCTGACCTTCGGGAAGCGGTTCATAGATGCCGCTGGCGAGCTGGACGAGCAAGGGAGCGA
GCTGAAGGCGATCGTGAACAACGGGATCAAGATCGGCGCGTCGCTGACCATCGCAGAGCACATC
CGGGTGCTGCGGTGGCTGAACCCGGTGGACGAGGAGCTCTATAACGCCCACAGCGCAAGGCGAG
ACCGCTTCACCAGGCGGATCATGGACGAGCATGCCCGTGAGCTCGAGCGTCACGGTGCCAAACA
GCACTTCGTCGACGCCCTGTTCACCCTCAGGGACAAGTACGACCTCAGCGACGACACCGTCATC
GGCCTCCTCTGGGATATGATTACCGCCGGCACGGACACGACGGTGATAACGGTGGAGTGGGCGA
TGGCGGAGCTGGCGAGGAATCCAAGGGTGCAGATGAAGGCGCAAGAGGAGCTGGACCGCGTCAT
CGGCCGCGGTCGCGTCATGTTGGAGGCAGACATCCCGAACTTGCCCTACCTGCAGGCCGTCGTG
AAGGAGTCGTTCCGGCTGCACCCACCGACGCCGCTGATGCTCCCGCACAAGGCCAGCACCAGCG
TCAAGATCGCCGGCTACGATGTCCCAAAGGACGCCAGCGTCGTCGTCAACGTGTGGGCCGTAGC
ACGTGACCCCGGTGTCTGGGACAACCCGCTCGAGTACCGGCCGGAGCGGTTCCTCGAGGAGAGC
ATTGACATCAAGGGCAGCGACTACCGCGTCCTCCCCTTCGGCGCTGGCCGTCGGGTGTGCCCCG
GCGCGCAGCTCGGGATCAGCCTCGTAGCATCCATGATCGGCCACCTGCTGCACCAGTTCACATG
GGCGCTGCCAGACGGGACACGGCCGGAGGACCTCGACATGATGGAGTCCCCAGGGCTCGTCACC
TTCATGGCAACGCCGTTGCAGGTTGTTGCCATGCCACGCCTCGACAAGGAGGAGCTGTTCAAGC
GAGTGCCAGTCGACATGTCCTGATCGACCTGCCGGTCATTCCCAAATACAAGGGGCAGAACAAG
GTCCTGGATAAACCTAGGTCCGTTCAGCATATGAATCGACATCCAAGGACATTGTTAATGTTTT
GTTGGGCATGGTAGCACGCCAGCACTTACGTTATGCTCGCCAGACAAACCTTCAGAGGGAAAAA
CTATATTGGCCACTATAGGAAATCAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021