Plant Circular RNA Database

Detail information of Os02g0786000_circ_g.3

			
						 General Information
					
						CircRNA Name
						Os02g0786000_circ_g.3
					
						ID in PlantcircBase
						osa_circ_016844
					
						Alias
						Os_ciR4672
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 33375166-33377772  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							Os02g0786000						
					
						Parent gene annotation
						
							Similar to predicted protein. (Os02t0786000-01)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os02g0786000_circ_g.4 						
					
						Support reads
						4
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os02t0786000-01:7

General Information
CircRNA Name	Os02g0786000_circ_g.3
ID in PlantcircBase	osa_circ_016844
Alias	Os_ciR4672
Organism	Oryza sativa
Position	chr2: 33375166-33377772 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	find_circ
Parent gene	Os02g0786000
Parent gene annotation	Similar to predicted protein. (Os02t0786000-01)
Parent gene strand	+
Alternative splicing	Os02g0786000_circ_g.4
Support reads	4
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os02t0786000-01:7

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GAAACTTTCCAGAATACATGGATGTTGTAGTCAGTGTTGCTAGGAAAACTGATGGTCGGCACTG
GGCAGATCTTTTCCATGCAGCTGGACGATCCACAGAgtatgagcttctctttttcccaagatat
caccttgattatagctcattactttaccggaaatcacttcttggtcgaccaattgtcatggatg
tcttccag

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							GTATGAGCTTCTCTTTTTCCCAAGATATCACCTTGATTATAGCTCATTACTTTACCGGAAATCA
CTTCTTGGTCGACCAATTGTCATGGATGTCTTCCAGGACTACATACTTGTTACCTACAGTCCAT
TTGATGTGCATATTTTCCATGTGGTGATATCAGGAGAATTGTCACCTGCTAGTAGTCCTGTTTT
ACAGGTGAAGCAAAATATTTTCAACCACTGCACCGAATGTGTTGTCCATTTCATTTGACCTTGT
TGTTTTCTTTGGGTCAGCAGCTTTCAACAGTCCGAGAACTTTCAATCATGAGTCCAAAGAGTCC
ACCTGTTTCGATGCGCTTCATTCCTGAACCAACTGATGAAGGAAAGCCGAAACATGATACTAAT
GGATCTTCTGACTTGTCCCAACAACCTTCAAGGTACTTTTTTCAAATGTTAAAATTGTAAATGA
TTTCTATTCTCCTTAATTTTTATTTGTTTTGTTATATATATTTCAGATGCCTAATCTTGCGGAT
GAATGGGGAACTTTCTGTGTTGGACATGGATGATGGACATGAACAATCACTTACTAATTCAGTT
GAATTATTTTGGGTCACTTGTTCCCAATACGAAGAGAAGGGTAATCTTATCAAAGAGGTTTCAT
GGCTTGACTATGGCCATAAGGGGATGCAGGTTAGTTTTATTGTTTTCTTCTTTATTATTTTTAA
GGAATTATGCTTGTCTCTCTTAATAGATCGAACATCTTTCCACATCTTGCTATCCTTTTATCCA
ACCCTTCTCTTTTTTTTTGGCAGGTGTGGTACCCATCCCATGGAGAAAATCCTTTTAAACAAGA
AGATTTCTTGCAGGTACAGATTTTGTATCTTGTGATAGTATTGACATCTCTTTTGAGTTTTGCG
ATCCACTCTGTGAATTTATCAATTTTTTTTGGGGAAAAACTTGATCAAAATCATAATAGTTTCA
TATGTTGTTTTCTTTCTTGCATTGAACTCTTATTGGTGGTAGTATTCAAAGTTAATGGAGAACA
TGCTATTTGTTTCTGCAGCTGGATCCGGAGCTTGAATTTGACCGTGAGGTGTATCCGCTTGGTC
TTCTTCCAAATGTTGGTGTAGTTGTTGGTATTTCTCAGAGAATGTCCTTCTCGACTGCAGAGTT
TCCATGCTTTGAACCTTCTCCTCAAGCCCAAACAATATTGCATTGTTTGCTGCGGCATCTCCTT
CAGGTAAATCAAAACATAATTCTTTTTATATAGAAATGCTATATATAGGAACTATATGACATTA
ATGCAAGAAGAGTGGTAAATCATGAAATCTTCATTTAGTCAAGAAAATTTGACTCCTAGTAATA
TTACACGTGAAATTGAGTTCTCACTAAGGATTATGTGATGGTGCAAACCAAGCGAAAAACCTGT
TTATTGTCATGGTTAAATAGAAAATGACCTGATTTCTTATCAAGACTGACGTGAGCACCCAAAG
TGGTCTGCCACCATTTATTGTTATTTGAGCATCTAAACCTTGTTTCAGGCCACTAGTTTTAATT
TGTATAAAGGTGTCTCTATTCTGTTGCTCTGCTGGCTGAATGAACCAATTCACTAGGTTGTGCG
CATTTGTTCATCATTTTCCTTTGGTTCTTCCACCTTTTCTCTGCACTTTTTAGTATTCCGTAGA
ACTCATTGCTGAAACAAGAAGAGTATAGGTTTTATGGGTTGTTGGCCATACTTGTTCTTTCCTC
TGGTTTAGTCCGTTTATATGAGATCCTCTTTTGTAACAATTTACAAACCACTGCACTGTCATGT
AGTTTCTCATATAGTTTCTATATTGTAATATCTTCCTTTGCCGAGTTGTGCTGCAAGACATTTT
GTTTGTTGCGAATCTAGCACTTACCTAGCTCTTCTATCAATCACTTCTGTAAAGGGATCGAAAT
ATTATATTCTGAAATTTCTATTAAAAGAAACAGTTTTCACATAGAATAAGCCATATGTATTATG
AACCATAGCCTTGGGAAAAAAAAACATTTTTTTTTCACTTTGAATATCCCCTGTTTACAGGGAG
CCTTTACTTGGCTACTTGCATCATTTTATGTATTATGGACCATTAACTATGCATGGTTTGCCAA
ACTCATATGGCAATAATCATTTCCCTATGCATCTCTCATTCTGTAAAATTTTTGAAACCAGAGA
GACAAACATGAAGAAGCTCTGCGTTTGGCAAACTTGTCTGCAGAGAAACCTCACTTCTCTAGAT
GTTTGGAATGGCTCCTGTTTACGGTATTTGATGCAGAGATATCAAGGTATATTGGTTCTAACTT
GGTAATGGTAGCATTCTTGCATTATTTGTGTACCGAGTTGCTAGATTTCATTCTATTGTGTTAT
TTGCTGAAATATTATTCTGTATCCTATTTTCTGGTGGCTTTTTTTGCCAATTGCAGCCAAAGTG
CTTCAAAAAACCAGCTTTCGCAGAAAAATGAACCTGCAAAGAAGTCTCTTCTAGACAAGACATG
TGACCTACTTCGAAACTTTCCAGAATACATGGATGTTGTAGTCAGTGTTGCTAGGAAAACTGAT
GGTCGGCACTGGGCAGATCTTTTCCATGCAGCTGGACGATCCACAGA
						
					

			
		

Sequences
Splice junction sequence	GAAACTTTCCAGAATACATGGATGTTGTAGTCAGTGTTGCTAGGAAAACTGATGGTCGGCACTG GGCAGATCTTTTCCATGCAGCTGGACGATCCACAGAgtatgagcttctctttttcccaagatat caccttgattatagctcattactttaccggaaatcacttcttggtcgaccaattgtcatggatg tcttccag
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GTATGAGCTTCTCTTTTTCCCAAGATATCACCTTGATTATAGCTCATTACTTTACCGGAAATCA CTTCTTGGTCGACCAATTGTCATGGATGTCTTCCAGGACTACATACTTGTTACCTACAGTCCAT TTGATGTGCATATTTTCCATGTGGTGATATCAGGAGAATTGTCACCTGCTAGTAGTCCTGTTTT ACAGGTGAAGCAAAATATTTTCAACCACTGCACCGAATGTGTTGTCCATTTCATTTGACCTTGT TGTTTTCTTTGGGTCAGCAGCTTTCAACAGTCCGAGAACTTTCAATCATGAGTCCAAAGAGTCC ACCTGTTTCGATGCGCTTCATTCCTGAACCAACTGATGAAGGAAAGCCGAAACATGATACTAAT GGATCTTCTGACTTGTCCCAACAACCTTCAAGGTACTTTTTTCAAATGTTAAAATTGTAAATGA TTTCTATTCTCCTTAATTTTTATTTGTTTTGTTATATATATTTCAGATGCCTAATCTTGCGGAT GAATGGGGAACTTTCTGTGTTGGACATGGATGATGGACATGAACAATCACTTACTAATTCAGTT GAATTATTTTGGGTCACTTGTTCCCAATACGAAGAGAAGGGTAATCTTATCAAAGAGGTTTCAT GGCTTGACTATGGCCATAAGGGGATGCAGGTTAGTTTTATTGTTTTCTTCTTTATTATTTTTAA GGAATTATGCTTGTCTCTCTTAATAGATCGAACATCTTTCCACATCTTGCTATCCTTTTATCCA ACCCTTCTCTTTTTTTTTGGCAGGTGTGGTACCCATCCCATGGAGAAAATCCTTTTAAACAAGA AGATTTCTTGCAGGTACAGATTTTGTATCTTGTGATAGTATTGACATCTCTTTTGAGTTTTGCG ATCCACTCTGTGAATTTATCAATTTTTTTTGGGGAAAAACTTGATCAAAATCATAATAGTTTCA TATGTTGTTTTCTTTCTTGCATTGAACTCTTATTGGTGGTAGTATTCAAAGTTAATGGAGAACA TGCTATTTGTTTCTGCAGCTGGATCCGGAGCTTGAATTTGACCGTGAGGTGTATCCGCTTGGTC TTCTTCCAAATGTTGGTGTAGTTGTTGGTATTTCTCAGAGAATGTCCTTCTCGACTGCAGAGTT TCCATGCTTTGAACCTTCTCCTCAAGCCCAAACAATATTGCATTGTTTGCTGCGGCATCTCCTT CAGGTAAATCAAAACATAATTCTTTTTATATAGAAATGCTATATATAGGAACTATATGACATTA ATGCAAGAAGAGTGGTAAATCATGAAATCTTCATTTAGTCAAGAAAATTTGACTCCTAGTAATA TTACACGTGAAATTGAGTTCTCACTAAGGATTATGTGATGGTGCAAACCAAGCGAAAAACCTGT TTATTGTCATGGTTAAATAGAAAATGACCTGATTTCTTATCAAGACTGACGTGAGCACCCAAAG TGGTCTGCCACCATTTATTGTTATTTGAGCATCTAAACCTTGTTTCAGGCCACTAGTTTTAATT TGTATAAAGGTGTCTCTATTCTGTTGCTCTGCTGGCTGAATGAACCAATTCACTAGGTTGTGCG CATTTGTTCATCATTTTCCTTTGGTTCTTCCACCTTTTCTCTGCACTTTTTAGTATTCCGTAGA ACTCATTGCTGAAACAAGAAGAGTATAGGTTTTATGGGTTGTTGGCCATACTTGTTCTTTCCTC TGGTTTAGTCCGTTTATATGAGATCCTCTTTTGTAACAATTTACAAACCACTGCACTGTCATGT AGTTTCTCATATAGTTTCTATATTGTAATATCTTCCTTTGCCGAGTTGTGCTGCAAGACATTTT GTTTGTTGCGAATCTAGCACTTACCTAGCTCTTCTATCAATCACTTCTGTAAAGGGATCGAAAT ATTATATTCTGAAATTTCTATTAAAAGAAACAGTTTTCACATAGAATAAGCCATATGTATTATG AACCATAGCCTTGGGAAAAAAAAACATTTTTTTTTCACTTTGAATATCCCCTGTTTACAGGGAG CCTTTACTTGGCTACTTGCATCATTTTATGTATTATGGACCATTAACTATGCATGGTTTGCCAA ACTCATATGGCAATAATCATTTCCCTATGCATCTCTCATTCTGTAAAATTTTTGAAACCAGAGA GACAAACATGAAGAAGCTCTGCGTTTGGCAAACTTGTCTGCAGAGAAACCTCACTTCTCTAGAT GTTTGGAATGGCTCCTGTTTACGGTATTTGATGCAGAGATATCAAGGTATATTGGTTCTAACTT GGTAATGGTAGCATTCTTGCATTATTTGTGTACCGAGTTGCTAGATTTCATTCTATTGTGTTAT TTGCTGAAATATTATTCTGTATCCTATTTTCTGGTGGCTTTTTTTGCCAATTGCAGCCAAAGTG CTTCAAAAAACCAGCTTTCGCAGAAAAATGAACCTGCAAAGAAGTCTCTTCTAGACAAGACATG TGACCTACTTCGAAACTTTCCAGAATACATGGATGTTGTAGTCAGTGTTGCTAGGAAAACTGAT GGTCGGCACTGGGCAGATCTTTTCCATGCAGCTGGACGATCCACAGA

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_012389 						
					
						PMCS
						0.248370592

Conservation Information
Conserved circRNAs	osi_circ_012389
PMCS	0.248370592

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							33375252-33377769(+)
33377725-33375317(+)
33375214-33377714(-)
						
					

						Potential amino acid sequence
						
							MDVFQDYILVTYSPFDVHIFHVVISGELSPASSPVLQLSTVRELSIMSPKSPPVSMRFIPEPTD
EGKPKHDTNGSSDLSQQPSRCLILRMNGELSVLDMDDGHEQSLTNSVELFWVTCSQYEEKGNLI
KEVSWLDYGHKGMQVWYPSHGENPFKQEDFLQLDPELEFDREVYPLGLLPNVGVVVGISQRMSF
STAEFPCFEPSPQAQTILHCLLRHLLQRDKHEEALRLANLSAEKPHFSRCLEWLLFTVFDAEIS
SQSASKNQLSQKNEPAKKSLLDKTCDLLRNFPEYMDVVVSVARKTDGRHWADLFHAAGRSTEYE
LLFFPRYHLDYSSLLYRKSLLGRPIVMDVFQDYILVTYSPFDVHIFHVVISGELSPASSPVLQL
STVRELSIMSPKSPPVSMRFIPEPTDEGKPKHDTNGSSDLSQQPSRCLILRMNGELSVLDMDDG
HEQSLTNSVELFWVTCSQYEEKGNLIKEVSWLDYGHKGMQVWYPSHGENPFKQEDFLQLDPELE
FDREVYPLGLLPNVGVVVGISQRMSFSTAEFPCFEPSPQAQTILHCLLRHLLQRDKHEEALRLA
NLSAEKPHFSRCLEWLLFTVFDAEISSQSASKNQLSQKNEPAKKSLLDKTCDLLRNFPEYMDVV
VSVARKTDGRHWADLFHAAGRSTEYELLFFPRYHLDYSSLLYRKSLLGRPIVMDVFQDYILVTY
SPFDVHIFHVVISGELSPASSPVLQLSTVRELSIMSPKSPPVSMRFIPEPTDEGKPKHDTNGSS
DLSQQPSRCLILRMNGELSVLDMDDGHEQSLTNSVELFWVTCSQYEEKGNLIKEVSWLDYGHKG
MQVWYPSHGENPFKQEDFLQLDPELEFDREVYPLGLLPNVGVVVGISQRMSFSTAEFPCFEPSP
QAQTILHCLLRHLLQRDKHEEALRLANLSAEKPHFSRCLEWLLFTVFDAEISSQSASKNQLSQK
NEPAKKSLLDKTCDLLRNFPEYMDVVVSVARKTDGRHWADLFHAAGRSTEYELLFFPRYHLDYS
SLLYRKSLLGRPIVMDVFQDYILVTYSPFDVHIFHVVISGELSPASSPVLQLSTVRELSIMSPK
SPPVSMRFIPEPTDEGKPKHDTNGSSDLSQQPSRCLILRMNGELSVLDMDDGHEQSLTNSVELF
WVTCSQYEEKGNLIKEVSWLDYGHKGMQVWYPSHGENPFKQEDFLQLDPELEFDREVYPLGLLP
NVGVVVGISQRMSFSTAEFPCFEPSPQAQTILHCLLRHLLQRDKHEEALRLANLSAEKPHFSRC
LEWLLFTVFDAEISSQSASKNQLSQKNEPAKKSLLDKTCDLLRNFPEYMDVVVSVARKTDGRHW
ADLFHAAGRST(+)
MVGTGQIFSMQLDDPQSMSFSFSQDITLIIAHYFTGNHFLVDQLSWMSSRTTYLLPTVHLMCIF
SMW*(+)
MSYNQGDILGKREAHTLWIVQLHGKDLPSADHQFS*(-)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	33375252-33377769(+) 33377725-33375317(+) 33375214-33377714(-)
Potential amino acid sequence	MDVFQDYILVTYSPFDVHIFHVVISGELSPASSPVLQLSTVRELSIMSPKSPPVSMRFIPEPTD EGKPKHDTNGSSDLSQQPSRCLILRMNGELSVLDMDDGHEQSLTNSVELFWVTCSQYEEKGNLI KEVSWLDYGHKGMQVWYPSHGENPFKQEDFLQLDPELEFDREVYPLGLLPNVGVVVGISQRMSF STAEFPCFEPSPQAQTILHCLLRHLLQRDKHEEALRLANLSAEKPHFSRCLEWLLFTVFDAEIS SQSASKNQLSQKNEPAKKSLLDKTCDLLRNFPEYMDVVVSVARKTDGRHWADLFHAAGRSTEYE LLFFPRYHLDYSSLLYRKSLLGRPIVMDVFQDYILVTYSPFDVHIFHVVISGELSPASSPVLQL STVRELSIMSPKSPPVSMRFIPEPTDEGKPKHDTNGSSDLSQQPSRCLILRMNGELSVLDMDDG HEQSLTNSVELFWVTCSQYEEKGNLIKEVSWLDYGHKGMQVWYPSHGENPFKQEDFLQLDPELE FDREVYPLGLLPNVGVVVGISQRMSFSTAEFPCFEPSPQAQTILHCLLRHLLQRDKHEEALRLA NLSAEKPHFSRCLEWLLFTVFDAEISSQSASKNQLSQKNEPAKKSLLDKTCDLLRNFPEYMDVV VSVARKTDGRHWADLFHAAGRSTEYELLFFPRYHLDYSSLLYRKSLLGRPIVMDVFQDYILVTY SPFDVHIFHVVISGELSPASSPVLQLSTVRELSIMSPKSPPVSMRFIPEPTDEGKPKHDTNGSS DLSQQPSRCLILRMNGELSVLDMDDGHEQSLTNSVELFWVTCSQYEEKGNLIKEVSWLDYGHKG MQVWYPSHGENPFKQEDFLQLDPELEFDREVYPLGLLPNVGVVVGISQRMSFSTAEFPCFEPSP QAQTILHCLLRHLLQRDKHEEALRLANLSAEKPHFSRCLEWLLFTVFDAEISSQSASKNQLSQK NEPAKKSLLDKTCDLLRNFPEYMDVVVSVARKTDGRHWADLFHAAGRSTEYELLFFPRYHLDYS SLLYRKSLLGRPIVMDVFQDYILVTYSPFDVHIFHVVISGELSPASSPVLQLSTVRELSIMSPK SPPVSMRFIPEPTDEGKPKHDTNGSSDLSQQPSRCLILRMNGELSVLDMDDGHEQSLTNSVELF WVTCSQYEEKGNLIKEVSWLDYGHKGMQVWYPSHGENPFKQEDFLQLDPELEFDREVYPLGLLP NVGVVVGISQRMSFSTAEFPCFEPSPQAQTILHCLLRHLLQRDKHEEALRLANLSAEKPHFSRC LEWLLFTVFDAEISSQSASKNQLSQKNEPAKKSLLDKTCDLLRNFPEYMDVVVSVARKTDGRHW ADLFHAAGRST(+) MVGTGQIFSMQLDDPQSMSFSFSQDITLIIAHYFTGNHFLVDQLSWMSSRTTYLLPTVHLMCIF SMW(+) MSYNQGDILGKREAHTLWIVQLHGKDLPSADHQFS(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015

circRNA

Detail information of Os02g0786000_circ_g.3

Address

Any questions?

Supported by