Detail information of Os07g0122400_circ_g.3


General Information
CircRNA Name Os07g0122400_circ_g.3
ID in PlantcircBase osa_circ_032656
Alias NA
Organism Oryza sativa
Position chr7: 1169111-1169171  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRI
Parent gene Os07g0122400
Parent gene annotation Tetratricopeptide region domain containing protein. (Os07t012240
0-01)
Parent gene strand +
Alternative splicing Os07g0122400_circ_g.1 Os07g0122400_circ_g.2 Os07g0122400_circ_g.4
Support reads 2
Tissues seed
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os07t0122400-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAACTCTGTCTACGGCAGCTACAACCGGAAatggctggatcaagcaacggctttgattcgt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATGGCTGGATCAAGCAACGGCTTTGATTCGTCAACTCTGTCTACGGCAGCTACAACCGGAA
Conservation Information
Conserved circRNAs NA
PMCS 0.083333333
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017