Detail information of Zm00001d015851_circ_g.3


General Information
CircRNA Name Zm00001d015851_circ_g.3
ID in PlantcircBase zma_circ_008648
Alias zma_circ_0001863, GRMZM2G145376_C3
Organism Zea mays
Position chr5: 126275691-126278580  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method find_circ, CIRI2
Parent gene Zm00001d015851
Parent gene annotation Tubulin binding cofactor C domain-containing protein
Parent gene strand +
Alternative splicing Zm00001d015851_circ_g.1 Zm00001d015851_circ_g.2
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Zm00001d015851_T010:4
Zm00001d015851_T011:2
Zm00001d015851_T001:4
Zm00001d015851_T006:4
Zm00001d015851_T009:4
Zm00001d015851_T005:4
Zm00001d015851_T002:4
Zm00001d015851_T007:4
Zm00001d015851_T004:2
Zm00001d015851_T003:4
Zm00001d015851_T012:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTGCAGATTCCTAGTTGGTTTGGGGATGAAGGGCAAGAGCCTATAAACTGCAATCCTTTCCCA
CTGCCTGAAATTTATGAGGCATTCCAAAGCAAAAAGgttttgaactgtcatgattctgttatct
acatattagcaccactgaagtatgctactgtgtatggttgttctgatgctacggttgttcttgg
tgctgttg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 543
Transcript exons: 126275691-126275795,126277316-126277456,126277735-126277
938,126278488-126278580
GTTTTGAACTGTCATGATTCTGTTATCTACATATTAGCACCACTGAAGTATGCTACTGTGTATG
GTTGTTCTGATGCTACGGTTGTTCTTGGTGCTGTTGGTAAGGTAGTAAAAGTGGAGCATTGTGA
AAGAGTGCATATCATTGCAGCTGCAAAACGGATTTGTATTGCCAACTGCCGGGAGTGCATCTTC
TACCTAGGAGTAAATCACCAACCTCTTGTATTGGGGGACAACCATAAATTACAAGTTGCTCCAT
TCAATACATGCTACCCACAACTGCAGGATCATATGATGCAAGTGGGTGTTGATCCCAGTGTCAA
CAAATGGGACCAACCTTTTGTATTGGGAGTTGTGGATCCACATGATTCATTATCCCATCCTGCT
GGGGTTGCAGATGTTAAAGCTGAATCAGCAACATGTCTGGATCCTGATCTATTCACCAGTTTTT
TGATTCCTAGTTGGTTTGGGGATGAAGGGCAAGAGCCTATAAACTGCAATCCTTTCCCACTGCC
TGAAATTTATGAGGCATTCCAAAGCAAAAAG

Genomic sequence GTTTTGAACTGTCATGATTCTGTTATCTACATATTAGCACCACTGAAGTATGCTACTGTGTATG
GTTGTTCTGATGCTACGGTTGTTCTTGGTGCTGTTGGTAAGGTATGCATGTAATTCTATTTCTG
TTGTGGATTGAATTTTTTTCTGGTTACTCAGTTTTATTTTTGTCTGTCTTTTGTTTAAGAATGA
TTCCACTTGCTTCCTTGATAAGTCTGAAATGGATCTGCCATGGTTATCACGGTGTCGCCTAGGC
ACCAACTAGGCGTCCAGATGGCCATCCAGGGCGCCAGGCTCGCCGTGATGCGGCGCCTCGCCTG
AAGATGGCTAGGCGGACGTCTGAAGGTTAAGTTGTCGGGCGTGGACGCCTATGCGTCATCTAAT
GCCACCCAGTCGAGCGTCTAGGTTTAGTGATGTCAATAGGGCGCTGGTATTTAAGGCTGAAGAG
GGGAAAATCTGCCGCTGCCAGCCGCCGAAAACGCTTGCTCGCTCGACTCGCTCGCCGGGCACCG
AGGACGAATCCGCAGGACGCCGGTAATCCTCTCCCCCTCCTCCCCTTCCTGCTTTGCGACTCTG
CGCGGCGCTGCTAGCTTTGTCCGTGTAATCCTCGGCTCTGGCCGGTAATCCTTCGCTCTGGCCA
GTAATCCTTCGCTCTGGTCGGTAATCCTTCGCTCTGGTCGGTAATCCTCTGCTCTGGCCGCGCG
GCTCCGCTCCGCTCCGCCACTCCACTTTGCTGCACACCGTGCCACATCACGCTGCTGCGTGCCT
TGCTTATGCGCTGCTGTGCGCTCTGCTTTGCTTTGTGCGAGATGCTCTGCTTTGCTGTGCTGCT
GCGGGCTCTGCTTTGCTGTGGTTGCCTAACTATCGCCTAGGTGTCCAGGCGCCGCGGAGGCGAC
TCACCTTGCCGGGGCACCATGATAACTATGTGATCTGCCACCTGCCCGTTTTGGGCTACAGTGG
TTTTGTTCATACATATGTGATTCGTTGCTTTGCACTTATATAAGCTTTGCAGATAACACGCCAT
TGCTGTGGATATTTGTTATGTTCTGTAACATTTTAGTTGATGTCCAGCTGCAACAAAGGTTGTG
TCTGGTTAAAAGTTACAAGATTTAGTTCTCAAGGAATCGGACTACAGCAAGCTAGCAATCTGAT
TCTACTTTATGGTTGCAGTCTTGCAGAAATGCGTTGTAGATGATGTAGGTAACTGTTACCCTTC
TGCCTCTTATGATGGCGGTCCTGGGTTCTATCAGTTGTTGGGAGATATTCTGGGTTGTGTTGTG
TACGTGTTCTGAGCACCAATGCACACAAGGTGTTTTTTGTTGTAAATTATTAAGCCTTTTATGG
ACCATGGCTGTAGCCCCTTTTGTCATAGTACATTCCTTGCTATAAGAGTTGAAGACCTGTATCA
GAGAGACACTGGTGAAATTGAATCCTGAACCCATCTCTACTATTTGTCCTCCTATAGCTCTCCT
CTAATCCCCCACTCCCTTCTATTTCAGTACCTTCCCAGTCTATTCCAGTACTTAGTTATATTGG
TAAAACTTTAGCAACTCATAGTAAATTATTAACATTTTTTATTTATTGCAAAATGTTTTACATG
TCTACTTCGATTTTTATGCTGTCAGGTAGTAAAAGTGGAGCATTGTGAAAGAGTGCATATCATT
GCAGCTGCAAAACGGATTTGTATTGCCAACTGCCGGGAGTGCATCTTCTACCTAGGAGTAAATC
ACCAACCTCTTGTATTGGGGGACAACCATAAATTACAAGTAACTTTCTGTAGTTTATTTGCCTT
GTGCTCTTTTAAATGGCAGTGGTTGGGGCCTTGGGGGTGATGGTTTAAATAGTTTATTTTCCAT
CTCTTAAATGGATGGCTTGAATACAAGGTCTAAAGTCAATAATTGTACATAGTGTTTAGTACTC
ATGGTACATAGAAATATCAAACAAATGTGAAAGACAATATTGAACTCAGTGATGTGATTTACAC
AATACATTAGTATTTAATAATTAATATTCTCATGGTAAATTTTCTTGTTTGTATCATCAGGTTG
CTCCATTCAATACATGCTACCCACAACTGCAGGATCATATGATGCAAGTGGGTGTTGATCCCAG
TGTCAACAAATGGGACCAACCTTTTGTATTGGGAGTTGTGGATCCACATGATTCATTATCCCAT
CCTGCTGGGGTTGCAGATGTTAAAGCTGAATCAGCAACATGTCTGGATCCTGATCTATTCACCA
GTTTTTTGGTATGTTAAAAACATGCTTTAGGCTTTAGTCCTGTAAAGCGACACGAACACAGATA
CAATCAGTCTTCTATCGTTAAAGTTTCTTTTTCTCTGTTCTTGATGTGGTAAGAAAATATTGTT
TCTTGCCTAATTCATCCTGTCTGTTGCAATCGAGTATTGGGTTCATTCTGCAAATATGCCAGCT
GCATGCAGTAATTACAATGTGGCAACTTGAACCACCTGCTTGCTAGAATACTGGAGTCAGTTCT
TGATGCTTCCAACTGGAAAATGCATTTTAAGTGATGGGTTGTTTTTTTTAACAATGCATGAGAG
CTGTGCCATTCACCAAGAAAAAAAATACAAACTGTACGGGAAAAGGGAGAGGCCAAAGAAACTC
CCTCCCAATTACATCCCACACACTAATAGGAGACTAAGCTCTATAGCTAATAGAACTGCTGGTT
TTAATAAAAAAAGATTATTAAGTGACGCTGAAGCTGAACCTGTCATTTGCTTCATTTTTAATAG
CTAATAGAACTGTTTTTTAATAAAACATTAACTTTTCTTCTGCAGATTCCTAGTTGGTTTGGGG
ATGAAGGGCAAGAGCCTATAAACTGCAATCCTTTCCCACTGCCTGAAATTTATGAGGCATTCCA
AAGCAAAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.060125811
Functional Information
Coding potential Y
Potential coding position 126277778-126278577(+)
126275707-126277923(-)
Potential amino acid sequence MMQVGVDPSVNKWDQPFVLGVVDPHDSLSHPAGVADVKAESATCLDPDLFTSFLIPSWFGDEGQ
EPINCNPFPLPEIYEAFQSKKVLNCHDSVIYILAPLKYATVYGCSDATVVLGAVGKVVKVEHCE
RVHIIAAAKRICIANCRECIFYLGVNHQPLVLGDNHKLQVAPFNTCYPQLQDHMMQVGVDPSVN
KWDQPFVLGVVDPHDSLSHPAGVADVKAESATCLDPDLFTSFLIPSWFGDEGQEPINCNPFPLP
EIYEAFQSKKVLNCHDSVIYILAPLKYATVYGCSDATVVLGAVGKVVKVEHCERVHIIAAAKRI
CIANCRECIFYLGVNHQPLVLGDNHKLQVAPFNTCYPQLQDHMMQVGVDPSVNKWDQPFVLGVV
DPHDSLSHPAGVADVKAESATCLDPDLFTSFLIPSWFGDEGQEPINCNPFPLPEIYEAFQSKKV
LNCHDSVIYILAPLKYATVYGCSDATVVLGAVGKVVKVEHCERVHIIAAAKRICIANCRECIFY
LGVNHQPLVLGDNHKLQVAPFNTCYPQLQDHMMQVGVDPSVNKWDQPFVLGVVDPHDSLSHPAG
VADVKAESATCLDPDLFTSFLIPSWFGDEGQEPINCNPFPLPEIYEAFQSKK(+)
MTVQNLFALECLINFRQWERIAVYRLLPFIPKPTRNQKTGE*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to drought stress
Other Information
References Ma et al., 2021b;Zhang et al., 2019