Plant Circular RNA Database

Detail information of Os02g0215000_circ_g.8

			
						 General Information
					
						CircRNA Name
						Os02g0215000_circ_g.8
					
						ID in PlantcircBase
						osa_circ_013820
					
						Alias
						Os_ciR2675
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 6436181-6439537  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, find_circ
					
						Parent gene
						
							Os02g0215000						
					
						Parent gene annotation
						
							Conserved hypothetical protein. (Os02t0215000-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os02g0215000_circ_g.1 Os02g0215000_circ_g.2 Os02g0215000_circ_g.3 Os02g0215000_circ_g.4 Os02g0215000_circ_g.5 Os02g0215000_circ_g.6 Os02g0215000_circ_g.7 						
					
						Support reads
						5/2
					
						Tissues
						root/shoot, root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os02t0215000-01:8

General Information
CircRNA Name	Os02g0215000_circ_g.8
ID in PlantcircBase	osa_circ_013820
Alias	Os_ciR2675
Organism	Oryza sativa
Position	chr2: 6436181-6439537 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer, find_circ
Parent gene	Os02g0215000
Parent gene annotation	Conserved hypothetical protein. (Os02t0215000-01)
Parent gene strand	-
Alternative splicing	Os02g0215000_circ_g.1 Os02g0215000_circ_g.2 Os02g0215000_circ_g.3 Os02g0215000_circ_g.4 Os02g0215000_circ_g.5 Os02g0215000_circ_g.6 Os02g0215000_circ_g.7
Support reads	5/2
Tissues	root/shoot, root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os02t0215000-01:8

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							ATCATGAAATAGTCATCCATCGAATGAATTCTAGGTGCATTTCCACCATTCTCAACTTCAAGGT
CACGCAATGCCTTTGCAAGATAGCTCTTTCCACTACcttgatcatgtccattatctagtgattc
agacacagccttctgtgtgttttcagcttcagtactagttgctgtgttactggccccatcagtg
tcttctgt

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 657
Transcript exons: 6436181-6436292,6436373-6436417,6436522-6436626,6436846-
6436896,6438158-6438213,6438684-6438753,6439188-6439292,
6439425-6439537
CTTGATCATGTCCATTATCTAGTGATTCAGACACAGCCTTCTGTGTGTTTTCAGCTTCAGTACT
AGTTGCTGTGTTACTGGCCCCATCAGTGTCTTCTGTCTCCATATCCACCTCTTGAATGGAATGC
TCGCGTAGATTGTCATCGTTGAATAATGAATGGATGTCTAGTCGAAGATATAGTGGTGGAGCCT
CTTCCCAGTCTGCTGCCATCTTGTTCACATCATCTACTGTAAACCCATGCACATTCCTAGCAGC
ACAGCCTGTTGGATCCTTGTATGGTGCCTCCAGCAGGTACACTTCATAGCCTGATTTCTTCGCA
CTTGCCCAAAATTGAGCAAAATCAGCTACCCGCAGATTGCGGTCATCCACAATCACAAATGTAA
AATTCCCTTCATCAAGGGTCTTCTTAAATGCGTTCAACATGCTTGATCTGTACGTCTCCTCCAT
CTCAGGCTCATAACAGTACTCGATCACTTTCTTGGTCAGCTGCTTTCTTCCTTTGGATGTACTA
GAAGATTTTGACCCTTCATTGTCTTCAACTTTCTTCTCAACCTCAATCATGAAATAGTCATCCA
TCGAATGAATTCTAGGTGCATTTCCACCATTCTCAACTTCAAGGTCACGCAATGCCTTTGCAAG
ATAGCTCTTTCCACTAC
						
					

						Genomic sequence
						
							CTTGATCATGTCCATTATCTAGTGATTCAGACACAGCCTTCTGTGTGTTTTCAGCTTCAGTACT
AGTTGCTGTGTTACTGGCCCCATCAGTGTCTTCTGTCTCCATATCCACCTATTTGAAGTACAAT
AGATTTTGAGCACATAGATCTCTTTAAGTGACTGGTAGGGTAGGGATATACTGATATGGGATAC
CTCTTGAATGGAATGCTCGCGTAGATTGTCATCGTTGAATAATGACTAAAAATATTAATACAAA
ACATGAAAAACACGATTAATCATGTATCTAATAGCATGTCTTAAGTCTTAACCGCCAATCATAT
GAATACTATCAGAAAACATACATGGATGTCTAGTCGAAGATATAGTGGTGGAGCCTCTTCCCAG
TCTGCTGCCATCTTGTTCACATCATCTACTGTAAACCCATGCACATTCCTAGCAGCACAGCCCT
GTTGTTCACAAGATATCACATCATCTACTGTAAACCCATGTACTTACTGGAACTGAAATACATT
CTCAGATGTTTATAATATATGGTGTAAATATTGGTAATATAACTAATGGGAGTGCAAACAAGAT
TTTTTACAGCCTGATACATATATGAATCAAATAAATTCAATATGATTTTCCCAGGACTGCCTAG
ATAGCTTATAGTTAAGAAAACTTACTGTTGGATCCTTGTATGGTGCCTCCAGCAGGTACACTTC
ATAGCCTGATTTCTACAAAAGGAATAGAACAGTGAACTTACTTTCAAATGACTACCAACAAGAT
AAAATGATTCAGAGAATAAAATTCCAAAGAACAAGGTATAGGAACAGAGTGCCTCCTGAAATGG
CAAGGTATAATCCAACAAAATTTGCACAGATTAGTCTAGAAGTTACAATCATATGAAACGGTCA
CTTGTCATATGGGCATATCATCTAAATTCTAAGAAGTCAATAGTGCCATTAAAGTGGAAGTCAA
AGATGCTTTGGACCAACTGAAGCATCAAGAACCACACGGATACACAAATACCGAATTCATTTTA
GCAACTCGACAGTTGATTCAGGGCATGTAAAACAAGCAGATAACCAAAAACCCTTGAAAATAAA
CGAGCAAAAGGTTTATATTATTGGGCAAACCATGTAATATTGAAAGAAAGCACATATATGCAGT
TAATTGCATACAGAAACCAGAAATACAGCTAGCGATAAGTCTGCACTAAGAAACAACCAAATAA
CCCCTCTGGTGTATAGGTACATTCAATTGCAGCAAAGAAGGGAGAGAAGGGTCCAATAAACTGG
ACTGCCTTAGTGTCTTAGTGGTAATAAATGCACAGTGCTATTAATTAAGGCTTTGGGACGCGAA
TTCTTGTAGGAATTATCAATTCCAGCAGGAATAAAGAAAAAAATGGTTTCCAAACAGGGCATTA
ATTTATGACAGTTACTTAATGCTATGCCTCTCATACTATCCACTACACATATGTCAAGGGGGTG
CTAGCAGGATAACTATAATATTCCCTCCTTTTCAAAATATAAGGCATGTTTTGTTTCGTTAGGA
CAAGGCTGTGACCCACAATTGCTCTATTAGGATATTATTTATGTGATACAGAAGCATAATCATA
ATTAAGTGCTTTTGAATACGAATCTAACAAATTCAATTTCGTGTCACAAAAATTATATCCTAAT
AGAGTAATTGTTGGTCAAAGTCTTGTGCTAGCAAAAAAAATATACCTTATATTTTGAAACAAAG
GGAGTAGTATTAAGAGACCATTAATAAAAAAGGAAAGAGAAAATAGAAGATTCGTAGTGTATCC
AAGATAAGTTAATAGTGTTTTCCAGCCTTATAATTTGCACTAAAGTATGCTTTTCAAGTGCAGG
CCACCTCTTGTTCTAAGGGGAGAAAAAGCAGAACCCCTCTTAAGGATTCAAAACCTTAACAAAA
AGCTCCAACAAGCAATGTAAATTCTCACAGTTGACGCAACAGAGACTGAGAGTTTACCTTCGCA
CTTGCCCAAAATTGAGCAAAATCAGCTACCCGCAGATTGCGGTCATCCACTAAAAACGGGCAGG
GATACCAGCAATAAACAAGTCAGTTACCACAAATCCAGCATCAGCCATTGCTAAGAATGAAGGC
ATCACCCGGTACAATGCCATTGTAGGCCTGTTGCTTAATTGAATGTTTCAAACAGTACAAAACA
TAAACCACTAGTACAAATGGATGTCCTGTCATCCTCCCAATGTCTAGGAACCCATTGCCTATGT
CCTAATCCCAGAAAATGGCCACCAAACATTGAACTTAATAAGACAAAGATCCAATCATGAAGAA
AAGCCAATAGATTGAAATAATATGATGTCAATGAATATATGATAAAGTTTGCATAGGGCTTTTT
CCGTACTCAATGAAATTTATGATAAATAATGAGGCAGAACATAATCATAACCACCAAAGTAATT
ACCACCACCATGAATTAAATCATTAAATCATTAATTCATCCTAAAGCAACAATATTTAAAATAA
CTCATACCAATCACAAATGTAAAATTCCCTTCATCAAGGGTCTTCTTAAATGCGTTCAACATGC
TTGATCTGTACGTCTGTCCAATAAAGAAGAAATTTAGCAAAATTACTACATCAAATGATAAATA
GTGAAATACATGAAAAAAACAATTACTCATGCTGCAATTATCGAAAATGTGAATGATGGACAAT
ACTCCCATGTACAGTATACAGATTCCACAACAGAAACACATCTATGTGGGTTATGAAGTATACT
GCAGTCTGGGAGATCATATCCTTTCAACATCAAAATGCCCAGTGCTGCAACTTCTAGGCGATGT
GCTCTGATATTGTTATTTAAAGTAAACCTGGGGAATGTGACATTTCTAAAGGTTTACATTAGTT
CTAATGAGTAAAGACTAATTTTTCAGGCAAATGAAACAGTTTGCCATAACATAGCTCCAATAAT
TGGCAATAGCATTCATAATAAATGAGATAAAGGAATGAAGTCAAACAAAAACTATTTCATCACC
TCCTCCATCTCAGGCTCATAACAGTACTCGATCACTTTCTTGGTCAGCTGCTTTCTTCCTTTGG
ATGTACTAGAAGATTTTGACCCTTCATTGTCTTCAACTTTCTAAGAGCATTAAACCAAGTTACA
AGACAGAATACCCATCAAATAAAACAGAAATGTAATAAGCAATTCTGAGTATAGTGTGACAAAT
TAGTGTACAGGGTTCATGATAGGTTCTGCTATTCTTCAACTGACCTTCTCAACCTCAATCATGA
AATAGTCATCCATCGAATGAATTCTAGGTGCATTTCCACCATTCTCAACTTCAAGGTCACGCAA
TGCCTTTGCAAGATAGCTCTTTCCACTAC
						
					

			
		

Sequences
Splice junction sequence	ATCATGAAATAGTCATCCATCGAATGAATTCTAGGTGCATTTCCACCATTCTCAACTTCAAGGT CACGCAATGCCTTTGCAAGATAGCTCTTTCCACTACcttgatcatgtccattatctagtgattc agacacagccttctgtgtgttttcagcttcagtactagttgctgtgttactggccccatcagtg tcttctgt
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 657 Transcript exons: 6436181-6436292,6436373-6436417,6436522-6436626,6436846- 6436896,6438158-6438213,6438684-6438753,6439188-6439292, 6439425-6439537 CTTGATCATGTCCATTATCTAGTGATTCAGACACAGCCTTCTGTGTGTTTTCAGCTTCAGTACT AGTTGCTGTGTTACTGGCCCCATCAGTGTCTTCTGTCTCCATATCCACCTCTTGAATGGAATGC TCGCGTAGATTGTCATCGTTGAATAATGAATGGATGTCTAGTCGAAGATATAGTGGTGGAGCCT CTTCCCAGTCTGCTGCCATCTTGTTCACATCATCTACTGTAAACCCATGCACATTCCTAGCAGC ACAGCCTGTTGGATCCTTGTATGGTGCCTCCAGCAGGTACACTTCATAGCCTGATTTCTTCGCA CTTGCCCAAAATTGAGCAAAATCAGCTACCCGCAGATTGCGGTCATCCACAATCACAAATGTAA AATTCCCTTCATCAAGGGTCTTCTTAAATGCGTTCAACATGCTTGATCTGTACGTCTCCTCCAT CTCAGGCTCATAACAGTACTCGATCACTTTCTTGGTCAGCTGCTTTCTTCCTTTGGATGTACTA GAAGATTTTGACCCTTCATTGTCTTCAACTTTCTTCTCAACCTCAATCATGAAATAGTCATCCA TCGAATGAATTCTAGGTGCATTTCCACCATTCTCAACTTCAAGGTCACGCAATGCCTTTGCAAG ATAGCTCTTTCCACTAC
Genomic sequence	CTTGATCATGTCCATTATCTAGTGATTCAGACACAGCCTTCTGTGTGTTTTCAGCTTCAGTACT AGTTGCTGTGTTACTGGCCCCATCAGTGTCTTCTGTCTCCATATCCACCTATTTGAAGTACAAT AGATTTTGAGCACATAGATCTCTTTAAGTGACTGGTAGGGTAGGGATATACTGATATGGGATAC CTCTTGAATGGAATGCTCGCGTAGATTGTCATCGTTGAATAATGACTAAAAATATTAATACAAA ACATGAAAAACACGATTAATCATGTATCTAATAGCATGTCTTAAGTCTTAACCGCCAATCATAT GAATACTATCAGAAAACATACATGGATGTCTAGTCGAAGATATAGTGGTGGAGCCTCTTCCCAG TCTGCTGCCATCTTGTTCACATCATCTACTGTAAACCCATGCACATTCCTAGCAGCACAGCCCT GTTGTTCACAAGATATCACATCATCTACTGTAAACCCATGTACTTACTGGAACTGAAATACATT CTCAGATGTTTATAATATATGGTGTAAATATTGGTAATATAACTAATGGGAGTGCAAACAAGAT TTTTTACAGCCTGATACATATATGAATCAAATAAATTCAATATGATTTTCCCAGGACTGCCTAG ATAGCTTATAGTTAAGAAAACTTACTGTTGGATCCTTGTATGGTGCCTCCAGCAGGTACACTTC ATAGCCTGATTTCTACAAAAGGAATAGAACAGTGAACTTACTTTCAAATGACTACCAACAAGAT AAAATGATTCAGAGAATAAAATTCCAAAGAACAAGGTATAGGAACAGAGTGCCTCCTGAAATGG CAAGGTATAATCCAACAAAATTTGCACAGATTAGTCTAGAAGTTACAATCATATGAAACGGTCA CTTGTCATATGGGCATATCATCTAAATTCTAAGAAGTCAATAGTGCCATTAAAGTGGAAGTCAA AGATGCTTTGGACCAACTGAAGCATCAAGAACCACACGGATACACAAATACCGAATTCATTTTA GCAACTCGACAGTTGATTCAGGGCATGTAAAACAAGCAGATAACCAAAAACCCTTGAAAATAAA CGAGCAAAAGGTTTATATTATTGGGCAAACCATGTAATATTGAAAGAAAGCACATATATGCAGT TAATTGCATACAGAAACCAGAAATACAGCTAGCGATAAGTCTGCACTAAGAAACAACCAAATAA CCCCTCTGGTGTATAGGTACATTCAATTGCAGCAAAGAAGGGAGAGAAGGGTCCAATAAACTGG ACTGCCTTAGTGTCTTAGTGGTAATAAATGCACAGTGCTATTAATTAAGGCTTTGGGACGCGAA TTCTTGTAGGAATTATCAATTCCAGCAGGAATAAAGAAAAAAATGGTTTCCAAACAGGGCATTA ATTTATGACAGTTACTTAATGCTATGCCTCTCATACTATCCACTACACATATGTCAAGGGGGTG CTAGCAGGATAACTATAATATTCCCTCCTTTTCAAAATATAAGGCATGTTTTGTTTCGTTAGGA CAAGGCTGTGACCCACAATTGCTCTATTAGGATATTATTTATGTGATACAGAAGCATAATCATA ATTAAGTGCTTTTGAATACGAATCTAACAAATTCAATTTCGTGTCACAAAAATTATATCCTAAT AGAGTAATTGTTGGTCAAAGTCTTGTGCTAGCAAAAAAAATATACCTTATATTTTGAAACAAAG GGAGTAGTATTAAGAGACCATTAATAAAAAAGGAAAGAGAAAATAGAAGATTCGTAGTGTATCC AAGATAAGTTAATAGTGTTTTCCAGCCTTATAATTTGCACTAAAGTATGCTTTTCAAGTGCAGG CCACCTCTTGTTCTAAGGGGAGAAAAAGCAGAACCCCTCTTAAGGATTCAAAACCTTAACAAAA AGCTCCAACAAGCAATGTAAATTCTCACAGTTGACGCAACAGAGACTGAGAGTTTACCTTCGCA CTTGCCCAAAATTGAGCAAAATCAGCTACCCGCAGATTGCGGTCATCCACTAAAAACGGGCAGG GATACCAGCAATAAACAAGTCAGTTACCACAAATCCAGCATCAGCCATTGCTAAGAATGAAGGC ATCACCCGGTACAATGCCATTGTAGGCCTGTTGCTTAATTGAATGTTTCAAACAGTACAAAACA TAAACCACTAGTACAAATGGATGTCCTGTCATCCTCCCAATGTCTAGGAACCCATTGCCTATGT CCTAATCCCAGAAAATGGCCACCAAACATTGAACTTAATAAGACAAAGATCCAATCATGAAGAA AAGCCAATAGATTGAAATAATATGATGTCAATGAATATATGATAAAGTTTGCATAGGGCTTTTT CCGTACTCAATGAAATTTATGATAAATAATGAGGCAGAACATAATCATAACCACCAAAGTAATT ACCACCACCATGAATTAAATCATTAAATCATTAATTCATCCTAAAGCAACAATATTTAAAATAA CTCATACCAATCACAAATGTAAAATTCCCTTCATCAAGGGTCTTCTTAAATGCGTTCAACATGC TTGATCTGTACGTCTGTCCAATAAAGAAGAAATTTAGCAAAATTACTACATCAAATGATAAATA GTGAAATACATGAAAAAAACAATTACTCATGCTGCAATTATCGAAAATGTGAATGATGGACAAT ACTCCCATGTACAGTATACAGATTCCACAACAGAAACACATCTATGTGGGTTATGAAGTATACT GCAGTCTGGGAGATCATATCCTTTCAACATCAAAATGCCCAGTGCTGCAACTTCTAGGCGATGT GCTCTGATATTGTTATTTAAAGTAAACCTGGGGAATGTGACATTTCTAAAGGTTTACATTAGTT CTAATGAGTAAAGACTAATTTTTCAGGCAAATGAAACAGTTTGCCATAACATAGCTCCAATAAT TGGCAATAGCATTCATAATAAATGAGATAAAGGAATGAAGTCAAACAAAAACTATTTCATCACC TCCTCCATCTCAGGCTCATAACAGTACTCGATCACTTTCTTGGTCAGCTGCTTTCTTCCTTTGG ATGTACTAGAAGATTTTGACCCTTCATTGTCTTCAACTTTCTAAGAGCATTAAACCAAGTTACA AGACAGAATACCCATCAAATAAAACAGAAATGTAATAAGCAATTCTGAGTATAGTGTGACAAAT TAGTGTACAGGGTTCATGATAGGTTCTGCTATTCTTCAACTGACCTTCTCAACCTCAATCATGA AATAGTCATCCATCGAATGAATTCTAGGTGCATTTCCACCATTCTCAACTTCAAGGTCACGCAA TGCCTTTGCAAGATAGCTCTTTCCACTAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.212367883

Conservation Information
Conserved circRNAs	NA
PMCS	0.212367883

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							6439509-6436243(+)
6439462-6436199(+)
6436197-6439441(-)
6439459-6436183(-)
						
						Potential amino acid sequence
						
							MPLQDSSFHYLDHVHYLVIQTQPSVCFQLQY*(+)
MNSRCISTILNFKVTQCLCKIALSTTLIMSII*(+)
MDMIKVVERAILQRHCVTLKLRMVEMHLEFIRWMTIS*(-)
MDDYFMIEVEKKVEDNEGSKSSSTSKGRKQLTKKVIEYCYEPEMEETYRSSMLNAFKKTLDEGN
FTFVIVDDRNLRVADFAQFWASAKKSGYEVYLLEAPYKDPTGCAARNVHGFTVDDVNKMAADWE
EAPPLYLRLDIHSLFNDDNLREHSIQEVDMETEDTDGASNTATSTEAENTQKAVSESLDNGHDQ
GSGKSYLAKALRDLEVENGGNAPRIHSMDDYFMIEVEKKVEDNEGSKSSSTSKGRKQLTKKVIE
YCYEPEMEETYRSSMLNAFKKTLDEGNFTFVIVDDRNLRVADFAQFWASAKKSGYEVYLLEAPY
KDPTGCAARNVHGFTVDDVNKMAADWEEAPPLYLRLDIHSLFNDDNLREHSIQEVDMETEDTDG
ASNTATSTEAENTQKAVSESLDNGHDQGSGKSYLAKALRDLEVENGGNAPRIHSMDDYFMIEVE
KKVEDNEGSKSSSTSKGRKQLTKKVIEYCYEPEMEETYRSSMLNAFKKTLDEGNFTFVIVDDRN
LRVADFAQFWASAKKSGYEVYLLEAPYKDPTGCAARNVHGFTVDDVNKMAADWEEAPPLYLRLD
IHSLFNDDNLREHSIQEVDMETEDTDGASNTATSTEAENTQKAVSESLDNGHDQGSGKSYLAKA
LRDLEVENGGNAPRIHSMDDYFMIEVEKKVEDNEGSKSSSTSKGRKQLTKKVIEYCYEPEMEET
YRSSMLNAFKKTLDEGNFTFVIVDDRNLRVADFAQFWASAKKSGYEVYLLEAPYKDPTGCAARN
VHGFTVDDVNKMAADWEEAPPLYLRLDIHSLFNDDNLREHSIQEVDMETEDTDGASNTATSTEA
ENTQKAVSESLDNGHDQ(-)
						
						Sponge-miRNAs
						
							osa-miR1442 						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	6439509-6436243(+) 6439462-6436199(+) 6436197-6439441(-) 6439459-6436183(-)
Potential amino acid sequence	MPLQDSSFHYLDHVHYLVIQTQPSVCFQLQY(+) MNSRCISTILNFKVTQCLCKIALSTTLIMSII(+) MDMIKVVERAILQRHCVTLKLRMVEMHLEFIRWMTIS*(-) MDDYFMIEVEKKVEDNEGSKSSSTSKGRKQLTKKVIEYCYEPEMEETYRSSMLNAFKKTLDEGN FTFVIVDDRNLRVADFAQFWASAKKSGYEVYLLEAPYKDPTGCAARNVHGFTVDDVNKMAADWE EAPPLYLRLDIHSLFNDDNLREHSIQEVDMETEDTDGASNTATSTEAENTQKAVSESLDNGHDQ GSGKSYLAKALRDLEVENGGNAPRIHSMDDYFMIEVEKKVEDNEGSKSSSTSKGRKQLTKKVIE YCYEPEMEETYRSSMLNAFKKTLDEGNFTFVIVDDRNLRVADFAQFWASAKKSGYEVYLLEAPY KDPTGCAARNVHGFTVDDVNKMAADWEEAPPLYLRLDIHSLFNDDNLREHSIQEVDMETEDTDG ASNTATSTEAENTQKAVSESLDNGHDQGSGKSYLAKALRDLEVENGGNAPRIHSMDDYFMIEVE KKVEDNEGSKSSSTSKGRKQLTKKVIEYCYEPEMEETYRSSMLNAFKKTLDEGNFTFVIVDDRN LRVADFAQFWASAKKSGYEVYLLEAPYKDPTGCAARNVHGFTVDDVNKMAADWEEAPPLYLRLD IHSLFNDDNLREHSIQEVDMETEDTDGASNTATSTEAENTQKAVSESLDNGHDQGSGKSYLAKA LRDLEVENGGNAPRIHSMDDYFMIEVEKKVEDNEGSKSSSTSKGRKQLTKKVIEYCYEPEMEET YRSSMLNAFKKTLDEGNFTFVIVDDRNLRVADFAQFWASAKKSGYEVYLLEAPYKDPTGCAARN VHGFTVDDVNKMAADWEEAPPLYLRLDIHSLFNDDNLREHSIQEVDMETEDTDGASNTATSTEA ENTQKAVSESLDNGHDQ(-)
Sponge-miRNAs	osa-miR1442
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os02g0215000_circ_g.8

Address

Any questions?

Supported by