Plant Circular RNA Database

Detail information of AT4G19210_circ_g.1

			
						 General Information
					
						CircRNA Name
						AT4G19210_circ_g.1
					
						ID in PlantcircBase
						ath_circ_031681
					
						Alias
						Ath_circ_FC2704
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr4: 10501205-10504548  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						PcircRNA_finder
					
						Parent gene
						
							AT4G19210						
					
						Parent gene annotation
						
							ABC transporter E family member 2
							
						Parent gene strand
						+
					
						Alternative splicing
						
							NA						
					
						Support reads
						1
					
						Tissues
						aerial
					
						Exon boundary  
						
							No-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							TC-AT							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT4G19210.1:11

General Information
CircRNA Name	AT4G19210_circ_g.1
ID in PlantcircBase	ath_circ_031681
Alias	Ath_circ_FC2704
Organism	Arabidpsis thaliana
Position	chr4: 10501205-10504548 JBrowse»
Reference genome	TAIR10.38
Type	ue-circRNA
Identification method	PcircRNA_finder
Parent gene	AT4G19210
Parent gene annotation	ABC transporter E family member 2
Parent gene strand	+
Alternative splicing	NA
Support reads	1
Tissues	aerial
Exon boundary	No-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	TC-AT The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT4G19210.1:11

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CTATTTGGCAGACCGGGTCATTGTGTATGAAGGACAACCATCCATTGATTGTACTGCAAATTGT
CCTCAATCACTGCTCAGTGGAATGAATCTCTTCTTAtctgagcaaagcagtaactctcaggtgc
gtgtgctctccgctggttccttagaacaatcggcacacgctttttcatttcaatcttcttcttc
tactctta

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							TCTGAGCAAAGCAGTAACTCTCAGGTGCGTGTGCTCTCCGCTGGTTCCTTAGAACAATCGGCAC
ACGCTTTTTCATTTCAATCTTCTTCTTCTACTCTTAAGTATCTCAGGTACTAATCTCGATTTCT
CTATTTCTCGTCCATGGAGATTTAGATTTCAAGTCAGATGCTTTTCGATTTGTTACAGATGTAT
AATTTTTGTAATCGATTGATTCGCAGCTTGGATTGTATTGAGCCATCGACATACCTTCAAAATT
CTTATAATTGTATTGAAAGTGTTTGAATTTAATGTTTTTTTTTTTCTTTCTCTCGATTGTTTTG
ATTTCTGGGCAAGTGTCAACTTTTGTAACAGATTAGTGACCTTTCTCTTTATAGATATGTGGAA
GAATTTGGAATTTACAAATTCGGTTCACCATTTTTATCTGAAGCACTGAATTTGCGTTTTTCAA
GCTTGAGTGAATATTATTTCTTGGCTCTTAAGATTTTGCATGTCAACTATTATTTCATCATTGT
TAGCATCTTGTGGTGTTCAAGTTATTATTTTAAATATTGTTTGTGCTACTCTATAGTTATTCCC
TATGTTGTTATTTCGTTCCTTTGCCTTAGCGTGACATCTTTATTTGGTATATTTGTATCTGTGT
GATTTAGTTTCTTCAGGCTGTTAAACTATAGATTTCATGTATTTTGTAGGTCTGTTGAGAGATG
GCAGATCGATTGACACGTATTGCTATTGTGAGTTCAGACCGTTGCAAGCCAAAGAAATGTCGCC
AAGAGTGCAAGAAGAGTTGTCCTGTGGTCAAGACAGGTGTATATTTTTATTCCAAATTTGGATC
TGTGGTCTTTCATGTGGATTTATTATTATTGTACTGTAATTGATTAGCTTTGTTATGTGCGTCA
TGCCAATTAGTAGACAGAGAATGGTTAGGTGTTTATGTGAAGCCATTAGCTTATAGTTCCTACT
TGAAGTTGTTGTAACTCTACAAATTTTTAGTGCCACTTGTTCATTAACTTGCCTTTTATCTTAG
GAAAACTTTGTATTGAGGTGACTGTTGGTTCCAAGCTTGCTTTTATCTCAGAGGAGTTGTGTAT
CGGTTGCGGTATTTGTGTGAAGGTATGTATGCATAGGCTCTTTCCGATATCCAAGATGCCTCTA
GAAATGGCACCTAAACTGGGATGCTAAATGACTCTGTTGTTACACAATTGCAGAAATGCCCGTT
TGAAGCTATTCAGATTATCAATCTTCCAAGAGACTTGGAGAAAGATACGACCCATCGTTATGGG
GCAAACACTTTTAAGTTACACAGGTTCGTTTATCTACTATTTTTCCTGAAACAAATTGACCGCT
CTTGTAGTTTTCAGACAATGAAATCTTTGTCTTTACTTCCAGGCTCCCAGTTCCAAGACCAGGG
CAGGTGCTAGGGTTGGTTGGAACCAATGGTATTGGAAAATCAACTGCTCTGAAAATTTTGGCTG
GAAAGCTCAAACCAAATTTGGGCCGTTTCACTGTAATAGCCTCTCTTGAGTTTCTAAACTTTTA
TCTTCGAAATTTGGTCTCTTTCATAGTTGATGTGTTCATATATTCCTTGTTGAACAGAGTCCTC
CAGACTGGCAAGAAATCTTGACTCACTTCCGTGGTTCAGAACTTCAAAACTACTTCACACGTAT
TCTAGAAGATAATCTTAAGGTACAGTTGAAACTGATATTAATATTTTTCTCCATGAGGTAGCTA
GGTATTATTTGATGTTTAAGCAGCTCAATTGAGCAAGTTCTGATACCCTGTGCATGGCAGGCCA
TTATAAAGCCTCAATATGTCGACCACATCCCAAGAGCAGTTAAAGGCAATGTTGGAGAGGTCCT
TGACCAGAAGGATGAGAGAGATAAGAAGGCAGAGCTCTGTGCTGATCTGGAGCTGAACCAGGTC
ATTGACCGTGATGTTGAGAATTTATCTGGTGGTGAGCTGCAGAGGTTTGCAATCGCTGTTGTTG
CCATACAAAATGCAGAGATTTACATGTTTGATGAACCATCTAGTTACCTCGATGTTAAGCAAAG
ACTCAAAGCTGCTCAAGTTGTTCGTTCTCTCCTGAGGCCTAATAGGTTTGAATTTCCCAGCTTC
TGAAGTTTTTTTTTCAAAAGGGATAAAAAATAAGGTACTTACATTGTTTTTTTTTTGTTTTTTT
TTTGTTTCCCAGCTACGTCATTGTTGTGGAGCATGATCTCAGTGTTCTTGATTACTTGTCGGAT
TTCATTTGCTGTCTGTATGGGAAACCAGGAGCCTATGGTGTGGTGACTCTCCCCTTCTCTGTCA
GAGAAGGAATCAACATTTTCTTGGCTGGATTTGTTCCTACAGAAAATTTACGTTTTAGAGATGA
ATCTTTGACCTTCAAGGTATAGATATTTTGTATGATGAAAGGCAAAGTTTTGTCGCCAAGGCAA
TAAATTGTTTTCCTCAATGTTTTTCTTTTGTTTGAAGGTTGCTGAGACTCCACAAGAAAGTGCT
GAAGAGATACAGTCGTACGCTAGGTACAAATACCCCACGATGACCAAAACTCAAGGAAACTTCA
GGTTGAGAGTGTCGGAAGGTGAATTCACTGACTCTCAGATTATTGTAATGCTTGGGGAGAATGG
TACAGGGAAGACAACATTTATTCGGATGCTGGTATTCTCTTCTTCCATGATATGTTCTCTTGTG
GTTAGAGTTTTAGAAAGTACTGTACTGTAAAGTTGTAATATTGGTAATATTTGCAGGCCGGGTT
GTTGAAACCAGACGACACAGAAGGACCAGACAGAGAGATACCAGAATTCAATGTTTCGTATAAG
CCACAAAAGATCAGCCCAAAGTTTCAGAATTCAGTTAGGCACCTGCTACATCAAAAGATTCGAG
ATTCTTACATGCATCCACAATTTATGTCGGATGTGATGAAACCACTTCAGATTGAGCAGTTGAT
GGATCAAGAAGTTGTCAATCTCTCAGGAGGAGAATTGCAAAGGGTTGCATTAACTCTGTGCCTC
GGAAAGGTAATTATTTTGTTTCAGACGTCTATATGACGTAGTTGCTTTCTTTCTCTCAGTGATC
TCATGCATCCACAATGTGAATTCTTACAGCCTGCGGATATATACCTGATCGATGAGCCAAGTGC
ATATCTCGATTCTGAGCAACGTATTGTTGCTTCTAAAGTCATAAAGCGATTTATTCTCCACGCA
AAGAAAACTGCATTTGTAGTCGAGCATGACTTTATAATGGCGACCTATTTGGCAGACCGGGTCA
TTGTGTATGAAGGACAACCATCCATTGATTGTACTGCAAATTGTCCTCAATCACTGCTCAGTGG
AATGAATCTCTTCTTA
						
					

			
		

Sequences
Splice junction sequence	CTATTTGGCAGACCGGGTCATTGTGTATGAAGGACAACCATCCATTGATTGTACTGCAAATTGT CCTCAATCACTGCTCAGTGGAATGAATCTCTTCTTAtctgagcaaagcagtaactctcaggtgc gtgtgctctccgctggttccttagaacaatcggcacacgctttttcatttcaatcttcttcttc tactctta
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	TCTGAGCAAAGCAGTAACTCTCAGGTGCGTGTGCTCTCCGCTGGTTCCTTAGAACAATCGGCAC ACGCTTTTTCATTTCAATCTTCTTCTTCTACTCTTAAGTATCTCAGGTACTAATCTCGATTTCT CTATTTCTCGTCCATGGAGATTTAGATTTCAAGTCAGATGCTTTTCGATTTGTTACAGATGTAT AATTTTTGTAATCGATTGATTCGCAGCTTGGATTGTATTGAGCCATCGACATACCTTCAAAATT CTTATAATTGTATTGAAAGTGTTTGAATTTAATGTTTTTTTTTTTCTTTCTCTCGATTGTTTTG ATTTCTGGGCAAGTGTCAACTTTTGTAACAGATTAGTGACCTTTCTCTTTATAGATATGTGGAA GAATTTGGAATTTACAAATTCGGTTCACCATTTTTATCTGAAGCACTGAATTTGCGTTTTTCAA GCTTGAGTGAATATTATTTCTTGGCTCTTAAGATTTTGCATGTCAACTATTATTTCATCATTGT TAGCATCTTGTGGTGTTCAAGTTATTATTTTAAATATTGTTTGTGCTACTCTATAGTTATTCCC TATGTTGTTATTTCGTTCCTTTGCCTTAGCGTGACATCTTTATTTGGTATATTTGTATCTGTGT GATTTAGTTTCTTCAGGCTGTTAAACTATAGATTTCATGTATTTTGTAGGTCTGTTGAGAGATG GCAGATCGATTGACACGTATTGCTATTGTGAGTTCAGACCGTTGCAAGCCAAAGAAATGTCGCC AAGAGTGCAAGAAGAGTTGTCCTGTGGTCAAGACAGGTGTATATTTTTATTCCAAATTTGGATC TGTGGTCTTTCATGTGGATTTATTATTATTGTACTGTAATTGATTAGCTTTGTTATGTGCGTCA TGCCAATTAGTAGACAGAGAATGGTTAGGTGTTTATGTGAAGCCATTAGCTTATAGTTCCTACT TGAAGTTGTTGTAACTCTACAAATTTTTAGTGCCACTTGTTCATTAACTTGCCTTTTATCTTAG GAAAACTTTGTATTGAGGTGACTGTTGGTTCCAAGCTTGCTTTTATCTCAGAGGAGTTGTGTAT CGGTTGCGGTATTTGTGTGAAGGTATGTATGCATAGGCTCTTTCCGATATCCAAGATGCCTCTA GAAATGGCACCTAAACTGGGATGCTAAATGACTCTGTTGTTACACAATTGCAGAAATGCCCGTT TGAAGCTATTCAGATTATCAATCTTCCAAGAGACTTGGAGAAAGATACGACCCATCGTTATGGG GCAAACACTTTTAAGTTACACAGGTTCGTTTATCTACTATTTTTCCTGAAACAAATTGACCGCT CTTGTAGTTTTCAGACAATGAAATCTTTGTCTTTACTTCCAGGCTCCCAGTTCCAAGACCAGGG CAGGTGCTAGGGTTGGTTGGAACCAATGGTATTGGAAAATCAACTGCTCTGAAAATTTTGGCTG GAAAGCTCAAACCAAATTTGGGCCGTTTCACTGTAATAGCCTCTCTTGAGTTTCTAAACTTTTA TCTTCGAAATTTGGTCTCTTTCATAGTTGATGTGTTCATATATTCCTTGTTGAACAGAGTCCTC CAGACTGGCAAGAAATCTTGACTCACTTCCGTGGTTCAGAACTTCAAAACTACTTCACACGTAT TCTAGAAGATAATCTTAAGGTACAGTTGAAACTGATATTAATATTTTTCTCCATGAGGTAGCTA GGTATTATTTGATGTTTAAGCAGCTCAATTGAGCAAGTTCTGATACCCTGTGCATGGCAGGCCA TTATAAAGCCTCAATATGTCGACCACATCCCAAGAGCAGTTAAAGGCAATGTTGGAGAGGTCCT TGACCAGAAGGATGAGAGAGATAAGAAGGCAGAGCTCTGTGCTGATCTGGAGCTGAACCAGGTC ATTGACCGTGATGTTGAGAATTTATCTGGTGGTGAGCTGCAGAGGTTTGCAATCGCTGTTGTTG CCATACAAAATGCAGAGATTTACATGTTTGATGAACCATCTAGTTACCTCGATGTTAAGCAAAG ACTCAAAGCTGCTCAAGTTGTTCGTTCTCTCCTGAGGCCTAATAGGTTTGAATTTCCCAGCTTC TGAAGTTTTTTTTTCAAAAGGGATAAAAAATAAGGTACTTACATTGTTTTTTTTTTGTTTTTTT TTTGTTTCCCAGCTACGTCATTGTTGTGGAGCATGATCTCAGTGTTCTTGATTACTTGTCGGAT TTCATTTGCTGTCTGTATGGGAAACCAGGAGCCTATGGTGTGGTGACTCTCCCCTTCTCTGTCA GAGAAGGAATCAACATTTTCTTGGCTGGATTTGTTCCTACAGAAAATTTACGTTTTAGAGATGA ATCTTTGACCTTCAAGGTATAGATATTTTGTATGATGAAAGGCAAAGTTTTGTCGCCAAGGCAA TAAATTGTTTTCCTCAATGTTTTTCTTTTGTTTGAAGGTTGCTGAGACTCCACAAGAAAGTGCT GAAGAGATACAGTCGTACGCTAGGTACAAATACCCCACGATGACCAAAACTCAAGGAAACTTCA GGTTGAGAGTGTCGGAAGGTGAATTCACTGACTCTCAGATTATTGTAATGCTTGGGGAGAATGG TACAGGGAAGACAACATTTATTCGGATGCTGGTATTCTCTTCTTCCATGATATGTTCTCTTGTG GTTAGAGTTTTAGAAAGTACTGTACTGTAAAGTTGTAATATTGGTAATATTTGCAGGCCGGGTT GTTGAAACCAGACGACACAGAAGGACCAGACAGAGAGATACCAGAATTCAATGTTTCGTATAAG CCACAAAAGATCAGCCCAAAGTTTCAGAATTCAGTTAGGCACCTGCTACATCAAAAGATTCGAG ATTCTTACATGCATCCACAATTTATGTCGGATGTGATGAAACCACTTCAGATTGAGCAGTTGAT GGATCAAGAAGTTGTCAATCTCTCAGGAGGAGAATTGCAAAGGGTTGCATTAACTCTGTGCCTC GGAAAGGTAATTATTTTGTTTCAGACGTCTATATGACGTAGTTGCTTTCTTTCTCTCAGTGATC TCATGCATCCACAATGTGAATTCTTACAGCCTGCGGATATATACCTGATCGATGAGCCAAGTGC ATATCTCGATTCTGAGCAACGTATTGTTGCTTCTAAAGTCATAAAGCGATTTATTCTCCACGCA AAGAAAACTGCATTTGTAGTCGAGCATGACTTTATAATGGCGACCTATTTGGCAGACCGGGTCA TTGTGTATGAAGGACAACCATCCATTGATTGTACTGCAAATTGTCCTCAATCACTGCTCAGTGG AATGAATCTCTTCTTA

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.19114374

Conservation Information
Conserved circRNAs	NA
PMCS	0.19114374

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017;Chen et al., 2017a

circRNA

Detail information of AT4G19210_circ_g.1

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