Detail information of BGIOSGA035271_circ_g.1


General Information
CircRNA Name BGIOSGA035271_circ_g.1
ID in PlantcircBase osi_circ_009024
Alias Chr11:18930711_18932246(ZS97RS2), Chr11:18860428_18861609(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr11: 13610124-13611065  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ie-circRNA
Identification method CIRI2, CIRI2
Parent gene BGIOSGA035271
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   NN-CA
Number of exons covered BGIOSGA035271-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTTCTAGTGTTGGCTTAGCACATAGGGAAGAAGGTGATCTAGGTCCAGTTTATGGATTTCAATG
GCGACACTTTGGTGCTGAGTAAGTTTTTCTCTCGCCgaaggtattttggaggggtgttgttgaa
gaactcctgtggttcatcagtggctcgacaagtgcaaaggtgcttctgcttaaaatttaatatt
tcattgga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAAGGTATTTTGGAGGGGTGTTGTTGAAGAACTCCTGTGGTTCATCAGTGGCTCGACAAGTGCA
AAGGTGCTTCTGCTTAAAATTTAATATTTCATTGGAAATGTTATATCCATACGCAATCTATATA
CTGTCTCGATGCTTTAAATTACTTATCCAGACGAGCCATGAATGCTTATCAGCCTAAAACTGGA
TCCTCGTGTTCTTTTTCATCATATGTCCATGCACAAATAAAGCCCATGATGTTATCTTGTCTAT
AGCAACTCCAACATGTAATTTTGCAGCTCTAACAATCTTAGAGTAATTTTACACCAGGAAAATC
TCATATGACCGATTGTTCAAATTCAGTGCGATATTTATTTACCTGTGCAGTCTGGTCTATTTAT
TCAGAAGGGCCTCAATTACAAGCTTGGCAAAAGCCTGATGGAAGTTTATGTTGTCCCTAGATAT
ATGAATATTTTCTGTGGGGTGGAAAACTTTTCTTTTCAATTTTTTGAGCGTTGACCATACTTAA
ATCACAGTTTTCTTTTCTTTTTCTGTTATGTAACTACTTTCTGCATCAGTTATGTTGGGTGTAT
CCATTAACTATTGCAGCAGATGAGGCATAAGTGAATATTGTTAGATTTTAGTTTCTTCACATGA
GCTCCCATGCTTACCACTTTGGTACAATGATACATTTTTCTACCTTCAGGTTTTACAAGAGAAA
GGCATTCATATTTGGGATGGCAATGCTTCGAGAGAGTATCTTGACAGGTATTTATCTTGGATCC
ACACTAGTCGAGAAACAATGGATATTGCTGTTCTTGGTTCTCGTGCTCTGATCCATTTGGCAAA
ATTTTACTGTGTTCTAGTGTTGGCTTAGCACATAGGGAAGAAGGTGATCTAGGTCCAGTTTATG
GATTTCAATGGCGACACTTTGGTGCTGAGTAAGTTTTTCTCTCGCC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021