Detail information of BGIOSGA033355_circ_g.1


General Information
CircRNA Name BGIOSGA033355_circ_g.1
ID in PlantcircBase osi_circ_008645
Alias Chr10:22715248_22717542(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 19823513-19825806  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA033355
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   CT-AA
Number of exons covered BGIOSGA033355-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TACCCTTCACTTCAGTGAGGACTATCCTAGCAAACCACCCAAGTGCAAGTTCCCACAGGGCTTT
TTCCACCCAAATGTCTATCCTTCAGGAACAGTGTGCcctcatgatctggcactgcaccatcccc
ggcaagcagggggtaagtaaccaaactgctctagccgaggcgccgacggcgaaccatcccaccc
ctcttcct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTCATGATCTGGCACTGCACCATCCCCGGCAAGCAGGGGGTAAGTAACCAAACTGCTCTAGCC
GAGGCGCCGACGGCGAACCATCCCACCCCTCTTCCTGTTTCGATCTGTTTCGATTCTGCTGCTG
CGGATGCTGGTGTGTGCTCGGATTGTGATGCGACCACGCAATCGGATGCTTCCTCTGTGTGGGG
GAGAATTTAGGTTTTTGCCGCGCTGTTCTGTTGGTAGGTTTGGGGGGGGGGGGGGTAGATTTGT
AGATTGGATTGGTATCTGCACTGGAATCTCTATAACCTGTGGGAGAATTATGAGTAGTTATGTT
GGTTGGAGGGTTTGAATGAAGTTTTTATTGATGGATTGTGTTGATTTGCAGTGGGGATTTGCTA
GGGTCTTACAGATCTTAGTATGATTTTTTTTTAGAATTTTAGTGTTATCATCAATTGATCTAGT
AGTACCTTTTATTTCTGGACAGCTGGGAGGAGTTTTCTCTGTTGTTTGAGTGTTAATTACGTGA
TTTTGTAGCACGAGTTGCCTTCAAACGTTCTAGGTTCAGCGTATCAAATAGTTCTTTTCCATCA
CTAGAGGTTTGCACAGTTGCCTGCGTGCTTTGCTTTACCACCTGTAAACCAGGCATGGAGCACA
CGGACTCATGAATCCCGATGCAATTGCACAGAGTCACGGGCACAGTTATTGAATTAACAGGGTA
CAAGGATCTGAATGTTGTAAGATTTAGTTGCTGAAAGATGGATTATAGTCACCATCACTACTGT
CTTCATAATCAACATCACTTCCAAAACACTTTATCTTGCATATGGGGGGATATATAGTAATCTT
CAGTGGCGGACCCAGGATTTCTTCATGCCCTAGGCCAAATCTAATTGCTACTATCCCATACCAT
AAATGAGACCCACACTAATACATAATAAGTACAATACAAATTATTATAGTTTCGAAAGGAAAAA
AACAACAACGCAAGAAACAGCATCTAACCTCAAAATGACAGCTATTTGCTCTTTGAAAGATGCA
TCTCCATCATACTCATCAACAAAAATGGCGGATTTTTTTTCCACGGAAAGCATTTAGAATGGTT
TTACCCGTCTCAATTGCACAAGATTTACACTCTAGATTTTATATTTTTAGTGAAGTGAATAGAT
GATTCCCGGGAGAATTTTGAAATGTTTCTGGTCATCTTTATTCTTCTCTTTATACCCCATCAAT
CATCTATAGATTTCATCGCTAAGCCTCTTCACCTTCTATCTCTATTAAGTTTAAAACAAATTGA
ATGGAATCAGAAGATCTATAGGTGATCTAGGCCATTTAGGCATTTGAGAAATGGGAATACCAGA
AATAGATTATGAAAAACTCACCTGTCAAGGTCCTCGTCCGCTCCTTGCCCGACAGAGTGGAGGT
CTGAGACTCTGAGCACCTGCCGCTTGCCGCAGGCGCACCGTGCAGGGGGGTTGTGCAGAAAGAG
CCTTGTTGCCGGGCCGCCGAGCCAGCGAGAGGAGCTGAGGAGGCAGTGGACATGGACGGAGGGA
GGGAGGTGAGGCGGCTGGGCAGGGTGGTGGGTGGCTGGAAGCGGGGAGACTCACGTATGGTGGC
GGCTGGCCTTGGAGGGAGCGAGCAGGGAGGGAGGCGAGGGGACGGACGCATCGGCGTCGGCTCA
TCTCCCACGAGCGCATAGTGTTGTAGTGGTAGCAGGGGGAAGTTAGGGTTAGACAATAAATAGT
ATTGGGCAATAGATGCTAGCCTGACGGGCCTCGGGCCAAACCTTTGTGAGCCAAAATTTCTAAG
CTGTAACCAATGGGGGGATCCATTGCTAGTTGGGCCAGGCCCCAGGTTGTGGCCTAAGGTGCCC
AGGCCTGGGTGCGCCCCTGGTGATCTTGTGTATTAGTTCAGCATGCTGCTGCTCAACTTCTATT
GTTATGTAACAATCACTCTCTTGACAAACCAGCCTAGTAGGCTAACAAATACTAATTTTCCTTC
AATAAATGTATTATTGTCATATACTTATTGCTTCTTTATGTTGATATATGTATATTACAGTGTA
TTTTTCACTCTGCCCATGGAACGCCAATTAGGGGTTGCTTTTAAGCTTTTCCTGTTTCTTTCCA
TCCAGAGTTCATAATTGCTTATGTTATTTGTGTGTATTGCTACATTTGTACAGACCGATTGGGA
AGGTGGGTACTACCCTCTTACCCTTCACTTCAGTGAGGACTATCCTAGCAAACCACCCAAGTGC
AAGTTCCCACAGGGCTTTTTCCACCCAAATGTCTATCCTTCAGGAACAGTGTGC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021