Detail information of Os06g0130100_circ_g.1


General Information
CircRNA Name Os06g0130100_circ_g.1
ID in PlantcircBase osa_circ_029517
Alias NA
Organism Oryza sativa
Position chr6: 1606503-1610190  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os06g0130100
Parent gene annotation Receptor-like kinase (RLK), Drought and salt stress tolerance (O
s06t0130100-01);Oryza sativa stress-induced protein kinase gene
1.,Drought and salt stress tolerance.,Receptor-like kinase (RLK)
. (Os06t0130100-02);Similar to Stress-induced protein kinase. (O
s06t0130100-03)
Parent gene strand +
Alternative splicing Os06g0130100_circ_g.2 Os06g0130100_circ_g.3 Os06g0130100_circ_g.4 Os06g0130100_circ_g.5
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os06t0130100-03:2
Os06t0130100-02:20
Os06t0130100-01:20
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGATTATTTATCCTTAAGTGCATTTCAGGAATTTGTCATACAACAATTTATCTGGACATGTCCC
GATGGCAAAGAACTTCTCGAAATTCCCAATGGAAAGgaacttgtcaaatctaaacctaggaggt
gagatctcgccggccatcggagagctcaagaatctacagttcgtgtgagtacggatatgagtag
agagtact
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAACTTGTCAAATCTAAACCTAGGAGGTGAGATCTCGCCGGCCATCGGAGAGCTCAAGAATCTA
CAGTTCGTGTGAGTACGGATATGAGTAGAGAGTACTATTTCCCCTTGCTTTGCATCTACCTGAG
TTTTTGTGCATTTGACTAGCCTGTATTTTCTTTTTATAATCCTGCACACTTCACCTGATTTGAC
CCCTCATGCCATGATGTGACACAGTTCTTTACTATTTTACTTTAAGCCTGTGGATTTGCTCGCT
GATTAGTTTATTTGTGCTCTAATGATTTGCCTCTCTGCAGTGATCTCAAGGGGAACAAGCTCAC
TGGCCAAATCCCAGATGAGATTGGGGACTGCATCTCCTTAAAATATTTGTACTTCACCTAATCT
AAGTCTTCTTTTATTCTGTTACTTTTTGTAACAGGGTGTTCTAGCTAATTTTTTAATTGGGCTC
TTTTGATTCTTGCCATGCAGGGATTTGTCTGGCAACTTGCTGTATGGAGACATCCCCTTCTCCA
TCTCCAAGCTCAAGCAGCTTGAGGAGCTGTAAGCTCTACTTTTTTTAAATCTTTTCCTACCTTT
TCTTTAGCAAGAGCTATGGCCTATAGCTGTTGAGATATGGGCACTTCCTCTCCCTTCTTTGGAA
AGTTCAGGCTAATACTGAGACATCAGAGACTAATTGATTTACATTAAGTTTTGGAACATCTTGT
TCTAGAATCCAGATTATGATACTGAACATCTTGTTGGAGTAGTAGTAGTTTTTTTCATGGTTTT
GCGATGCTTGGGTTGTAGTGGTAACATTTTTTCTCTCTCATTTATTGATGCAGGATTTTGAAGA
ACAACCAGCTCACGGGACCCATCCCTTCCACATTGTCCCAAATTCCAAATCTCAAGACATTGTG
AGCCTCTTAGTACCTTACTCTATCCGTGACTATTTACTTCTTTGGGGTTCTTGGACAAACTGGG
TGATCTGACTTCTACTTGTTTAACTGTTTTTGTGTTATAATGTGCGTGCCACGGGAAACATGGC
TTGCTGTGTCATTTTTTGCATCTTAAGTACTACTAGTTCTTACTTACTGATAAAATCCTTCCTT
AATTATCTTGGAATAGGGACCTGGCACAGAACCAGCTTACAGGCGATATCCCAAGGCTCATATA
CTGGAATGAAGTTCTGCAATACCTGTAAGAATCCTATAAAAGAAAATTGTCTAACTGTTTTAGC
TGGTAGTATAAGAAGGTATTTTTCAGGCATTAACACTTTGCTTCTCTTAATCTTCAGAGGTTTG
AGGGGTAACTCACTGACTGGAACTTTGTCACCTGACATGTGCCAACTGACTGGCCTGTGGTACT
TGTAAGTCATCTCCTCTCCCTTTGGAGATGTTGCTGCATATTGTGCAACTTGGCCTTGTTGACA
GTGGTTACTGTTCTTAATCTACAGTGATGTAAGGGGAAACAATCTCACAGGGACCATTCCAGAG
AGCATAGGGAACTGCACCAGCTTTGAGATTCTGTATGTTCTTGCTAAGATTTCAGTAATATTTC
AGTGTTCATGAGTTTCAGACACCATAATGCGAGTTTCTTATTTGTATTGCAGGGACATTTCGTA
TAACCAAATCTCTGGAGAAATACCTTACAACATAGGCTTTCTTCAAGTAGCCACACTGTAAGTG
TTCCTGAGTTATTGCAAATCCTCTAACATGTAATCTGCTGTTTCACTCTTATGCATATAGATGC
TTTACTTACAGCCTTTATGTTGAACCATTTCTATTCATGTTCATAGGTCACTTCAAGGAAATAG
ACTGACTGGGAAAATTCCAGATGTGATTGGCCTGATGCAAGCTCTTGCTGTTCTGTGAGTAGAG
CACGACATTTCAATCCATAGGTTTTAGTAGTTTCTGTAATATTTTTTTGACTGAAATTCAGTAG
TTTCTGTAATATTGGATAATGAATTCTTATATTCATTTTTTTTATTCTCAGAGACCTGAGTGAG
AACGAGCTGGTAGGGCCCATTCCTTCTATACTGGGCAATCTATCCTATACTGGAAAACTGTTAG
TATCATCAGTCAGACTTTCTTTTTCACTGAGATTGCTTTCTTCTCTTCTCTAACACCTACTGTC
ACCTTTTCCTTCAGATATTTACATGGGAACAAACTTACTGGAGTCATACCGCCGGAGCTTGGGA
ACATGAGTAAACTTAGCTACCTGTAAGTGATTATATGGTATGCAGATATTGTTGTGCTCCAGTT
GGTGTGGAACACTATAAGATGTTCAGAAATTTTTCCATGCAGACAACTGAATGATAATGAATTG
GTGGGCACAATTCCAGCAGAGCTTGGCAAACTTGAAGAGCTTTTTGAACTGTAAGAAATTTTAT
CATGTCTATGAGTTACGTAGTATGCTTTATTTTATTCTGTGCAATTGTTGACCAAATTTTGCAT
GCAGAAATCTTGCCAACAACAATCTTCAAGGTCCTATTCCTGCAAACATCAGTTCTTGCACTGC
TCTAAACAAATTGTAAGTTAGCCGGTACTAAGTCAACTTATAAGTTAACAGGGCATTTTTTACT
CCACATGATTAAACATGTTTTTTTTTTGCCTCTCAGCAATGTTTATGGCAATAAGCTAAATGGT
TCTATTCCTGCTGGTTTCCAGAAGTTGGAGAGTCTGACTTACTTGTGAGTAATTGTATCTGTTG
CATTATGCTTACAGTAATCATTTAATTCACTCGGCGAAATTATTGTATTTCACCTAATGTTTTT
CTTGCTTAAAAATACATTTAAAAAATACAGGAACCTATCTTCAAACAATTTCAAAGGCAATATT
CCTTCTGAGCTTGGTCACATCATCAACTTGGACACATTGTAAGTAGAAACTTTAGCTATAATTA
TTTACCTGGTGTTACAAGACCTGTGGGCGCTAAATGATGTTCCTTTATTATTATTTTTTGAACA
GGGATCTTTCCTACAATGAATTCTCTGGACCAGTTCCTGCTACCATTGGTGATCTAGAGCACCT
TCTTGAACTGTATGTTGCGGACCAACCTCCTAGAAACCATACTGTTTTTAATGAAAAAACCATA
ACTTATTTCATATGGCCATTATTACTTGATGCCTAAATGGTTATGCTTTGACTGCAGGAATTTG
AGTAAGAACCATCTTGATGGGCCAGTTCCTGCTGAGTTTGGAAACTTGAGAAGCGTCCAAGTAA
TGTAAGTGTGTTCCCTTGAAACACATGTAACTAACTATTATCTGTTTGAAGCCATCCTATCATC
ATGATTCAGCTGAACCAAAATTTAAATTCTCAGTGATATGTCCAACAACAACTTATCTGGTAGT
CTGCCCGAGGAACTTGGACAACTTCAAAACCTTGATAGCCTGTGAGTTGTATATCATCATAAAT
TCATATTATGCGTGTGAGATCGAAAATCACCTAAATATTTTACTGAGCTATGGTGTTATCATGC
AGGATTCTTAACAACAACAATTTGGTTGGGGAGATCCCTGCTCAATTGGCCAACTGCTTCAGCT
TAAATAACCTGTAAGTTTTGTGTGCAAGCTCTGCTCTGTAGCATTGTATACTGGTGATAACTTG
GGCAGGATTATTTATCCTTAAGTGCATTTCAGGAATTTGTCATACAACAATTTATCTGGACATG
TCCCGATGGCAAAGAACTTCTCGAAATTCCCAATGGAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.251061135
Functional Information
Coding potential Y
Potential coding position 1607820-1606529(+)
1610157-1606529(+)
1608098-1610024(-)
Potential amino acid sequence MCQLTGLWYFDVRGNNLTGTIPESIGNCTSFEILDISYNQISGEIPYNIGFLQVATLSLQGNRL
TGKIPDVIGLMQALAVLDLSENELVGPIPSILGNLSYTGKLYLHGNKLTGVIPPELGNMSKLSY
LQLNDNELVGTIPAELGKLEELFELNLANNNLQGPIPANISSCTALNKFNVYGNKLNGSIPAGF
QKLESLTYLNLSSNNFKGNIPSELGHIINLDTLDLSYNEFSGPVPATIGDLEHLLELNLSKNHL
DGPVPAEFGNLRSVQVIDMSNNNLSGSLPEELGQLQNLDSLILNNNNLVGEIPAQLANCFSLNN
LAFQEFVIQQFIWTCPDGKELLEIPNGKELVKSKPRR*(+)
MAKNFSKFPMERNLSNLNLGGEISPAIGELKNLQFVDLKGNKLTGQIPDEIGDCISLKYLDLSG
NLLYGDIPFSISKLKQLEELILKNNQLTGPIPSTLSQIPNLKTLDLAQNQLTGDIPRLIYWNEV
LQYLGLRGNSLTGTLSPDMCQLTGLWYFDVRGNNLTGTIPESIGNCTSFEILDISYNQISGEIP
YNIGFLQVATLSLQGNRLTGKIPDVIGLMQALAVLDLSENELVGPIPSILGNLSYTGKLYLHGN
KLTGVIPPELGNMSKLSYLQLNDNELVGTIPAELGKLEELFELNLANNNLQGPIPANISSCTAL
NKFNVYGNKLNGSIPAGFQKLESLTYLNLSSNNFKGNIPSELGHIINLDTLDLSYNEFSGPVPA
TIGDLEHLLELNLSKNHLDGPVPAEFGNLRSVQVIDMSNNNLSGSLPEELGQLQNLDSLILNNN
NLVGEIPAQLANCFSLNNLAFQEFVIQQFIWTCPDGKELLEIPNGKELVKSKPRR*(+)
MSRISKLVQFPMLSGMVPVRLFPLTSKYHRPVSWHMSGDKVPVSELPLKPRYCRTSFQYMSLGI
SPVSWFCARSNVLRFGIWDNVEGMGPVSWLFFKISSSSCLSLEMEKGMSPYSKLPDKSKYFKEM
QSPISSGIWPVSLFPLRSTNCRFLSSPMAGEISPPRFRFDKFLSIGNFEKFFAIGTCPDKLLYD
KFLKCKVI*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017