Detail information of EPlOSAG00000030807_circ_ig.1


General Information
CircRNA Name EPlOSAG00000030807_circ_ig.1
ID in PlantcircBase osa_circ_032108
Alias Os06circ16986
Organism Oryza sativa
Position chr6: 28694968-28695713  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method SMALT, Segemehl
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing EPlOSAG00000030807_circ_ig.2 EPlOSAG00000030807_circ_ig.3 EPlOSAG00000030807_circ_ig.4 EPlOSAG00000030807_circ_ig.5 EPlOSAG00000030807_circ_ig.6
Support reads 2
Tissues leaf and panicle
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGGTGATGCGGGCGCACCGGATCATGGAGCGCGTGCAGGAGGAGCAGCGGAGGTGGTATGGCGT
CAAGGAGCCGCGCCATGTCCTGGTCGTGACGCCCACctacctcccccaacctccccatcaaaaa
ctagtagtagcagtatccacccatccacgcacgcgaccgagcgcgatcgattcgaggcggcggc
ggcggagg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTACCTCCCCCAACCTCCCCATCAAAAACTAGTAGTAGCAGTATCCACCCATCCACGCACGCGA
CCGAGCGCGATCGATTCGAGGCGGCGGCGGCGGAGGAGGAGGAGGGGGAGTAGATCCGGCGGGC
GGCAGCGATGATGAAGTCGCTGCTGCCGCAGAGCCAGCTGCGGCGGTCGGCGGCGGCGGCTTCG
GCGGCGCGGTCTTCGGGAGGAGGCGCGGGGTCGGGCGGCGCCGATGGGGCCGGCTCCGACGGCG
GCGCGGGCGGGCGTGCCCCCGCCACGTCCACGTTCTGGTTCCTCCTCCACGCGCTCTGCTGCCT
CGTCTCGCTCTTCCTCGGGTTCCGCTTCTCCAGGCTCCTCTTCTTCCTGCTCTTCTCCACCACC
GCGCTCTACTCCTCCACCTCGTCGTCCTCCTCCTCCGCCGTGCTCCGCGCCACGACGACGACGA
CGACCACCACCACAACCACCACGACCACCACCAACACCTTCACCCTCTCCTTCCAAGCCAACCC
AAACCCTCCCCCATCTAACCTCTCCAACCACACTGCCCTGGACGCGGCGGGGGCGGCCGGGCAC
ACGCAGAGCCACGTGGTGGTGGGGCGGCATGGGATACGGATCCGGCCATGGCCGCACCCTGACC
CCGTCGAGGTGATGCGGGCGCACCGGATCATGGAGCGCGTGCAGGAGGAGCAGCGGAGGTGGTA
TGGCGTCAAGGAGCCGCGCCATGTCCTGGTCGTGACGCCCAC
Conservation Information
Conserved circRNAs NA
PMCS 0.279710378
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015