Plant Circular RNA Database

Detail information of Csa1G569160_circ_g.1

			
						 General Information
					
						CircRNA Name
						Csa1G569160_circ_g.1
					
						ID in PlantcircBase
						csa_circ_000472
					
						Alias
						Chr1:20823160_20827577
					
						Organism
						
							Cucumis sativus						
					
						Position
						
							chrChr1: 20823160-20827577  JBrowse»						
					
						Reference genome
						
							Cucumis sativus v1.5						
					
						Type  
						
							ei-circRNA							
									
						Identification method
						Find_circ
					
						Parent gene
						
							Csa1G569160						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						-
					
						Alternative splicing
						
							NA						
					
						Support reads
						NA
					
						Tissues
						leaf
					
						Exon boundary  
						
							No-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Csa1G569160.1:2

General Information
CircRNA Name	Csa1G569160_circ_g.1
ID in PlantcircBase	csa_circ_000472
Alias	Chr1:20823160_20827577
Organism	Cucumis sativus
Position	chrChr1: 20823160-20827577 JBrowse»
Reference genome	Cucumis sativus v1.5
Type	ei-circRNA
Identification method	Find_circ
Parent gene	Csa1G569160
Parent gene annotation	NA
Parent gene strand	-
Alternative splicing	NA
Support reads	NA
Tissues	leaf
Exon boundary	No-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Csa1G569160.1:2

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CACAAAAATTACGATGTTTGTATTGTGATACTATAACACTGACCTTAATGTTTGTGGAAGAAGT
TTGATTGTATGCAATCTCATTTAATTCCTTGCTTACctttttcaaagcttgagagcccatttcg
tgatatctcctcaagaaatctcccacatttgttatgccttgatcttccgataagattctgtgat
atacacct

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTTTTTCAAAGCTTGAGAGCCCATTTCGTGATATCTCCTCAAGAAATCTCCCACATTTGTTATG
CCTTGATCTTCCGATAAGATTCTGTGATATACACCTCTTTTGCTGATCCCAACTAGCCACCATA
CTTCACTTTCCTTAGTTGGGGGGTTATGCTTTTTCAACCCTAAATAATTATATATGTATTAGAA
AAATTATTCTATAATAATATATTTTCTTTTTAGGGAAGAAACTGAAAGATAAAAAGCATGAATA
GATGTATAGGACATACCCATTCTTAACATTCTCATCGTATTTCAAGGCTATGTCTAAAAAGTTG
ATGAGAATACAAGCAAAAACCTAAGAAGATAGCTAGAGAAAAGCTCCCCAATTAAGGGCATGCA
ATAGTTGGCAGTGACGGATCCAGAAAGTTTATTGGCAGGAGTTTTATAGTTTAGTAAAATATAT
ATATAGTACCTCTCACGACTATTATTAGTTTTCTTCAAAGGAGATGATGATCCCGTCGATTTCT
TTTAAAAAATATTTCAACTATTTTAGAAATGGATATTGGCCGACGGGTCAGTAAGAGCACCCAA
ACATCCCTACTAGGTGGACACCCTCTTAGGGCTCTCATCATCCCCACATATATATTCAATAAGC
GTCAGGGAAAATAGTCAATACAATTACAATAATACTAGAGATAAGACAAATATGTAAAAGCTCA
CAACATTAGCAAAAAACATTGATATTTAATGCAATAATATTTGAAGCAGAATGATTTTTGAAGA
GCTTATATTTGGTGGACCATAAGGCAGTGAGTTTGTAGATGTTCTCTCATATGTTGATTGACGA
AGTACAACTATTGTTGAATAGTCTGTTGTTTCTTTTCAGCCAAGTTGTCCAGGTGATGGCTATC
AAGAGGTTAGAAAAGAATCAAGCCCTTTTGTGACTTTATACTTATAAAGCAGATGTGGTTGCAT
AAAGCTTTGAAGCTGTCAACATTGTGCTCCCAACCAGTGGTATCCTTTGTTTTGTTCCATAAGG
ATTTGATGAAAATAACAATGGAGGAATATGTTGTCTCATTGTATTCTTACATAGTACACACCAA
TTTGAGTTGAGAACAATCGTTTTTGAGTCTATATATATTGAATAGCCTCAATTGTGAAGATTCC
TTTGTGAGTAGCGTCCAGAGGAAAATTTTCCATTCTTTTTTGGAGGAATTTTTTATGTCCACAG
ATTCTTGAAGAGGAAGGAATCTTTTGAGACAAAGGAAGGTACGAAAGTGGCATGGATGGTAGAT
TTAACAGAGAAGGAACATCGCTATTTGGCTTCCAAATAGGGCAATTTGTTTGATTATTATTAAG
GAGGGAAGGAAGGTTAGTTTGTATATTTCTCCACGGTTAAGCTTCTCTATCTCTCAAAGGTCTT
TTGTCGTGTATATCACATTATTTGCGATCAAAATTTCACGTCTCTTAGGGAGCCATTTTATTCT
GAGGATGTAGCATATAATCTTGGATAAGATCTATACTAAGAATTAAACCAGTCAACACCTTTCC
AAATGAATCTCCAAGGAGCATTGAGGCTACTATGCTTAGTGAAAGTAGGTAATATTTCTAGAGC
AGATGTTGAATATTTAGCATCAATGAAAGATTTCTAGAGGGTAGGTAATATTTAGGGAAAGTAG
GTAATATTTTCAATTAAATCTACACTAACATAACATTGTAATTGAGAATAAATCAAGAAGATAT
TAACATATAACAAAAATATAACCATTATAAAATAAATGAACTAATACAAAAAAAAAAGAAGAAG
GCAAGAAGAAGTTTAAAACAAAAAATAATAATGTTAAAACGGATGCACACAAATAAAATAACAA
ACTTAAGAAGAAAAAAAACACAAACAAATAATAAAAACTTACCTCATAAGCTTCGAGAAAATGA
TGAAGAAGAAGCAAAAAATTGAAAAGAAAAATGTTGAAGTTTTATAAAAATAAAAAAATAATAA
AATAATAAAATGAAGGAAGTTAAATTTTAATTTAGATGGAAAAAAGTGTATAATTATTATTTAT
TTGGTGAAATGGAAGAGTTGTAATTTGGGTTAGACTAAGCACTAACCTAATTACAAATATTAAA
AATTAAATATTTCTTAAACATGTTTTTAAAAATAGTAAAATAAATTAAAATATTTACAAACTAT
AGCAAAATTTTAGATTTGTTTTTTTATATACAAAGAATATAATATTTTTTATATATATTATATA
AAAACGATAAAGTTGAGGATCCGGATCCATGCGCTTAGTCTTAACTGTAAAAGGTAATAACCAT
ACCTTTCATTCGTTTAGTCTTAACTGTAAAAGGTTCAGAAATGGCATCTTCAATGGTGGCACCA
GTCTTCATTAAAATCTGTTCATCCACAACTTTGACTACTAAAAAAAACTTCTTAGATATCCAAT
ACGAATGGGGATTGACAATAAGATCTTTGACATAGCCAATTCCATTTTCTAGGCGATGTTGTTG
GAGAACATTGAAAGACATCAACTCAATTAGTTTATCGGCTGAAACAAGAGTTGGAAGTGTTTTA
GAATCATTTTGTTGTTGGAAGAGGAAGAACTGGACCGGAGCAGACAATAATAAACCGGTAGGGA
TGATAGTGTTGTGGTAGGCATCACAAATTTCAAATTTCAATGGCTCCTCATCTATAGCCTTTAT
CTTATCCTTGTGGTACATGACGTTGGCAATTTTATTGCAGAAACGTAATCTGAGTTTCCATGTT
CCACTTCCAGGTCCTCCCTCATGTTGATTGCTATTTATATATTGTTAAATCATAAACAGGAAAA
AACCAGCACAAGATGTTATGCGAAAACATATAAATAATGAAAAACACATTACTTGAAGAGCTAA
AGTCCAAATTAATGAAATTTTATTTATGTTGAGTTGATGTTGGGTGTACTTTTATTTGAAATTA
ATTAGGTATATTGAATTAAGATGGTGGGTTTGGTGTGCATATTTATATTTGGTTGTGAAAAGAA
AAGATAGTTGTTGGAAAATATTTAATAATAAGGGAAGGGTTGATCTGATGGAAGAGATAAAATT
AAATGAAGAGAGAGTTGATTAAAGTATATATTAATATATATATATATTTTTTAGCAAGTAGGGT
TTAAAGTTGTGCTAACTAAAAGAAATGGAAAAACCCTAGCCGCCACCACCTCAGCCCACCTCCG
GCTACGCCAATGCCGAGCTGCATGAGCCTTCTTTCCCCTTCTACGTTCATTTGCAAGCCGTCTC
CCCTAGTCGCGAGCAAGGAGCCCGTTTATGGGTTTTTGGTTACCCATTTAGTAGACATTTTTAA
GATTGGATTATTTTTTTGGTTTCTTAGATTTTTCTTTGAAGATGCAATTGGAGCTCTTTGAATT
GGTTTCTTGATTTTCCATTAACTTTGGAATGAAATTTAGTTAATCCCCGTTTGGATAAGTTGGC
AAAGGCAAGGTTAATTAAATTGATAAATTTATGCCTTAGATTGTTTGTACGGATGGTAGTTGTT
AGCTTTAGCTATTAGGACTAATATATATATATCCTCACCACCTTTAGACTAATATTGACTATTG
ATTGACGGTGAATGGGTTCACTTACACTTTATGATTTGATGTGTGTTCCTACCGAATCACTAGA
CTTATATGACTCGGGATATCTTCTAATAAGAAGTTAAGAGTTTACTAGACCAGTAATTGGATCC
TAGATATTTATATACCCACCCATAATCCATGAACATGTCATATGAGGGCTCTATATATGTTCAT
GTTTTCGCTATTTTCACTATTTTCTTTAAAATTAAATAGGGTATTAATTAAGCTTATTTTCTCG
GTAGTTTTTTTTTTTTTTTTTTNNNTTTTTTTTTCGGTTGTTTTTTTTTTTTTTTTTTTTGTTG
GTTTGCCAAACTTTTGTTTTTAGATGGTTTGTATTACATTTTATTTAATAAAATAAGTAGAATT
TTCTTTGTTTTTAAAGTTTAAAAATGTTATTTATTTAAGTAATAGGGAACCTCAAACTCCGAAA
AGTTGGGTCTTTACTTTTTGTCATGATCGTCAAAAAAACAAACAAAAATTGTGCATAAAAAAAT
GTCTAACCTCGCAGTGATATTGAATTAGAGATGAAAGAGGTATAGTAAGGATGTTTAAGAAAAA
GGAAGTAATTGATTTCTAACATAATATGTACCTAAAAGCGGGAATGATGAATGTGCTAAGGGGG
TGTCCACCTAGTAGAGATGTTCGGGTGCACCTACTGACTAATTGTATCTTTTTTTAAAAAAAAA
CATAACATATACCTAAAAGCAATAAAATTACACAAAAATTACGATGTTTGTATTGTGATACTAT
AACACTGACCTTAATGTTTGTGGAAGAAGTTTGATTGTATGCAATCTCATTTAATTCCTTGCTT
AC
						
					

			
		

Sequences
Splice junction sequence	CACAAAAATTACGATGTTTGTATTGTGATACTATAACACTGACCTTAATGTTTGTGGAAGAAGT TTGATTGTATGCAATCTCATTTAATTCCTTGCTTACctttttcaaagcttgagagcccatttcg tgatatctcctcaagaaatctcccacatttgttatgccttgatcttccgataagattctgtgat atacacct
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTTTTTCAAAGCTTGAGAGCCCATTTCGTGATATCTCCTCAAGAAATCTCCCACATTTGTTATG CCTTGATCTTCCGATAAGATTCTGTGATATACACCTCTTTTGCTGATCCCAACTAGCCACCATA CTTCACTTTCCTTAGTTGGGGGGTTATGCTTTTTCAACCCTAAATAATTATATATGTATTAGAA AAATTATTCTATAATAATATATTTTCTTTTTAGGGAAGAAACTGAAAGATAAAAAGCATGAATA GATGTATAGGACATACCCATTCTTAACATTCTCATCGTATTTCAAGGCTATGTCTAAAAAGTTG ATGAGAATACAAGCAAAAACCTAAGAAGATAGCTAGAGAAAAGCTCCCCAATTAAGGGCATGCA ATAGTTGGCAGTGACGGATCCAGAAAGTTTATTGGCAGGAGTTTTATAGTTTAGTAAAATATAT ATATAGTACCTCTCACGACTATTATTAGTTTTCTTCAAAGGAGATGATGATCCCGTCGATTTCT TTTAAAAAATATTTCAACTATTTTAGAAATGGATATTGGCCGACGGGTCAGTAAGAGCACCCAA ACATCCCTACTAGGTGGACACCCTCTTAGGGCTCTCATCATCCCCACATATATATTCAATAAGC GTCAGGGAAAATAGTCAATACAATTACAATAATACTAGAGATAAGACAAATATGTAAAAGCTCA CAACATTAGCAAAAAACATTGATATTTAATGCAATAATATTTGAAGCAGAATGATTTTTGAAGA GCTTATATTTGGTGGACCATAAGGCAGTGAGTTTGTAGATGTTCTCTCATATGTTGATTGACGA AGTACAACTATTGTTGAATAGTCTGTTGTTTCTTTTCAGCCAAGTTGTCCAGGTGATGGCTATC AAGAGGTTAGAAAAGAATCAAGCCCTTTTGTGACTTTATACTTATAAAGCAGATGTGGTTGCAT AAAGCTTTGAAGCTGTCAACATTGTGCTCCCAACCAGTGGTATCCTTTGTTTTGTTCCATAAGG ATTTGATGAAAATAACAATGGAGGAATATGTTGTCTCATTGTATTCTTACATAGTACACACCAA TTTGAGTTGAGAACAATCGTTTTTGAGTCTATATATATTGAATAGCCTCAATTGTGAAGATTCC TTTGTGAGTAGCGTCCAGAGGAAAATTTTCCATTCTTTTTTGGAGGAATTTTTTATGTCCACAG ATTCTTGAAGAGGAAGGAATCTTTTGAGACAAAGGAAGGTACGAAAGTGGCATGGATGGTAGAT TTAACAGAGAAGGAACATCGCTATTTGGCTTCCAAATAGGGCAATTTGTTTGATTATTATTAAG GAGGGAAGGAAGGTTAGTTTGTATATTTCTCCACGGTTAAGCTTCTCTATCTCTCAAAGGTCTT TTGTCGTGTATATCACATTATTTGCGATCAAAATTTCACGTCTCTTAGGGAGCCATTTTATTCT GAGGATGTAGCATATAATCTTGGATAAGATCTATACTAAGAATTAAACCAGTCAACACCTTTCC AAATGAATCTCCAAGGAGCATTGAGGCTACTATGCTTAGTGAAAGTAGGTAATATTTCTAGAGC AGATGTTGAATATTTAGCATCAATGAAAGATTTCTAGAGGGTAGGTAATATTTAGGGAAAGTAG GTAATATTTTCAATTAAATCTACACTAACATAACATTGTAATTGAGAATAAATCAAGAAGATAT TAACATATAACAAAAATATAACCATTATAAAATAAATGAACTAATACAAAAAAAAAAGAAGAAG GCAAGAAGAAGTTTAAAACAAAAAATAATAATGTTAAAACGGATGCACACAAATAAAATAACAA ACTTAAGAAGAAAAAAAACACAAACAAATAATAAAAACTTACCTCATAAGCTTCGAGAAAATGA TGAAGAAGAAGCAAAAAATTGAAAAGAAAAATGTTGAAGTTTTATAAAAATAAAAAAATAATAA AATAATAAAATGAAGGAAGTTAAATTTTAATTTAGATGGAAAAAAGTGTATAATTATTATTTAT TTGGTGAAATGGAAGAGTTGTAATTTGGGTTAGACTAAGCACTAACCTAATTACAAATATTAAA AATTAAATATTTCTTAAACATGTTTTTAAAAATAGTAAAATAAATTAAAATATTTACAAACTAT AGCAAAATTTTAGATTTGTTTTTTTATATACAAAGAATATAATATTTTTTATATATATTATATA AAAACGATAAAGTTGAGGATCCGGATCCATGCGCTTAGTCTTAACTGTAAAAGGTAATAACCAT ACCTTTCATTCGTTTAGTCTTAACTGTAAAAGGTTCAGAAATGGCATCTTCAATGGTGGCACCA GTCTTCATTAAAATCTGTTCATCCACAACTTTGACTACTAAAAAAAACTTCTTAGATATCCAAT ACGAATGGGGATTGACAATAAGATCTTTGACATAGCCAATTCCATTTTCTAGGCGATGTTGTTG GAGAACATTGAAAGACATCAACTCAATTAGTTTATCGGCTGAAACAAGAGTTGGAAGTGTTTTA GAATCATTTTGTTGTTGGAAGAGGAAGAACTGGACCGGAGCAGACAATAATAAACCGGTAGGGA TGATAGTGTTGTGGTAGGCATCACAAATTTCAAATTTCAATGGCTCCTCATCTATAGCCTTTAT CTTATCCTTGTGGTACATGACGTTGGCAATTTTATTGCAGAAACGTAATCTGAGTTTCCATGTT CCACTTCCAGGTCCTCCCTCATGTTGATTGCTATTTATATATTGTTAAATCATAAACAGGAAAA AACCAGCACAAGATGTTATGCGAAAACATATAAATAATGAAAAACACATTACTTGAAGAGCTAA AGTCCAAATTAATGAAATTTTATTTATGTTGAGTTGATGTTGGGTGTACTTTTATTTGAAATTA ATTAGGTATATTGAATTAAGATGGTGGGTTTGGTGTGCATATTTATATTTGGTTGTGAAAAGAA AAGATAGTTGTTGGAAAATATTTAATAATAAGGGAAGGGTTGATCTGATGGAAGAGATAAAATT AAATGAAGAGAGAGTTGATTAAAGTATATATTAATATATATATATATTTTTTAGCAAGTAGGGT TTAAAGTTGTGCTAACTAAAAGAAATGGAAAAACCCTAGCCGCCACCACCTCAGCCCACCTCCG GCTACGCCAATGCCGAGCTGCATGAGCCTTCTTTCCCCTTCTACGTTCATTTGCAAGCCGTCTC CCCTAGTCGCGAGCAAGGAGCCCGTTTATGGGTTTTTGGTTACCCATTTAGTAGACATTTTTAA GATTGGATTATTTTTTTGGTTTCTTAGATTTTTCTTTGAAGATGCAATTGGAGCTCTTTGAATT GGTTTCTTGATTTTCCATTAACTTTGGAATGAAATTTAGTTAATCCCCGTTTGGATAAGTTGGC AAAGGCAAGGTTAATTAAATTGATAAATTTATGCCTTAGATTGTTTGTACGGATGGTAGTTGTT AGCTTTAGCTATTAGGACTAATATATATATATCCTCACCACCTTTAGACTAATATTGACTATTG ATTGACGGTGAATGGGTTCACTTACACTTTATGATTTGATGTGTGTTCCTACCGAATCACTAGA CTTATATGACTCGGGATATCTTCTAATAAGAAGTTAAGAGTTTACTAGACCAGTAATTGGATCC TAGATATTTATATACCCACCCATAATCCATGAACATGTCATATGAGGGCTCTATATATGTTCAT GTTTTCGCTATTTTCACTATTTTCTTTAAAATTAAATAGGGTATTAATTAAGCTTATTTTCTCG GTAGTTTTTTTTTTTTTTTTTTNNNTTTTTTTTTCGGTTGTTTTTTTTTTTTTTTTTTTTGTTG GTTTGCCAAACTTTTGTTTTTAGATGGTTTGTATTACATTTTATTTAATAAAATAAGTAGAATT TTCTTTGTTTTTAAAGTTTAAAAATGTTATTTATTTAAGTAATAGGGAACCTCAAACTCCGAAA AGTTGGGTCTTTACTTTTTGTCATGATCGTCAAAAAAACAAACAAAAATTGTGCATAAAAAAAT GTCTAACCTCGCAGTGATATTGAATTAGAGATGAAAGAGGTATAGTAAGGATGTTTAAGAAAAA GGAAGTAATTGATTTCTAACATAATATGTACCTAAAAGCGGGAATGATGAATGTGCTAAGGGGG TGTCCACCTAGTAGAGATGTTCGGGTGCACCTACTGACTAATTGTATCTTTTTTTAAAAAAAAA CATAACATATACCTAAAAGCAATAAAATTACACAAAAATTACGATGTTTGTATTGTGATACTAT AACACTGACCTTAATGTTTGTGGAAGAAGTTTGATTGTATGCAATCTCATTTAATTCCTTGCTT AC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.093545009

Conservation Information
Conserved circRNAs	NA
PMCS	0.093545009

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						He et al., 2020

circRNA

Detail information of Csa1G569160_circ_g.1

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