Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d015851_circ_g.3 |
ID in PlantcircBase | zma_circ_008648 |
Alias | zma_circ_0001863, GRMZM2G145376_C3 |
Organism | Zea mays |
Position | chr5: 126275691-126278580 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ, CIRI2 |
Parent gene | Zm00001d015851 |
Parent gene annotation |
Tubulin binding cofactor C domain-containing protein |
Parent gene strand | + |
Alternative splicing | Zm00001d015851_circ_g.1 Zm00001d015851_circ_g.2 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d015851_T010:4 Zm00001d015851_T011:2 Zm00001d015851_T001:4 Zm00001d015851_T006:4 Zm00001d015851_T009:4 Zm00001d015851_T005:4 Zm00001d015851_T002:4 Zm00001d015851_T007:4 Zm00001d015851_T004:2 Zm00001d015851_T003:4 Zm00001d015851_T012:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.060125811 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
126277778-126278577(+) 126275707-126277923(-) |
Potential amino acid sequence |
MMQVGVDPSVNKWDQPFVLGVVDPHDSLSHPAGVADVKAESATCLDPDLFTSFLIPSWFGDEGQ EPINCNPFPLPEIYEAFQSKKVLNCHDSVIYILAPLKYATVYGCSDATVVLGAVGKVVKVEHCE RVHIIAAAKRICIANCRECIFYLGVNHQPLVLGDNHKLQVAPFNTCYPQLQDHMMQVGVDPSVN KWDQPFVLGVVDPHDSLSHPAGVADVKAESATCLDPDLFTSFLIPSWFGDEGQEPINCNPFPLP EIYEAFQSKKVLNCHDSVIYILAPLKYATVYGCSDATVVLGAVGKVVKVEHCERVHIIAAAKRI CIANCRECIFYLGVNHQPLVLGDNHKLQVAPFNTCYPQLQDHMMQVGVDPSVNKWDQPFVLGVV DPHDSLSHPAGVADVKAESATCLDPDLFTSFLIPSWFGDEGQEPINCNPFPLPEIYEAFQSKKV LNCHDSVIYILAPLKYATVYGCSDATVVLGAVGKVVKVEHCERVHIIAAAKRICIANCRECIFY LGVNHQPLVLGDNHKLQVAPFNTCYPQLQDHMMQVGVDPSVNKWDQPFVLGVVDPHDSLSHPAG VADVKAESATCLDPDLFTSFLIPSWFGDEGQEPINCNPFPLPEIYEAFQSKK(+) MTVQNLFALECLINFRQWERIAVYRLLPFIPKPTRNQKTGE*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
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References | Ma et al., 2021b;Zhang et al., 2019 |