Detail information of BGIOSGA028087_circ_g.2


General Information
CircRNA Name BGIOSGA028087_circ_g.2
ID in PlantcircBase osi_circ_007568
Alias 8:4926431|4929778
Organism Oryza sativa ssp. indica
Position chr8: 4926431-4929778  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA028087
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA028087_circ_g.1 BGIOSGA028087_circ_g.3 BGIOSGA028087_circ_g.4 BGIOSGA028087_circ_g.5
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA028087-TA:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGAGATGGATGATGCTACTCGTGGGGCAGACAACATCAGAAGTGATATTGGTGCCCTTGCTCAG
AGATACACTGTAATTGATCGTGAGGAGGAATGTGGGattaatcgcctcctgttggaagatggca
caggagccacgtcaaatgctgtagcagattctaaagactcggaatatcgttcaatagtaaatga
attccgtg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATTAATCGCCTCCTGTTGGAAGATGGCACAGGAGCCACGTCAAATGCTGTAGCAGATTCTAAAG
ACTCGGAATATCGTTCAATAGTAAATGAATTCCGTGCTTTTCTAAGTGATAGCAAAGATGTATT
AGATGAGGCAACAACAATGAGACTGTTGGAAAGGTATGTGGTACCATTGTTGCACAATATGCTT
CACTGGTATTTTAGGTTGTTTAAATTCTCATATATGTATTGTACAGGTAACTTACATATCTTTG
GATAGAACCTGCATAATTTTAATATTCCATACATTAATACTATATTTAAAATTGTTGAACATTT
GCCAAACAAAGGACCTGATTTAATGTCCATTTGCTTTAAACTCAGGGCTTTGTGTACAACCAGT
AGGATTTGTTCTATTAAGAAGGATATCATCTTTGAGCCTTCAATAGCTCATTTATTTAAAAGGG
GAAATGCAGCAAGACTGCAAGCTGCATCAATGGATAGACTATAAAATATTTCATTATTTAGTTT
ATGCAATTCTGTTGACTTGTCATGAATAAGATGGCTGTATGTTCTCTCCATTTGTTGTGTTGCT
GATTATATGTGTTCCCCAACTGGTACCTTGAAACCTTTTGCAGTTATGGGAGAGTGGATGAGCT
GGTTTATTTTGCTGGTTTAAAGGAGCAACATGAAATTGTGGTTCATCATTACATTCAGGTCAGT
GTCAGGCATTTATCATCTAAAGGTGTTAAATACTAATTTGTGTCGAGCATAACAATAGTAAATA
CTATAATCTGCCAAGTGCTAGCTAGTATTAACATTATGTTTGCTAATATGTTTGAGCAAGCAAA
GATATGCATACCTTGATTATCGGCCTATAATGGGTGATAAGAGCTTGTTTATGCCACAAACTAA
TTGATTATTTTATAGAACAGTTCATGTAACATGTGCTGGGATGGGGCTTGTGCCAGCCAGATAT
TTCAGGCTAGGCTATGCTTTGAGCAGGCTCAATGCCAGCATGATCTTGCATTCTTACCATAGTC
TAACATCAAATTTCCCTTCTATCTGTTCTCTTGAGCAACTGTAGTTTCTATATCATTCTTCTTT
GTAGAATAGTTGGAAAGGAAACATTTATAATATTACTGGAGTTCGTTGCACATCTTTCTTTGAA
GCCAATGCTTCAAAATCATTGCATTCAGTTATCTTGAAAATACAAGTTTTTTACTTATTATATG
AGGTACCTTTTGCACTTGGAACCCATTGGCATTAGCTGAGATGTCAAGTCCTTATGCATTTTCT
ATTTACTTTGTCAGCAAGGAGAAGCAAGAAAGGCATTGGAAGTTCTTCAGCGACATAATGTTCT
AGTAGACCTTGTGGTACATAATGGCTTTACATTTATTCTTTGAATGCTGCAGTATAGAACTCAA
AATAAGTTTATTATTGATTCTACCACAACAAGGTTACATTTTCTGTTTTACACAAAATTACACA
TTTAATATTTTTTAATTCTAGCCGTTGCTCTTTAACTTGTTTTTGTGCAGTATAAATTTGCTCC
AGATTTAATCATGTTAGATGCTTATGAAACTGTTGAATCATGGATGATGGCAAGAAATAAGTTG
AATCCAGGGAAGCTTATACCGGCAATGATGCGTTATGTGAGCGAACCACATGCCAAGTATGATA
TGCTAATGGCTTCTTATACGTTCCTATTCCCCTATTGCTATAATACTATATGAATCCTTTAATA
TTATGTGATATCTTAACAGTTGACAGCCTTACCGTCTTTTATCACACCAGGGAACTCTGAATGC
TATATATAAAAACATTGTTACTATTGAAACGAATTTTGCTACTGGTGGAAGTGAATTTAGATCT
GTTACACTTAAATCCCATATCAGATAGTGATAATTCGAATCAAACCTAAGAATGCCTAAACTCC
CTATGTTCAGAAGCTCTGGAACAAACTGCAATTCTATGTAGCCAACTTGATTTCCATAATCAGG
ATGATGTGATGAATTCAACTCTTGCAGGAATGAAACACATGAAGTTATCAAGTACTTGGAATTC
TGTGTAAAAGATTTGAACAATGAGGATCCTGGAGTGCATAATTTGTTGCTCTCACTGTATGCCA
AGAAGGTAGCTCTTCCAGTAGTGCATTATTTGTTGCTCTTGCTGTGTGTGAAATTACACTTTAT
ATTCTTACAAAGTAGGAAAAATATCATGTAATTAATTTTGTTGTGTATGTTTCTTTTTTATGTG
TTGGAAACATTAAACTGTAATAGCAGTAATTGCTTACTTTGCACTCAATTCATCATTCATGTTT
CTGGTGGTTCTTATGAGGTTGTCAATGCCATACCAGTCAAGCGTATATTTGTCAACACATATAA
CTAATGATTTTGTATGTGTACTCTGGTTTATTCATGTGCAGGACGATGAGTCTCAGCTTTTGCA
ATTCTTGGACACTAAGTTTGGTAAAGGACAGACAAATGGCCCTGAGTTCTTTTACGACCCCAAA
TATGCTCTGCGTCTATGTCTTCAAGAGAAGAGAATGCGTGCTTGTGTTCGTATTTACAGCATGA
TGTCCATGCATGAAGAAGCTGTTGCACTTGCATTAACGGTAAACCTCATTCCTCACTAAGTCTC
ATCATTTCTTTAAGAGTCTACTAATTCCATTCAATAAGCATCCCTTGTGCTTTTGCATATTGAT
GGTGTAGGATTTTGAAGTGTTCTTATTTTTATGAGGCTTTCTTATTCCTTTACTCAATTTGGTC
CTTGCTAGGTGGACTTAGAGCTTGCAAAAGCAGAAGCAGATAAAGTTGAAGATGATGAAGAACT
TAGAAAGAAGCTGTGGCTTAAGGTTGCAAAGCATGTCATTGAGCAAGAGAAAGGAGTCAAGAGG
GAGAACATAAAGAAAGCTATAGAATTCCTATCAGAGACTAACAACTTGTTGAAGATTGAGGATA
TCCTGCCATTTTTCCCAGACTTCGTATTGATCGATGACTTTAAAGTAAGATATAAGTCCAGGCA
GTCAGCTGCTTTACAGAAAAATTCCTCCAATGTCCATTTCTCTGTTGAAGATCCACAACTGCAA
TTTTCTTATTAACAAAAAAGTTATCTGAATGAATAAATTTCGTTGTTAATTATTACTAGTCCAC
ATTTTCTGCATTACCTCTTTTCTCAGCATTAACAGTGAAAAATATTGTCTAAACAGGAGGAAAT
ATGCAAATCTCTCAAGGACTATGACAGCCAAATCGATCAGCTGAAACAGGAGATGGATGATGCT
ACTCGTGGGGCAGACAACATCAGAAGTGATATTGGTGCCCTTGCTCAGAGATACACTGTAATTG
ATCGTGAGGAGGAATGTGGG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 4926576-4929775(+)
Potential amino acid sequence MRLLESYGRVDELVYFAGLKEQHEIVVHHYIQQGEARKALEVLQRHNVLVDLVYKFAPDLIMLD
AYETVESWMMARNKLNPGKLIPAMMRYVSEPHAKNETHEVIKYLEFCVKDLNNEDPGVHNLLLS
LYAKKDDESQLLQFLDTKFGKGQTNGPEFFYDPKYALRLCLQEKRMRACVRIYSMMSMHEEAVA
LALTVDLELAKAEADKVEDDEELRKKLWLKVAKHVIEQEKGVKRENIKKAIEFLSETNNLLKIE
DILPFFPDFVLIDDFKEEICKSLKDYDSQIDQLKQEMDDATRGADNIRSDIGALAQRYTVIDRE
EECGINRLLLEDGTGATSNAVADSKDSEYRSIVNEFRAFLSDSKDVLDEATTMRLLESYGRVDE
LVYFAGLKEQHEIVVHHYIQQGEARKALEVLQRHNVLVDLVYKFAPDLIMLDAYETVESWMMAR
NKLNPGKLIPAMMRYVSEPHAKNETHEVIKYLEFCVKDLNNEDPGVHNLLLSLYAKKDDESQLL
QFLDTKFGKGQTNGPEFFYDPKYALRLCLQEKRMRACVRIYSMMSMHEEAVALALTVDLELAKA
EADKVEDDEELRKKLWLKVAKHVIEQEKGVKRENIKKAIEFLSETNNLLKIEDILPFFPDFVLI
DDFKEEICKSLKDYDSQIDQLKQEMDDATRGADNIRSDIGALAQRYTVIDREEECGINRLLLED
GTGATSNAVADSKDSEYRSIVNEFRAFLSDSKDVLDEATTMRLLESYGRVDELVYFAGLKEQHE
IVVHHYIQQGEARKALEVLQRHNVLVDLVYKFAPDLIMLDAYETVESWMMARNKLNPGKLIPAM
MRYVSEPHAKNETHEVIKYLEFCVKDLNNEDPGVHNLLLSLYAKKDDESQLLQFLDTKFGKGQT
NGPEFFYDPKYALRLCLQEKRMRACVRIYSMMSMHEEAVALALTVDLELAKAEADKVEDDEELR
KKLWLKVAKHVIEQEKGVKRENIKKAIEFLSETNNLLKIEDILPFFPDFVLIDDFKEEICKSLK
DYDSQIDQLKQEMDDATRGADNIRSDIGALAQRYTVIDREEECGINRLLLEDGTGATSNAVADS
KDSEYRSIVNEFRAFLSDSKDVLDEATTMRLLESYGRVDELVYFAGLKEQHEIVVHHYIQQGEA
RKALEVLQRHNVLVDLVYKFAPDLIMLDAYETVESWMMARNKLNPGKLIPAMMRYVSEPHAKNE
THEVIKYLEFCVKDLNNEDPGVHNLLLSLYAKKDDESQLLQFLDTKFGKGQTNGPEFFYDPKYA
LRLCLQEKRMRACVRIYSMMSMHEEAVALALTVDLELAKAEADKVEDDEELRKKLWLKVAKHVI
EQEKGVKRENIKKAIEFLSETNNLLKIEDILPFFPDFVLIDDFKEEICKSLKDYDSQIDQLKQE
MDDATRGADNIRSDIGALAQRYTVIDREEECG(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021