Detail information of BGIOSGA031402_circ_igg.1


General Information
CircRNA Name BGIOSGA031402_circ_igg.1
ID in PlantcircBase osi_circ_008705
Alias Chr10:24020243_24022966(MH63RS2), Chr10:24518063_24520786(ZS97RS2), Chr10:24020243_24022966(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 21160585-21163308  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2, CIRI2, CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATGGCGAAGCAGACAAGTACCTTCAGAAAGCAATTGGTACACATCATCACTCAAATCCGTCTT
CCAGAGGCCCAAATCAGAAATACCGCTTGATGCATCcctgcctcatccaacgcgaataacattc
gtgcagctcaaggtgtggccgaccgtgcgcgtacctgtagtagagaaacgtacatggatttatt
ttctggct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGCCTCATCCAACGCGAATAACATTCGTGCAGCTCAAGGTGTGGCCGACCGTGCGCGTACCT
GTAGTAGAGAAACGTACATGGATTTATTTTCTGGCTAGCTTCACAAGTGGTTAGCTAATTGATC
TGGATTTAAAGACTCATCTATTCTATTTATTTGATATTAAATTCTTCTCTACTATTCACGTTTT
TTTCGTACCTGTATGTATACGGAATACTTATATATAAGGGTAGTCTGGTACACGAATTCGTAGA
CGTTGCACACCAGCTTCCACGACAAATAAATAATCCTGCGAGCTGCAGCTGCTCATCATCAGCT
CATCCTATCCTACGGACTGCAACAACCAACACAAACACAAGTCAGTCCATGCCGAAAGAAGCCA
AAGAAAAATGCATGGAAAATGTATACACCACATCATCTTGAACCAAATCACCAGATTAATCAAA
GCCAACGAACGTACGACAAGGTGATCATGATAACTATAGCAAGGATGTAAAAACAGGAGTATTA
TATTTTCAAGAACACGAGCAATCAACGGATCTGAACCTGAAGTAATTAACCTGCAAGTCAAAAG
GGATCCACCGCGAGAGGTGGATTATTGTCGGTCTACCACTCGTAAAACCGGGGGACAATGTTGT
CGGTCTACTACTGCATTCTGTATTATCATATTGCTACAAGCACGAAACAGTGACAGCTTATCTA
AGCCAACAATATGCTTTCTGCTCGCAACTAATTAAAATTGCATCCATGGGGTTGAACGGACCAA
AGAGGATAAGTTAAGAAAAAGCGTGGCTAAACACTCAAAAAGTCGGCAATCGATCAGCATGCAC
CTTTATCCCTTATGCACGGTAATCCTAAGCCATGACTATCACGGAACGCGTCAAAGAAAAATGA
CAGTCACGGATCAATCAAGGGCGCAGTTAATAAAAATAGCAAAAACTTGAAGGTGTTAGGATAA
TTTTGACAGTGACTTGCTTGTTACAGAGATATTACCTTCTTTTTATATTCTGTACTAAAGAGTA
TTTACCTATTTGAAGTAGAAAGGCATCATAATCTAAAGTAAAACAGAGTATGTAAGCAACTGAG
TGAGCAATGGCCTATATTATTTTCGTGTGGAGATATTCTCATCTAATGTCATCAAGATTCAAGA
CGGAGGTTGCACTTGCACCGATCTAGAGAGAGGATGTGCTTACCAACATCCAAATCTTGATGCC
TAATTTTGTTGATGCAGTTGGACAAAATATCCCTTGCAAGATACTAGCATATATCTTCAAATTA
TCGAATAAAATATAAGTTAGGATCCATCAGCAGTGACTGGACCATATCTTTTTTTATATATAAA
AAAACTGACACTGGAGTACAGGACCATATCAACAGGTGGATATATATTGTTTACGTGAGTGATA
ATCTAAAGAAAGAACAGAACTTGATGAATTAAAAGTTGTGAAAAAGATAGCATACCTGCAGGCA
AGGGTAGCCATTCCATATTGGCATATTCCGAATGTGCCGTTGCAACAGTTTCCATCATCAGATT
CATATGCTTCACTGGTATTGAATTGATAAACAAATCCATTTCAATAAAACAAAGAGATAAGATG
TATGGAAATAAAATATAAACTTAAAAAAGTTGCTCGGCTGGATCAACAATGATAAAGAAACACA
GTCAGTTCATTAAAAAGAATAAGAAGATTCATGATTTGTTTTCTGTTTATATCTCATTCTCTAG
TTTAAAAACAACTCAGTTGAACATTGCACAAAACAACGGTACTCCAGAGCCCAGAAGCCTACAC
GCCTTATATTTATGTTACCTAATAGATTTAATTTTCTCAATCATACGCACCCAGTATATGGCAG
CAATATAATTAATCTGAAACATTAGTAAGAAGATTTTGCTGAGATGCTAGTTTGAACACTGAAC
CAACCATATTTATGTTACCTAATAGATTTAATTTTCTCAATCATACGCACCCAGTATATGGCAG
CAATATAATTAATCTGAAACATTAGTAAGAAGATTTTGCCGAGCTGCTAGTCTGAACACTGAAC
CAACCATTTTGGACCTTATGGTTTCTTACTAAACTAAAAATGTTCTGGCATGAAGAGTTTTAGT
ATCATATAAACACTGTAATGCACAGATATTTAATACCAACTAACAAATACACTTGAAATGGTGC
ACTTATGACTGCACTGCATTATTGACCGAATAGTGCTGATCAGCAGTAACGTGCACCATTGTTC
TGAAAGAATTCAGAATCAGGTCCCAAACTTGAAGGGAAATATAAGCAACAACAGTGGAGTAAAC
AGTTCTCTGAAACAAGATATGAATGTGCAATGAGCAAGAGTGATAGAAAGTGGGTTGTGAACTT
GTGATACAGTTCTAGAATGCTGTAGTTGTTTGCACAATACCAAATCAAAAATGCCTATGGCAGA
TTTGCACAGTACAGTTTCATTGACGCCTTTCAAGATGGAAAGTGTTCTAAAGATAATTTGGCCG
GACAAATATAGAAATATTCTTTTGTCCTTTTAAGAAGCAAAGCTTGGAAAGGACATCAAATCAA
CTGAATGATGAACGTCCAAGTAAAAATGAACGGTTACATTTGACAAATTTATCAGTTGTTGAGA
AATGGCGAAGCAGACAAGTACCTTCAGAAAGCAATTGGTACACATCATCACTCAAATCCGTCTT
CCAGAGGCCCAAATCAGAAATACCGCTTGATGCATC
Conservation Information
Conserved circRNAs osa_circ_008010
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021