Detail information of POPTR_0004s08360_circ_g.1


General Information
CircRNA Name POPTR_0004s08360_circ_g.1
ID in PlantcircBase pop_circ_001263
Alias Chr04:7062172-7066913
Organism Populus trichocarpa
Position chr4: 6892049-6896790  JBrowse»
Reference genome Populus trichocarpa genome v3.0
Type   e-circRNA
Identification method CIRI2; circRNA_finder
Parent gene POPTR_0004s08360
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads 2
Tissues leaf; cambium; xylem
Exon boundary   No-Yes
Splicing signals   CT-AA
Number of exons covered POPTR_0004s08360.1:9
POPTR_0004s08360.2:10
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGATATGAAAAATACTTTTACCTCGTAGCACTTGTCAGCTTCATCCAGTTTCCGCTGCATGAGA
TAAAACTGCCCAAGGTTGTGAAGCGCAGCACCCACAccttgtagaactgtgcaaaagatctttt
gccttgtcaagctcagcaattgcttcagaaatatttatctttctcagccgatttgaattcaaca
ttgcaacc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTGTAGAACTGTGCAAAAGATCTTTTGCCTTGTCAAGCTCAGCAATTGCTTCAGAAATATTT
ATCTTTCTCAGCCGATTTGAATTCAACATTGCAACCCTTGCAATATGAAGCAGATTTGCAGCAA
TCTGTCCACAAAGAACAGAAGCAAGTCTTGTATGAAACACATGCAAGCTAAATTTCATTATCAT
AAAGTAGTGAAAAATAAAAGCACATCCTCTGGTTAAGATTACTCATCCAAATGATGTCAACTCC
TTTTTTTCCCTTATAATTTATGAGTTGAATGTGTCAGAATGATAAACCTGAATGTGATCTTCGG
GAAGCAAGGACTTCCGAGCCTCAAGACACCTGCAATCAAAAGTTATAAGATATAATTTAATTTG
TGTTGCCAACAATCACATCTTTTGTTCTACAGTTATCCTAATCATTTTTCTCACCTTTCAAGTA
GTTCTTTTGCTTCTTTTATCTTCTCAATTGACTGTAGGATTAGGGCCAGCCTTTCAGCTACTAT
TACTGTGTCCATGGAATTCCATCCCTGAATTAGAAGGTAGCTATCACATCAGGAGCTGATGATG
ACATCACAGAATTTAAAGGAAGAAAGATACACCTCATTTTAATAGTTAGTTAGATTCGTGACCA
ACAGGGTTTTTCCTTGCAAAATCTTGAAGCTCTCAAGGATGGGATGTCATTGCAAAAGTTTAAT
CTTCTATAACAAAACCCTTACAAGAAAAGGTGCTAATGGGATGTGCACACAAGTATATGACTTT
CTTTCAAATGTAATGCATGGACAAGCTCCTACCATACTAATCTTTCTGAACTAGGTCCAATATT
TCTCTTCCTGGTTTCCTTTACCCAACTTTTCATGGAAGGCCAAGTACCCTACGGTCATAGCATT
TTTATTTAGTCTGCAGTCCTCAACAAGATAACACTGCTACTTATTGCAGATAAGAAGGCCTAAA
ATGGCAGTCTCCAGATGCTTGTGGATGTGTGCTAACAGCATAAAAGACCTGGGTCATCTATTCC
TGAATTGTTCAGTCACCAGGAGCTCTGGCTGGCCTATGTTTTTCTCAACTTTGGAAAATCGTGC
GTGTCCTTTCTGGAAGACTTGCTTTTGACACAGCATAAAGGTTTTGGTAAATCCAAAGCAAAAA
CATGCAATGTTTGCAGGTCCATTGGTTTGACACTTCTAAAATGTTCAAGGTTAAGAAATTATCT
CACCTTTTGATCCAAGAGAATAATTTTCTTAGCTTCTTGATGGTGCTTTGATACAGGTGTTGCC
TTTGATAAATCCAAAGACAGCAAGAGAATAATTTTTATTGCACTGTTACTCTAGTTTCATTTGG
CTTTCTTTCCTTTAGTACCACGGAAGGATGTCATGTTCTCCAGTCATGTAATCCTTTTCACCCT
TCTTATTCTCTATTTTGGGATAAAAATACAAAAAGACATGTAAGGAGATGAAACCCCAGTACAT
CAGGTACATGAGCTAAAACAAATGCATGGCCTGGGAAGCAAAGCATCCATGAGCTCCATAAAGG
GCCAAAGCAACAAGTTTATACCAAGGAAAAACAAGATACCAGGTGGCAGGGGGAATGGGCAAAG
AAATTTCTATTCCACTAGTTAAAATGGAAGCTTAAAGATAAGCTATAAACCAATGCAATGAAGA
AGAAATTGACAGATATCACAGTAGATGAAGACCGGAATGATATATTTCAGCTGCATTTGCTAGC
TTCAACAAAGCATGTTGCAACTCAACACGTTATCGGAAATTAAGGGAACTAAATCAGTAAGAAG
AAGACGTGGAAAAAAATGGAGCAGAGAAGAGCAGCATCCTGAGAGAATTATTTAGAAGAAAGAA
AGCCAACAATGAACAATGTAACATCAAAAAATTTGAAAAACTATATAGCACCTTTGATAGTTCC
ATAATCTGCAGCACCTTCCTTTGTACATCCTCGGCTTCAGCAAGACGATTGGATTTTAGATACA
TCTGGAAAAGAAAAGAGAATATAAGTAAACTATACAAAAGGTTGAAAAATGCAGTAGTCACACA
AATGGATCGTGTGGTAGAAACAATAAACCTATTTGCATGTGGTAAAAAATACTGCATAAGTTGA
ACTTGAAAGACATGGTACAGCAAAATGAATTAATCTTTTAATCACAAAGGCTAACATGATAGAA
AAATCTACTATATGTATATCAAAAGGAACCACACAACCTGAGAGAGAAATTGCAATCTCCTTAT
GCAAGTAATTGAGTCCCCCATGCCATTTTCCTGTATAATCAAAGAAGACATGGGAGCGAAAGAA
ATAAATTAAATAAAACAATTACTGGAAATTCAGTACCAGGACTAATCGAGCAGCATAGTCACCT
CTAATATCTTAATAGATTCCTGAATGAGGGCTTCAGCATCCTTCTCTTTTCCAAGGAGATAAAG
CACCTGTGACATTAATGATATATGGATCTATAAGCCAACTAAGTACACAGAGGAAAAAAAAAAA
AGAGAACAGCACAGTTTAAAGAACCATAGACACAAAAGAAAGCAATTTTTATTCTAAAAGACAA
GGGGACGCTGCTTGAAATTTAAAATTCCTCTTTCTTCACCTTAGAGTGTTCAAAACAATCTATG
ATAAGCAAGTTTGTGAGTCTTTTAAATCCTCAATTGTATTGTGTGTTGTTAAGGACTTTTAAGT
CCTAGTCGTGCTGCACTGAACCAGGCGTGTCATGCATAGCATACCAGGATGCAGGTATTTGAAT
TATGATCCTTCTTTTTTTTTCTGTGGAAATTGGTTTCAAGGATATAACTTATGAACTAATGTAA
TCTGAAACAAAATTAAAATTGAAAGAAATTAACCTTTAATTAAGTATAATGAATGGAAGGTTAG
AATATCAATAAAAATATGCAACAACAAGTTAATTATTGTTAAGCAGGTCATAAACTGGTATATA
AGTAAATACTGTCTTCCAGTTACTATTTTACATAACCAATCATCCAGGAACGTCATTAATAGTT
TGTTACTCCATTTATTTACTGTCAACTATTTTTATGAGATATTGTCCAACGAAAACATATACAT
TCTCTAAATACATGAAATCATCAACAGTGAAAAGGACAATGAGCATAATGATATTAAAATAAGC
TGACAAATAGATTTAGCACATGCAACCATACAACATAGCTATTACCATTCCGAGATGATACAGT
GTATCTGCATAGTCTGTATGGTTGAGTCCTAAAACACGCCTTTTTATCTGAACAAGATAAGGTT
ACATTGAGAGTTACAAGTTCAAAGTTTGAACTGATAATGGAAGAAAGAAGAAGAAGAACGAATG
AAAGCTTCAAAGCTAATTGAAATTTGAAAATGGATAAAAGAGAATCATGCATGCATGCTATATA
TGCATTTAAGTACTTGTTCGTACCTTCACAGCACGCTGCCAAAGGAAAATCAAAGGGAAGAGCA
CAGATCAGCAGAAATTATCAGTATATGTAGCAGAAAAACATTAGTTGTTGACTGAAAAGAATAA
TCTTGGCTAGATTAATAAAAATAGTTACAATAGAAAGACAAGTAGAAGGAGAGAAAAGGAGGAA
CATAAATATTTAGTGCACACAACATGTACATAGTCCTCCAGAATGCTAGTTCCATTCAAATGCT
ATTTGGCAATAAAGTTTCTATGTTATTATTAAAAGTATAAAGTTATAGTGCAATCGATTATAAG
TCTAATATTTGTTGCTACAGTAGATGTTCATTGAACTACCTATTTCCCTCTCTAAGAGAGGATA
TTCATGTAGTAAATACCAAACCACGGAACATATTTCAACAATCAAGTACCTCCACTGAAGAATT
GATAAGTTTAATGATGTAAATAACAAAACTCTCAATCAATTACATGGTTACAGAGTTTTTCAGA
ATGCACTCGATCCAGGCCACTATTTTCTTTTCGCAGTCACAAAAACAATAGTTCCACTTCCTCT
CCATCCCGAGAAACTGGTTAATTTTTCACTACAATAATTGGTACCTTTCTTAGATGGCCAAACC
AATCAACCCAAGTTTCTCTTATCTTGTGTTTTTAATTAGCATGATCTTTGATTTATATTGTTAG
AGAATAATATAAATCATATCTTGGGACCTCACCTAACAGCTTAAGCTATTGGGTTGAGATGGTT
CTTTAACATGGTATCAGAGCCTTGATGACCAAGTAGTCACAAGTTCAAATCTCACCACCCCCAT
TTATTTGATAAAAATCAAGCACAAGGTAATGTGGGCCTGTGCAAGTTTCAAGTCCAAAGGGCTT
TCACTTGAGGAGGTGTTTTAGAGAATAATATAAATCATATCTTGGGACCTCACCTAACAGCTTA
AGCTATTGGGTTGAGATGGTTCTTTGACATATATAACCAGTCACCAAATTTCATCACCTAAAAA
AGGGAACCAACTACACTCAATGAGCACTTCACTCTTCATTCCACTATGACTAAGGTGTCTTAAG
GATTGAATGTATTCCATGCTGAAGGAAAAATATGTCCAACACGGATTTTCTTGAACTGGGTGGA
ATGAAAAAAAAAATACTGGCAGAAATTCAGAAAATTAACCAGTAAGTGCATATGAACCTTTTGA
TCATAATTCATGAAACTGCAAACAAACTAAGACAGGATATGAAAAATACTTTTACCTCGTAGCA
CTTGTCAGCTTCATCCAGTTTCCGCTGCATGAGATAAAACTGCCCAAGGTTGTGAAGCGCAGCA
CCCACA
Conservation Information
Conserved circRNAs NA
PMCS 0.090497111
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Song et al., 2020