Plant Circular RNA Database

Detail information of Os06g0670000_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os06g0670000_circ_g.2
					
						ID in PlantcircBase
						osa_circ_031934
					
						Alias
						Os06circ16335/Os_ciR295
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr6: 27750224-27750800  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, CIRI, PcircRNA_finder, SMALT, Segemehl, circRNA_finder, find_circ
					
						Parent gene
						
							Os06g0670000						
					
						Parent gene annotation
						
							Similar to Molybdenum cofactor sulfurase. (Os06t0670000-01)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							NA						
					
						Support reads
						10/152/37
					
						Tissues
						leaf and panicle/root/shoot, root, seed, pistil
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os06t0670000-01:2

General Information
CircRNA Name	Os06g0670000_circ_g.2
ID in PlantcircBase	osa_circ_031934
Alias	Os06circ16335/Os_ciR295
Organism	Oryza sativa
Position	chr6: 27750224-27750800 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer, CIRI, PcircRNA_finder, SMALT, Segemehl, circRNA_finder, find_circ
Parent gene	Os06g0670000
Parent gene annotation	Similar to Molybdenum cofactor sulfurase. (Os06t0670000-01)
Parent gene strand	+
Alternative splicing	NA
Support reads	10/152/37
Tissues	leaf and panicle/root/shoot, root, seed, pistil
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os06t0670000-01:2

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CAGCAGCTCTGAAACTTGTTGGTGAATGTTTTCCATGGAGTAGAGAAAGCTGTTACATGTACAC
GATGGAGAATCACAATAGTGTGCTTGGGATAAGAGAatagtcagagtgattcaagcatggctgc
gagtgacctcgttactgctgcacgccatcaggtattgtgtgctagttttccagaacagttactt
cgggagaa

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 171
Transcript exons: 27750224-27750284,27750691-27750800
ATAGTCAGAGTGATTCAAGCATGGCTGCGAGTGACCTCGTTACTGCTGCACGCCATCAGGTTCT
GGGGCAACAGCAGCTCTGAAACTTGTTGGTGAATGTTTTCCATGGAGTAGAGAAAGCTGTTACA
TGTACACGATGGAGAATCACAATAGTGTGCTTGGGATAAGAGA
Transcript length: 173
Transcript exons: 27750224-27750243,27750648-27750800
ATAGTCAGAGTGATTCAAGCATACTTCAATGCATCTCCCAGAGAATACAAGTGCATATTTACCT
CTGGGGCAACAGCAGCTCTGAAACTTGTTGGTGAATGTTTTCCATGGAGTAGAGAAAGCTGTTA
CATGTACACGATGGAGAATCACAATAGTGTGCTTGGGATAAGAGA
Transcript length: 186
Transcript exons: 27750224-27750259,27750651-27750800
ATAGTCAGAGTGATTCAAGCATGGCTGCGAGTGACCCTTCAATGCATCTCCCAGAGAATACAAG
TGCATATTTACCTCTGGGGCAACAGCAGCTCTGAAACTTGTTGGTGAATGTTTTCCATGGAGTA
GAGAAAGCTGTTACATGTACACGATGGAGAATCACAATAGTGTGCTTGGGATAAGAGA
Transcript length: 199
Transcript exons: 27750224-27750262,27750641-27750800
ATAGTCAGAGTGATTCAAGCATGGCTGCGAGTGACCTCGTTTTAAAATACTTCAATGCATCTCC
CAGAGAATACAAGTGCATATTTACCTCTGGGGCAACAGCAGCTCTGAAACTTGTTGGTGAATGT
TTTCCATGGAGTAGAGAAAGCTGTTACATGTACACGATGGAGAATCACAATAGTGTGCTTGGGA
TAAGAGA
Transcript length: 206
Transcript exons: 27750224-27750268,27750640-27750800
ATAGTCAGAGTGATTCAAGCATGGCTGCGAGTGACCTCGTTACTGGTTTTAAAATACTTCAATG
CATCTCCCAGAGAATACAAGTGCATATTTACCTCTGGGGCAACAGCAGCTCTGAAACTTGTTGG
TGAATGTTTTCCATGGAGTAGAGAAAGCTGTTACATGTACACGATGGAGAATCACAATAGTGTG
CTTGGGATAAGAGA
Transcript length: 220
Transcript exons: 27750224-27750282,27750640-27750800
ATAGTCAGAGTGATTCAAGCATGGCTGCGAGTGACCTCGTTACTGCTGCACGCCATCAGGTTTT
AAAATACTTCAATGCATCTCCCAGAGAATACAAGTGCATATTTACCTCTGGGGCAACAGCAGCT
CTGAAACTTGTTGGTGAATGTTTTCCATGGAGTAGAGAAAGCTGTTACATGTACACGATGGAGA
ATCACAATAGTGTGCTTGGGATAAGAGA
Transcript length: 244
Transcript exons: 27750224-27750318,27750652-27750800
ATAGTCAGAGTGATTCAAGCATGGCTGCGAGTGACCTCGTTACTGCTGCACGCCATCAGGTATT
GTGTGCTAGTTTTCCAGAACAGTTACTTCGGTTCAATGCATCTCCCAGAGAATACAAGTGCATA
TTTACCTCTGGGGCAACAGCAGCTCTGAAACTTGTTGGTGAATGTTTTCCATGGAGTAGAGAAA
GCTGTTACATGTACACGATGGAGAATCACAATAGTGTGCTTGGGATAAGAGA
Transcript length: 260
Transcript exons: 27750224-27750361,27750679-27750800
ATAGTCAGAGTGATTCAAGCATGGCTGCGAGTGACCTCGTTACTGCTGCACGCCATCAGGTATT
GTGTGCTAGTTTTCCAGAACAGTTACTTCGGGAGAATAGTGAATTTAGGCTGCCTCATGGCAAT
AGTATTTAAGTGCATATTTACCTCTGGGGCAACAGCAGCTCTGAAACTTGTTGGTGAATGTTTT
CCATGGAGTAGAGAAAGCTGTTACATGTACACGATGGAGAATCACAATAGTGTGCTTGGGATAA
GAGA
						
					

						Genomic sequence
						
							ATAGTCAGAGTGATTCAAGCATGGCTGCGAGTGACCTCGTTACTGCTGCACGCCATCAGGTATT
GTGTGCTAGTTTTCCAGAACAGTTACTTCGGGAGAATAGTGAATTTAGGCTGCCTCATGGCAAT
AGTATTTAAGCTCTATCAGTCTATGCCAATGCTCAGCATTGGCACATTGCATGATGAGTCATCC
TGCATCCATTTTTTTTCCATTTTACGCCCTAGTTATTGCTACTTTCTTATCTACTACTACGTAC
AATGATTTGTGCCCCAGGAAGTTGCATGAATTGTTTTGATTCCAAGGTACTACAACAGGGTGCC
TGCACAGCTACATCTTTACTATATCCAGTTATGCGCATGGTACAAGTTTTGCCATCTGCTAATT
TCTTTGTAGTGATGTTGACCTGTTTTTCACAGGTTTTAAAATACTTCAATGCATCTCCCAGAGA
ATACAAGTGCATATTTACCTCTGGGGCAACAGCAGCTCTGAAACTTGTTGGTGAATGTTTTCCA
TGGAGTAGAGAAAGCTGTTACATGTACACGATGGAGAATCACAATAGTGTGCTTGGGATAAGAG
A
						
					

			
		

Sequences
Splice junction sequence	CAGCAGCTCTGAAACTTGTTGGTGAATGTTTTCCATGGAGTAGAGAAAGCTGTTACATGTACAC GATGGAGAATCACAATAGTGTGCTTGGGATAAGAGAatagtcagagtgattcaagcatggctgc gagtgacctcgttactgctgcacgccatcaggtattgtgtgctagttttccagaacagttactt cgggagaa
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 171 Transcript exons: 27750224-27750284,27750691-27750800 ATAGTCAGAGTGATTCAAGCATGGCTGCGAGTGACCTCGTTACTGCTGCACGCCATCAGGTTCT GGGGCAACAGCAGCTCTGAAACTTGTTGGTGAATGTTTTCCATGGAGTAGAGAAAGCTGTTACA TGTACACGATGGAGAATCACAATAGTGTGCTTGGGATAAGAGA Transcript length: 173 Transcript exons: 27750224-27750243,27750648-27750800 ATAGTCAGAGTGATTCAAGCATACTTCAATGCATCTCCCAGAGAATACAAGTGCATATTTACCT CTGGGGCAACAGCAGCTCTGAAACTTGTTGGTGAATGTTTTCCATGGAGTAGAGAAAGCTGTTA CATGTACACGATGGAGAATCACAATAGTGTGCTTGGGATAAGAGA Transcript length: 186 Transcript exons: 27750224-27750259,27750651-27750800 ATAGTCAGAGTGATTCAAGCATGGCTGCGAGTGACCCTTCAATGCATCTCCCAGAGAATACAAG TGCATATTTACCTCTGGGGCAACAGCAGCTCTGAAACTTGTTGGTGAATGTTTTCCATGGAGTA GAGAAAGCTGTTACATGTACACGATGGAGAATCACAATAGTGTGCTTGGGATAAGAGA Transcript length: 199 Transcript exons: 27750224-27750262,27750641-27750800 ATAGTCAGAGTGATTCAAGCATGGCTGCGAGTGACCTCGTTTTAAAATACTTCAATGCATCTCC CAGAGAATACAAGTGCATATTTACCTCTGGGGCAACAGCAGCTCTGAAACTTGTTGGTGAATGT TTTCCATGGAGTAGAGAAAGCTGTTACATGTACACGATGGAGAATCACAATAGTGTGCTTGGGA TAAGAGA Transcript length: 206 Transcript exons: 27750224-27750268,27750640-27750800 ATAGTCAGAGTGATTCAAGCATGGCTGCGAGTGACCTCGTTACTGGTTTTAAAATACTTCAATG CATCTCCCAGAGAATACAAGTGCATATTTACCTCTGGGGCAACAGCAGCTCTGAAACTTGTTGG TGAATGTTTTCCATGGAGTAGAGAAAGCTGTTACATGTACACGATGGAGAATCACAATAGTGTG CTTGGGATAAGAGA Transcript length: 220 Transcript exons: 27750224-27750282,27750640-27750800 ATAGTCAGAGTGATTCAAGCATGGCTGCGAGTGACCTCGTTACTGCTGCACGCCATCAGGTTTT AAAATACTTCAATGCATCTCCCAGAGAATACAAGTGCATATTTACCTCTGGGGCAACAGCAGCT CTGAAACTTGTTGGTGAATGTTTTCCATGGAGTAGAGAAAGCTGTTACATGTACACGATGGAGA ATCACAATAGTGTGCTTGGGATAAGAGA Transcript length: 244 Transcript exons: 27750224-27750318,27750652-27750800 ATAGTCAGAGTGATTCAAGCATGGCTGCGAGTGACCTCGTTACTGCTGCACGCCATCAGGTATT GTGTGCTAGTTTTCCAGAACAGTTACTTCGGTTCAATGCATCTCCCAGAGAATACAAGTGCATA TTTACCTCTGGGGCAACAGCAGCTCTGAAACTTGTTGGTGAATGTTTTCCATGGAGTAGAGAAA GCTGTTACATGTACACGATGGAGAATCACAATAGTGTGCTTGGGATAAGAGA Transcript length: 260 Transcript exons: 27750224-27750361,27750679-27750800 ATAGTCAGAGTGATTCAAGCATGGCTGCGAGTGACCTCGTTACTGCTGCACGCCATCAGGTATT GTGTGCTAGTTTTCCAGAACAGTTACTTCGGGAGAATAGTGAATTTAGGCTGCCTCATGGCAAT AGTATTTAAGTGCATATTTACCTCTGGGGCAACAGCAGCTCTGAAACTTGTTGGTGAATGTTTT CCATGGAGTAGAGAAAGCTGTTACATGTACACGATGGAGAATCACAATAGTGTGCTTGGGATAA GAGA
Genomic sequence	ATAGTCAGAGTGATTCAAGCATGGCTGCGAGTGACCTCGTTACTGCTGCACGCCATCAGGTATT GTGTGCTAGTTTTCCAGAACAGTTACTTCGGGAGAATAGTGAATTTAGGCTGCCTCATGGCAAT AGTATTTAAGCTCTATCAGTCTATGCCAATGCTCAGCATTGGCACATTGCATGATGAGTCATCC TGCATCCATTTTTTTTCCATTTTACGCCCTAGTTATTGCTACTTTCTTATCTACTACTACGTAC AATGATTTGTGCCCCAGGAAGTTGCATGAATTGTTTTGATTCCAAGGTACTACAACAGGGTGCC TGCACAGCTACATCTTTACTATATCCAGTTATGCGCATGGTACAAGTTTTGCCATCTGCTAATT TCTTTGTAGTGATGTTGACCTGTTTTTCACAGGTTTTAAAATACTTCAATGCATCTCCCAGAGA ATACAAGTGCATATTTACCTCTGGGGCAACAGCAGCTCTGAAACTTGTTGGTGAATGTTTTCCA TGGAGTAGAGAAAGCTGTTACATGTACACGATGGAGAATCACAATAGTGTGCTTGGGATAAGAG A

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_006901* osi_circ_016536 zma_circ_002994 						
					
						PMCS
						0.471176256

Conservation Information
Conserved circRNAs	osi_circ_006901* osi_circ_016536 zma_circ_002994
PMCS	0.471176256

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							27750245-27750224(+)
						
						Potential amino acid sequence
						
							MAASDLVTAARHQVLKYFNASPREYKCIFTSGATAALKLVGECFPWSRESCYMYTMENHNSVLG
IRE*(+)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	27750245-27750224(+)
Potential amino acid sequence	MAASDLVTAARHQVLKYFNASPREYKCIFTSGATAALKLVGECFPWSRESCYMYTMENHNSVLG IRE*(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Lu et al., 2015;Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os06g0670000_circ_g.2

Address

Any questions?

Supported by