Plant Circular RNA Database

Detail information of Os02g0474300_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os02g0474300_circ_g.1
					
						ID in PlantcircBase
						osa_circ_014664
					
						Alias
						Os02circ12763/Os_ciR459
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 16174152-16177282  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							u-circRNA							
									
						Identification method
						CIRI, SMALT, Segemehl, circRNA_finder, find_circ
					
						Parent gene
						
							Os02g0474300						
					
						Parent gene annotation
						
							Similar to DNA topoisomerase. (Os02t0474300-01)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os02g0474300_circ_g.2 						
					
						Support reads
						6/70/4
					
						Tissues
						leaf and panicle/root/seed
					
						Exon boundary  
						
							No-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os02t0474300-01:6

General Information
CircRNA Name	Os02g0474300_circ_g.1
ID in PlantcircBase	osa_circ_014664
Alias	Os02circ12763/Os_ciR459
Organism	Oryza sativa
Position	chr2: 16174152-16177282 JBrowse»
Reference genome	IRGSP-1.0.38
Type	u-circRNA
Identification method	CIRI, SMALT, Segemehl, circRNA_finder, find_circ
Parent gene	Os02g0474300
Parent gene annotation	Similar to DNA topoisomerase. (Os02t0474300-01)
Parent gene strand	+
Alternative splicing	Os02g0474300_circ_g.2
Support reads	6/70/4
Tissues	leaf and panicle/root/seed
Exon boundary	No-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os02t0474300-01:6

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CGTCTCTGCTGGATCAACTGAATGGAAAGGCCTTCTGAAAGATTTTTGGGAACGATTCAATAAA
TATTGTGGCAATGCTAGTCGCCTTCAAGTCAGGAAGattcaagttgatattggtaattctaaag
gagacatgatttttcattcgtctgcatcaaatcttgacttcaagggataccaagctgtatatga
tgtaagtt

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 147
Transcript exons: 16174152-16174222,16177207-16177282
ATTCAAGTTGATATTGGTAATTCTAAAGGAGACATGATTTTTCATTCGTCTGCATCAAATCTTG
ACTTCAAGAAAGGCCTTCTGAAAGATTTTTGGGAACGATTCAATAAATATTGTGGCAATGCTAG
TCGCCTTCAAGTCAGGAAG
Transcript length: 151
Transcript exons: 16174152-16174232,16177213-16177282
ATTCAAGTTGATATTGGTAATTCTAAAGGAGACATGATTTTTCATTCGTCTGCATCAAATCTTG
ACTTCAAGGGATACCAACCTTCTGAAAGATTTTTGGGAACGATTCAATAAATATTGTGGCAATG
CTAGTCGCCTTCAAGTCAGGAAG
Transcript length: 156
Transcript exons: 16174152-16174223,16177199-16177282
ATTCAAGTTGATATTGGTAATTCTAAAGGAGACATGATTTTTCATTCGTCTGCATCAAATCTTG
ACTTCAAGACTGAATGGAAAGGCCTTCTGAAAGATTTTTGGGAACGATTCAATAAATATTGTGG
CAATGCTAGTCGCCTTCAAGTCAGGAAG
						
					

						Genomic sequence
						
							ATTCAAGTTGATATTGGTAATTCTAAAGGAGACATGATTTTTCATTCGTCTGCATCAAATCTTG
ACTTCAAGGGATACCAAGCTGTATATGATGTAAGTTGTACATTTTATGTATCTATGCTTCTTGC
ATCCTCTATACATTCAGAACATCCTGTATAGTTCACTTTTCTTTGCCTAAGTTTTTCTATATCC
TGCCTCAACCTTTTAGGAAAATCTGTTTAATACTTTAATGTCTTCTAAATGCGACCGTCCACTT
TCTTCTGTGCTTCTGTTAAGAAAATGTGTTACCTTTGGAGATTGGATGATCAAAATTGAGGACT
ATATTAATCTGTGCCTAACATTTACTTTAGCTTGCTTAACTCAGTAATGGGAAAATATGTTGCC
CTTTTAGGACACGGAAGCAAGTCCTTCCAGTAACAATTCTGAGGATGATGCTGTTCATCAGGAT
AACTTTGAGGCCTTGTCCAAATTAAAGGTCAGCAGCTGTTAAATTACCTCAACGGTCCACTTCC
TATGACTTTTTTGAAGCTAATGCTTATTGCTGCCTGTCATTGAACTATATCAGCATGTTATTGA
CTTATTGTTGCATTTCTTTTTCTCAGGTGAAGGACTTGATGTCTCCAGTTAACGTTCATCTTGC
ACAGAACTTTACTAAACCTCCATCACGTTATTCCGAGAGTGCATTGGTTAGTACTAATACCTAT
ATGTTACTCTTTTATTTGTTCATTCTGAGCCATGCCTGCGATAGAAAAATGTTCCTTTTATTGG
GCTTTCTCTGTAATTTAAGAATGTAAGGTTTCTTCCTTGGTACCTGCAGATTAAAAGACTAGAA
GAACTTGGAATCGGAGGGCCATCCACATACTCTTCTATAATGAAAGTATTGCAGGTGCCATATT
CCTATGACCCACTCTCTTAGATCATGATATGCCCAAAATATAACCCATTGCCTTTTTTCATTTT
CATATATATGCTGATTTTTGGGTTGGATGTTATGAACAAACTATGTAGCTTACAGCATGTTTGT
GCTGGGTTGCTTTGCTTATGTTCCTGTGGTGCTGCATATGCCATGTGGTGCAACACAGGTCATA
TGGTAACTGTTGGACTTCAATTTACTTGCATCACCTTGGACCTTTCGAATCCAATGGAAGTTGA
GTTGTATGTGGTTTGCAACGTGGAGCACTGGGGTCAGCACATACGTGGTCAGCTTGGCATTAAG
CTGTGATCTGGCTTTAGAGTTCTTTGTAACATAATCTAAATCTGGAAACCAGGAGATACTGTAT
CTATGATGTTTGCCTGCCATTGGATGCAAGTCCATCTACAAATATATGACATAAATAAGGAAAG
GTTCATAAAACATATCAGCCGCAAGACCCCAACTTGGATAGGCTGAGATTGATTAGGATCATCC
CTGGGCAAAGTAGTACAACATACAATTTCTTTTTCAAATGTACATCCAGAGATGTTTGTTTTTG
TTGGGGTCAACCACAATGTTACATGGACAAAACAAACAGTTGCAAAATAGTTGGAACTTGCATC
ATCATTAAATTAACAATGACTCAAGCCACATGGATAACAGTGTTTACCTCTTGCTATTCAGGAT
CGTAACCATGTGACAGTAAAAGGTCAAGTTGTGCACCCCGAATTCCGTGGTCGGATGGTAGGTT
GTTTGCTCCTTATGTCATTTCCTTTTAGAAAGGTCTTATTTGGCAATAACATCTACAATCCTGA
TCACACATTGAATTTCTGTTATATTGATTTAAATAAAAGATGATACCTCTAGCTATATGTATTA
CTTGATCATATAATCCAATTGTGCCAAAGCATAAACCTTGTAAGGAAAATTACAGGTTAACTAT
AGTCCCTAAAGTCTTCAAGGCACCTAAACTATTTTTTATATGTGTATATACGATTCTTTCACTT
CTCGCATCAATGTTGCTTATGGTAACTTTAATTAATTAAGTTGTTTTATTTCTTCTATTTTTGA
CATATGTTAACTGCCATCTCTTCCTTAGGTCTCAGCATTTCTTACACATCACTTCTCAGAAGTT
GCAGATCTCAGCTTTACTGCTAACTTGGAGACTGAGGTAGTGAACAATTCTCAGTTTGTAGGTT
ATATCTACATCCCCTTTCTTTCTTATTCTTGAGATCAGAAACCAGCATAAGCTGGCTAGTTACT
GCCACAGATTTGGTCAATGTGAATCCCAGTAATTTTGCAGTTTGATATCAGTATGAAAGTTTAG
TCACACTTGTTTCAGAAGAGAATCTTAAACCCCATGTGCATAGAATAGTTTTTAAAAAATGTTT
GTTTCCTTGTCCGTAATTGTTCTTGCATTTGAGACACATTGGTGGTATTTTATAGAAATGTGAA
AATGACTAAATACAGAAGTTTTACTTGAGACTGGAGCTTGTTTGGTAAGTTTTTGCCTGAACTT
GAGACTGGAGCAGGGCTGTCCTGGAAAAGCGCTTTACACCAAATAACTGGACAATACATTTATT
GTGTAAACCCCTCTACTTTGTGATGTTGTTCATATGCTAATGTGCACCCCTTGTCAATTCTTTT
TAACAAACAATGTTGTTACTACCAGGATGTCATTTTCTGATATGCCCATTTCTCTTGCACTTTC
TGTTTGAGCAACATCAAGCAGTGTATCTGACTTGTGTTAAAAATAGAATTGTTGGCATATTGAT
AAAAATACACAAAGAAAGAAAAGGTTGATGAATATATGAACATCTTGAATGAGATATGCTAGTA
TATATGATGTCAATGAAAGTATTCTTGAAAATATTCTTATCACTCTACGTCCACTGACATGGGC
TGGTATATGTGAAACCATAAAAACTTGGAGATAGATCTAAAAAATCTGATTAAATTTTGAAATT
TTTCTCCAAGTTTTTCCCATCATGATAACTTAACCAGCAATTGTTATATTCTTATGAACAGCTA
GCCCGCTTCACTAGTCCTAATATGATAATTCTGAAGTTGGTATAAACATACTAATATCCCTTTC
CTACTGCTTTATTAGCTTGATAACGTCTCTGCTGGATCAACTGAATGGAAAGGCCTTCTGAAAG
ATTTTTGGGAACGATTCAATAAATATTGTGGCAATGCTAGTCGCCTTCAAGTCAGGAAG
						
					

			
		

Sequences
Splice junction sequence	CGTCTCTGCTGGATCAACTGAATGGAAAGGCCTTCTGAAAGATTTTTGGGAACGATTCAATAAA TATTGTGGCAATGCTAGTCGCCTTCAAGTCAGGAAGattcaagttgatattggtaattctaaag gagacatgatttttcattcgtctgcatcaaatcttgacttcaagggataccaagctgtatatga tgtaagtt
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 147 Transcript exons: 16174152-16174222,16177207-16177282 ATTCAAGTTGATATTGGTAATTCTAAAGGAGACATGATTTTTCATTCGTCTGCATCAAATCTTG ACTTCAAGAAAGGCCTTCTGAAAGATTTTTGGGAACGATTCAATAAATATTGTGGCAATGCTAG TCGCCTTCAAGTCAGGAAG Transcript length: 151 Transcript exons: 16174152-16174232,16177213-16177282 ATTCAAGTTGATATTGGTAATTCTAAAGGAGACATGATTTTTCATTCGTCTGCATCAAATCTTG ACTTCAAGGGATACCAACCTTCTGAAAGATTTTTGGGAACGATTCAATAAATATTGTGGCAATG CTAGTCGCCTTCAAGTCAGGAAG Transcript length: 156 Transcript exons: 16174152-16174223,16177199-16177282 ATTCAAGTTGATATTGGTAATTCTAAAGGAGACATGATTTTTCATTCGTCTGCATCAAATCTTG ACTTCAAGACTGAATGGAAAGGCCTTCTGAAAGATTTTTGGGAACGATTCAATAAATATTGTGG CAATGCTAGTCGCCTTCAAGTCAGGAAG
Genomic sequence	ATTCAAGTTGATATTGGTAATTCTAAAGGAGACATGATTTTTCATTCGTCTGCATCAAATCTTG ACTTCAAGGGATACCAAGCTGTATATGATGTAAGTTGTACATTTTATGTATCTATGCTTCTTGC ATCCTCTATACATTCAGAACATCCTGTATAGTTCACTTTTCTTTGCCTAAGTTTTTCTATATCC TGCCTCAACCTTTTAGGAAAATCTGTTTAATACTTTAATGTCTTCTAAATGCGACCGTCCACTT TCTTCTGTGCTTCTGTTAAGAAAATGTGTTACCTTTGGAGATTGGATGATCAAAATTGAGGACT ATATTAATCTGTGCCTAACATTTACTTTAGCTTGCTTAACTCAGTAATGGGAAAATATGTTGCC CTTTTAGGACACGGAAGCAAGTCCTTCCAGTAACAATTCTGAGGATGATGCTGTTCATCAGGAT AACTTTGAGGCCTTGTCCAAATTAAAGGTCAGCAGCTGTTAAATTACCTCAACGGTCCACTTCC TATGACTTTTTTGAAGCTAATGCTTATTGCTGCCTGTCATTGAACTATATCAGCATGTTATTGA CTTATTGTTGCATTTCTTTTTCTCAGGTGAAGGACTTGATGTCTCCAGTTAACGTTCATCTTGC ACAGAACTTTACTAAACCTCCATCACGTTATTCCGAGAGTGCATTGGTTAGTACTAATACCTAT ATGTTACTCTTTTATTTGTTCATTCTGAGCCATGCCTGCGATAGAAAAATGTTCCTTTTATTGG GCTTTCTCTGTAATTTAAGAATGTAAGGTTTCTTCCTTGGTACCTGCAGATTAAAAGACTAGAA GAACTTGGAATCGGAGGGCCATCCACATACTCTTCTATAATGAAAGTATTGCAGGTGCCATATT CCTATGACCCACTCTCTTAGATCATGATATGCCCAAAATATAACCCATTGCCTTTTTTCATTTT CATATATATGCTGATTTTTGGGTTGGATGTTATGAACAAACTATGTAGCTTACAGCATGTTTGT GCTGGGTTGCTTTGCTTATGTTCCTGTGGTGCTGCATATGCCATGTGGTGCAACACAGGTCATA TGGTAACTGTTGGACTTCAATTTACTTGCATCACCTTGGACCTTTCGAATCCAATGGAAGTTGA GTTGTATGTGGTTTGCAACGTGGAGCACTGGGGTCAGCACATACGTGGTCAGCTTGGCATTAAG CTGTGATCTGGCTTTAGAGTTCTTTGTAACATAATCTAAATCTGGAAACCAGGAGATACTGTAT CTATGATGTTTGCCTGCCATTGGATGCAAGTCCATCTACAAATATATGACATAAATAAGGAAAG GTTCATAAAACATATCAGCCGCAAGACCCCAACTTGGATAGGCTGAGATTGATTAGGATCATCC CTGGGCAAAGTAGTACAACATACAATTTCTTTTTCAAATGTACATCCAGAGATGTTTGTTTTTG TTGGGGTCAACCACAATGTTACATGGACAAAACAAACAGTTGCAAAATAGTTGGAACTTGCATC ATCATTAAATTAACAATGACTCAAGCCACATGGATAACAGTGTTTACCTCTTGCTATTCAGGAT CGTAACCATGTGACAGTAAAAGGTCAAGTTGTGCACCCCGAATTCCGTGGTCGGATGGTAGGTT GTTTGCTCCTTATGTCATTTCCTTTTAGAAAGGTCTTATTTGGCAATAACATCTACAATCCTGA TCACACATTGAATTTCTGTTATATTGATTTAAATAAAAGATGATACCTCTAGCTATATGTATTA CTTGATCATATAATCCAATTGTGCCAAAGCATAAACCTTGTAAGGAAAATTACAGGTTAACTAT AGTCCCTAAAGTCTTCAAGGCACCTAAACTATTTTTTATATGTGTATATACGATTCTTTCACTT CTCGCATCAATGTTGCTTATGGTAACTTTAATTAATTAAGTTGTTTTATTTCTTCTATTTTTGA CATATGTTAACTGCCATCTCTTCCTTAGGTCTCAGCATTTCTTACACATCACTTCTCAGAAGTT GCAGATCTCAGCTTTACTGCTAACTTGGAGACTGAGGTAGTGAACAATTCTCAGTTTGTAGGTT ATATCTACATCCCCTTTCTTTCTTATTCTTGAGATCAGAAACCAGCATAAGCTGGCTAGTTACT GCCACAGATTTGGTCAATGTGAATCCCAGTAATTTTGCAGTTTGATATCAGTATGAAAGTTTAG TCACACTTGTTTCAGAAGAGAATCTTAAACCCCATGTGCATAGAATAGTTTTTAAAAAATGTTT GTTTCCTTGTCCGTAATTGTTCTTGCATTTGAGACACATTGGTGGTATTTTATAGAAATGTGAA AATGACTAAATACAGAAGTTTTACTTGAGACTGGAGCTTGTTTGGTAAGTTTTTGCCTGAACTT GAGACTGGAGCAGGGCTGTCCTGGAAAAGCGCTTTACACCAAATAACTGGACAATACATTTATT GTGTAAACCCCTCTACTTTGTGATGTTGTTCATATGCTAATGTGCACCCCTTGTCAATTCTTTT TAACAAACAATGTTGTTACTACCAGGATGTCATTTTCTGATATGCCCATTTCTCTTGCACTTTC TGTTTGAGCAACATCAAGCAGTGTATCTGACTTGTGTTAAAAATAGAATTGTTGGCATATTGAT AAAAATACACAAAGAAAGAAAAGGTTGATGAATATATGAACATCTTGAATGAGATATGCTAGTA TATATGATGTCAATGAAAGTATTCTTGAAAATATTCTTATCACTCTACGTCCACTGACATGGGC TGGTATATGTGAAACCATAAAAACTTGGAGATAGATCTAAAAAATCTGATTAAATTTTGAAATT TTTCTCCAAGTTTTTCCCATCATGATAACTTAACCAGCAATTGTTATATTCTTATGAACAGCTA GCCCGCTTCACTAGTCCTAATATGATAATTCTGAAGTTGGTATAAACATACTAATATCCCTTTC CTACTGCTTTATTAGCTTGATAACGTCTCTGCTGGATCAACTGAATGGAAAGGCCTTCTGAAAG ATTTTTGGGAACGATTCAATAAATATTGTGGCAATGCTAGTCGCCTTCAAGTCAGGAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_003918* osi_circ_011702 						
					
						PMCS
						0.366094919

Conservation Information
Conserved circRNAs	osi_circ_003918* osi_circ_011702
PMCS	0.366094919

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Lu et al., 2015;Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os02g0474300_circ_g.1

Address

Any questions?

Supported by