Detail information of Os05g0594700_circ_g.1


General Information
CircRNA Name Os05g0594700_circ_g.1
ID in PlantcircBase osa_circ_042216
Alias NA
Organism Oryza sativa
Position chr5: 29608222-29608346  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method CIRI-long
Parent gene Os05g0594700
Parent gene annotation Similar to Hv711N16.16 (Fragment). (Os05t0594700-01);Similar to
Hv711N16.16 (Fragment). (Os05t0594700-02)
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   CA-TG
Number of exons covered Os05t0594700-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCTCCTCCTCGATCTCCTTCCTCTCAATTCCATCCATCGTCTAGTCTTCTTCCCAAACCCAAgt
ggtggtggtggagactggagagtggaggcgaaaaaagaaacgaatcgaatctctcgtccct
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 125
Transcript exons: 29608222-29608346
GTGGTGGTGGTGGAGACTGGAGAGTGGAGGCGAAAAAAGAAACGAATCGAATCTCTCGTCCCTC
CTCCTCCTCGATCTCCTTCCTCTCAATTCCATCCATCGTCTAGTCTTCTTCCCAAACCCAA

Genomic sequence GTGGTGGTGGTGGAGACTGGAGAGTGGAGGCGAAAAAAGAAACGAATCGAATCTCTCGTCCCTC
CTCCTCCTCGATCTCCTTCCTCTCAATTCCATCCATCGTCTAGTCTTCTTCCCAAACCCAA
Conservation Information
Conserved circRNAs NA
PMCS 0.179358133
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study