Detail information of Os06g0320100_circ_g.1


General Information
CircRNA Name Os06g0320100_circ_g.1
ID in PlantcircBase osa_circ_042318
Alias NA
Organism Oryza sativa
Position chr6: 12434161-12434368  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRI-long
Parent gene Os06g0320100
Parent gene annotation Protein of unknown function DUF773 family protein. (Os06t0320100
-01)
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root
Exon boundary   No-No
Splicing signals   CT-GC
Number of exons covered Os06t0320100-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTGCAGGAGTGGCTGGTGGACCGCAAGCGGGTGCCGCAGGACTGGAGGAAGCGCCTCGCCGGCA
TCCGCGCCCGCCTCGCCGCCGCCTTCGCCTCCCTCCcgctcgccgctcgtttccgccgccgcgc
gatccggcggccggaaggcgtcagccatgcacgaccaggcggagatctgcagcctccccatcga
catcgcct
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 208
Transcript exons: 12434161-12434368
CGCTCGCCGCTCGTTTCCGCCGCCGCGCGATCCGGCGGCCGGAAGGCGTCAGCCATGCACGACC
AGGCGGAGATCTGCAGCCTCCCCATCGACATCGCCTTCGGCCGCCTGCAGGAGTGGCTGGTGGA
CCGCAAGCGGGTGCCGCAGGACTGGAGGAAGCGCCTCGCCGGCATCCGCGCCCGCCTCGCCGCC
GCCTTCGCCTCCCTCC

Genomic sequence CGCTCGCCGCTCGTTTCCGCCGCCGCGCGATCCGGCGGCCGGAAGGCGTCAGCCATGCACGACC
AGGCGGAGATCTGCAGCCTCCCCATCGACATCGCCTTCGGCCGCCTGCAGGAGTGGCTGGTGGA
CCGCAAGCGGGTGCCGCAGGACTGGAGGAAGCGCCTCGCCGGCATCCGCGCCCGCCTCGCCGCC
GCCTTCGCCTCCCTCC
Conservation Information
Conserved circRNAs NA
PMCS 0.255204607
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study