Detail information of Zm00001d014132_circ_g.2


General Information
CircRNA Name Zm00001d014132_circ_g.2
ID in PlantcircBase zma_circ_001939
Alias circ2086
Organism Zea mays
Position chr5: 33584362-33584825  JBrowse»
Reference genome AGPv4.38
Type   e-circRNA
Identification method CIRCexplor2
Parent gene Zm00001d014132
Parent gene annotation Transcription factor-like protein DPB
Parent gene strand +
Alternative splicing Zm00001d014132_circ_g.3
Support reads 33
Tissues seedling leaves
Exon boundary   No-No
Splicing signals   GT-CA
Number of exons covered Zm00001d014132_T001:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCATTTCATTAATTTTACGCATATGTTGCAGACAGAGGTCAATGGACTGAAAGGTCGGATTGAC
AAGAAAAATGCATATCTGCAGGATTTACAAGATCAAggtggcagacgaactggttgctgagttt
tcagatcccaatattaatattgactctccagatcctgataattcgtctgcggtaagaaatacta
gtatctac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTGGCAGACGAACTGGTTGCTGAGTTTTCAGATCCCAATATTAATATTGACTCTCCAGATCCT
GATAATTCGTCTGCGGTAAGAAATACTAGTATCTACTACGACTCTTGTTCAGTGATTTATCAAG
TAGTTAAATGCCATTCTGATTGTGTTAAAAATGCAGCAACAATATGATGAGAAAAATATCCGAA
GAAGAGTTTATGATGCGCTGAATGTCCTAATGGCTATGGAAATTATATCTAAAGATAAAAAGGA
AATACAGTGGAGAGGTCTGCCCAAGACAAGTATGAATGATATTGAAGAACTGAAGGTTCTGCTC
CTGGTATCTGATAATGGATTTGCTGACAGTTTGACCCTGTCTGCTCATTTCATTAATTTTACGC
ATATGTTGCAGACAGAGGTCAATGGACTGAAAGGTCGGATTGACAAGAAAAATGCATATCTGCA
GGATTTACAAGATCAA
Conservation Information
Conserved circRNAs NA
PMCS 0.04310379
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b