Plant Circular RNA Database

Detail information of Os02g0498300_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os02g0498300_circ_g.1
					
						ID in PlantcircBase
						osa_circ_014719
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 17534919-17537338  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os02g0498300						
					
						Parent gene annotation
						
							Similar to non-imprinted in Prader-Willi/Angelman syndrome regio
n protein 1. (Os02t0498300-01)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os02g0498300_circ_g.2 						
					
						Support reads
						1
					
						Tissues
						shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os02t0498300-01:6

General Information
CircRNA Name	Os02g0498300_circ_g.1
ID in PlantcircBase	osa_circ_014719
Alias	NA
Organism	Oryza sativa
Position	chr2: 17534919-17537338 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os02g0498300
Parent gene annotation	Similar to non-imprinted in Prader-Willi/Angelman syndrome regio n protein 1. (Os02t0498300-01)
Parent gene strand	+
Alternative splicing	Os02g0498300_circ_g.2
Support reads	1
Tissues	shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os02t0498300-01:6

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GTCATTTGGTGGATCAAATCAGTTCATCTACATCCAAACATGGTTCTTCATAGTAGTTGTTATA
GTTTGTTGTTTGGTGCAGTTGAACTACTTAAATAAGgtataggttcataggttctcattccaga
aggcatggtaacatctatagacaatgtgagagggttgaccctggccatatcatcaagtgcattt
atcggatc

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 724
Transcript exons: 17534919-17535067,17535239-17535295,17536196-17536286,17
536367-17536527,17536982-17537109,17537201-17537338
GTATAGGTTCATAGGTTCTCATTCCAGAAGGCATGGTAACATCTATAGACAATGTGAGAGGGTT
GACCCTGGCCATATCATCAAGTGCATTTATCGGATCAAGCTTTATTATCAAGAAAATTGGGCTC
AAGAAGGCTGGGGATTCTGGGGTTCTGGAGGTTTCTCATACTTGTATGAGCCATTATGGTGGTT
GGGGATGATAACTATGATTCTGGGCGAGGTAGCAAACTTTGCAGCATATGCATTTGCTCCCGCT
GTACTTGTTACTCCTCTAGGAGCTCTTAGCATTATATTTAGTGCAGTGCTCGCACACTTCGTCT
TGAAAGAAAAACTCCATATGTTTGGTGTTGTTGGCTGTATCTTGTGTGTTGTTGGCTCTGTTGG
TATAGTTTTGCATGCCCCAAAGGAGAGAGAGATTGATTCAATAGATGAAATATGGCATCTTGCT
ACTGAGCCAGGTTTTATTGTTTATTCATGTGTGGCTGTGGTGTCTGTTCTATTTTTGATTTTCT
GGGTTGCTGAACGTTCTGGACACAGGAAGATGCTTGTTTATATTGCAATCTGTTCAACAATGGG
ATCTCTCACGGTTATCAGTGTAAAGGCAGTTGCCATTGCCTTGAAGCTGTCATTTGGTGGATCA
AATCAGTTCATCTACATCCAAACATGGTTCTTCATAGTAGTTGTTATAGTTTGTTGTTTGGTGC
AGTTGAACTACTTAAATAAG
						
					

						Genomic sequence
						
							GTATAGGTTCATAGGTTCTCATTCCAGAAGGCATGGTAACATCTATAGACAATGTGAGAGGGTT
GACCCTGGCCATATCATCAAGTGCATTTATCGGATCAAGCTTTATTATCAAGAAAATTGGGCTC
AAGAAGGCTGGGGATTCTGGGGTAAGAGCAGGTTGTACATCTTCCAGCAACTATATAAACTGAA
TGAACTTTTGACATTGCAAACAAATGCTTTTTATATGTAGAATTGCATAATGTTTTCAAGTGCA
GTTTTGAATTCTTTCAGCCTTTTATGTAGTATTACTTGTTCATATTTTTTAATATGCACTGTAG
GTTCTGGAGGTTTCTCATACTTGTATGAGCCATTATGGTGGTTGGGGATGATAACTAGTAAGTG
TGTATTAGAACCATGCCTTTTGAAGTATTCTAGTCATATGTTTTTTAAAAAATCAAGTATTCTG
CATTGTGGATTTGCTGCTCACTACTGACTGAATTGTGTCACACACCTTGAGTAATAAGTCCTAG
TTGAATATAGGTACTGGTTCACTTTTTTGTTGTTTACTTCAACCATAAAAAATAGAAGAAAAAA
ATGGTGGATGATGGGTTAGTGTGAAGCATAATCACTGAATGCTATAATTATAGCATTAAGTTTT
GTGTAGATCCACCACCAGTACAGTAATCCTAGGGCCAATCCACATGATTTACATCACTTCAATT
AAATTATCATATGATTCAGGATTTCAGGAATCCGGAGTAGGTACTTTTGCAAAGTTTGAGAAAA
AGCAAATCTTGGATCAGCTTAATTCTGAACACTTGATACTCAGATTAGGACCTTTGTTTTAAAA
AAAACATGGATGGTTTTCAACTTAGCAATTTATCTGCAGAATATAATCGCTAAAAAGTACTTCT
CCGTTTCATAATGTAAGTCATTCTAGCATTTTCTACATTCATATTGATGTTAATAAATCTAGAT
AGATATATATGTCTAGATTCATTAACATCAATATGAATGTGGAAAATGCTAGAATGACTTACAT
TGTGAAACGGAGGGAGTAGTGCTTATGAGCATCATGCCCTGCAATTCAATATCACTGCTGCGAT
CTATCCTATTATTATAATTATTATTTACATTTCCCTTTCTGATTATTTCACTTTCAAAAAGGGT
AGCCATCTCATTAATACAGAGTTCAAATCAACATACTGGATACTGATACTTAGATGTGAACCAA
TATTTGTGATATGAACCGGAAGCTCAAACGTTATTCCTAATCATCTTGTTTTACCTTGCAGTGA
TTCTGGGCGAGGTAGCAAACTTTGCAGCATATGCATTTGCTCCCGCTGTACTTGTTACTCCTCT
AGGAGCTCTTAGCATTATATTTAGGTAGTATCCATACCACATTCTATAATTTACTCATGCATCA
AAGTATGTTTTTTGTTTTCTTTACTATTTTGTTCATGCAGTGCAGTGCTCGCACACTTCGTCTT
GAAAGAAAAACTCCATATGTTTGGTGTTGTTGGCTGTATCTTGTGTGTTGTTGGCTCTGTTGGT
ATAGTTTTGCATGCCCCAAAGGAGAGAGAGATTGATTCAATAGATGAAATATGGCATCTTGCTA
CTGAGCCAGGTAAACTACTTGAATACTTCTGTCAATAAAGAACCAACAGGATCCATTTTTATCT
TTTCGTATTAATATAATATGTATACCGTAGGATACTTTTGTACTGCTAACATTTTAAAAAACAC
TAGTATTTTCATGTGTTACTACATAATCTTTTTTTTTTGTGAGGAAGCTTTATTACTAAATCTG
CTAATTGTAGGACGATGTATCCAATGTGGATGTTTAATTTTTTCCCCTTTTTATGGGGTAAAAC
TGAATGTATTCCCTGACTTGACCAATACTATGGAAAATTGCAAGACTACAACCATCGCAAAATT
TTGCAACTTTGGGTAATATATCCCAATAATAATGATCTTAAAGTTCTCTTGCGAGCATTTACTT
ATTCTCTCACTTGTTCTAAGAATGGAACTTCTTATAGAATGTTAACCACAAGGTTTTGTTATCT
GGATAACTTCTGCAGGTTTTATTGTTTATTCATGTGTGGCTGTGGTGTCTGTTCTATTTTTGAT
TTTCTGGGTTGCTGAACGTTCTGGACACAGGAAGATGCTTGTTTATATTGCAATCTGTTCAACA
ATGGGATCTCTCACGGTATATAAGACATACATCACCTTTGGATTCAGTTAATTGAATGGATGTG
GTTAGTGATTGTGGATTAATACAATTATGGTTTTTGGAACAGGTTATCAGTGTAAAGGCAGTTG
CCATTGCCTTGAAGCTGTCATTTGGTGGATCAAATCAGTTCATCTACATCCAAACATGGTTCTT
CATAGTAGTTGTTATAGTTTGTTGTTTGGTGCAGTTGAACTACTTAAATAAG
						
					

			
		

Sequences
Splice junction sequence	GTCATTTGGTGGATCAAATCAGTTCATCTACATCCAAACATGGTTCTTCATAGTAGTTGTTATA GTTTGTTGTTTGGTGCAGTTGAACTACTTAAATAAGgtataggttcataggttctcattccaga aggcatggtaacatctatagacaatgtgagagggttgaccctggccatatcatcaagtgcattt atcggatc
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 724 Transcript exons: 17534919-17535067,17535239-17535295,17536196-17536286,17 536367-17536527,17536982-17537109,17537201-17537338 GTATAGGTTCATAGGTTCTCATTCCAGAAGGCATGGTAACATCTATAGACAATGTGAGAGGGTT GACCCTGGCCATATCATCAAGTGCATTTATCGGATCAAGCTTTATTATCAAGAAAATTGGGCTC AAGAAGGCTGGGGATTCTGGGGTTCTGGAGGTTTCTCATACTTGTATGAGCCATTATGGTGGTT GGGGATGATAACTATGATTCTGGGCGAGGTAGCAAACTTTGCAGCATATGCATTTGCTCCCGCT GTACTTGTTACTCCTCTAGGAGCTCTTAGCATTATATTTAGTGCAGTGCTCGCACACTTCGTCT TGAAAGAAAAACTCCATATGTTTGGTGTTGTTGGCTGTATCTTGTGTGTTGTTGGCTCTGTTGG TATAGTTTTGCATGCCCCAAAGGAGAGAGAGATTGATTCAATAGATGAAATATGGCATCTTGCT ACTGAGCCAGGTTTTATTGTTTATTCATGTGTGGCTGTGGTGTCTGTTCTATTTTTGATTTTCT GGGTTGCTGAACGTTCTGGACACAGGAAGATGCTTGTTTATATTGCAATCTGTTCAACAATGGG ATCTCTCACGGTTATCAGTGTAAAGGCAGTTGCCATTGCCTTGAAGCTGTCATTTGGTGGATCA AATCAGTTCATCTACATCCAAACATGGTTCTTCATAGTAGTTGTTATAGTTTGTTGTTTGGTGC AGTTGAACTACTTAAATAAG
Genomic sequence	GTATAGGTTCATAGGTTCTCATTCCAGAAGGCATGGTAACATCTATAGACAATGTGAGAGGGTT GACCCTGGCCATATCATCAAGTGCATTTATCGGATCAAGCTTTATTATCAAGAAAATTGGGCTC AAGAAGGCTGGGGATTCTGGGGTAAGAGCAGGTTGTACATCTTCCAGCAACTATATAAACTGAA TGAACTTTTGACATTGCAAACAAATGCTTTTTATATGTAGAATTGCATAATGTTTTCAAGTGCA GTTTTGAATTCTTTCAGCCTTTTATGTAGTATTACTTGTTCATATTTTTTAATATGCACTGTAG GTTCTGGAGGTTTCTCATACTTGTATGAGCCATTATGGTGGTTGGGGATGATAACTAGTAAGTG TGTATTAGAACCATGCCTTTTGAAGTATTCTAGTCATATGTTTTTTAAAAAATCAAGTATTCTG CATTGTGGATTTGCTGCTCACTACTGACTGAATTGTGTCACACACCTTGAGTAATAAGTCCTAG TTGAATATAGGTACTGGTTCACTTTTTTGTTGTTTACTTCAACCATAAAAAATAGAAGAAAAAA ATGGTGGATGATGGGTTAGTGTGAAGCATAATCACTGAATGCTATAATTATAGCATTAAGTTTT GTGTAGATCCACCACCAGTACAGTAATCCTAGGGCCAATCCACATGATTTACATCACTTCAATT AAATTATCATATGATTCAGGATTTCAGGAATCCGGAGTAGGTACTTTTGCAAAGTTTGAGAAAA AGCAAATCTTGGATCAGCTTAATTCTGAACACTTGATACTCAGATTAGGACCTTTGTTTTAAAA AAAACATGGATGGTTTTCAACTTAGCAATTTATCTGCAGAATATAATCGCTAAAAAGTACTTCT CCGTTTCATAATGTAAGTCATTCTAGCATTTTCTACATTCATATTGATGTTAATAAATCTAGAT AGATATATATGTCTAGATTCATTAACATCAATATGAATGTGGAAAATGCTAGAATGACTTACAT TGTGAAACGGAGGGAGTAGTGCTTATGAGCATCATGCCCTGCAATTCAATATCACTGCTGCGAT CTATCCTATTATTATAATTATTATTTACATTTCCCTTTCTGATTATTTCACTTTCAAAAAGGGT AGCCATCTCATTAATACAGAGTTCAAATCAACATACTGGATACTGATACTTAGATGTGAACCAA TATTTGTGATATGAACCGGAAGCTCAAACGTTATTCCTAATCATCTTGTTTTACCTTGCAGTGA TTCTGGGCGAGGTAGCAAACTTTGCAGCATATGCATTTGCTCCCGCTGTACTTGTTACTCCTCT AGGAGCTCTTAGCATTATATTTAGGTAGTATCCATACCACATTCTATAATTTACTCATGCATCA AAGTATGTTTTTTGTTTTCTTTACTATTTTGTTCATGCAGTGCAGTGCTCGCACACTTCGTCTT GAAAGAAAAACTCCATATGTTTGGTGTTGTTGGCTGTATCTTGTGTGTTGTTGGCTCTGTTGGT ATAGTTTTGCATGCCCCAAAGGAGAGAGAGATTGATTCAATAGATGAAATATGGCATCTTGCTA CTGAGCCAGGTAAACTACTTGAATACTTCTGTCAATAAAGAACCAACAGGATCCATTTTTATCT TTTCGTATTAATATAATATGTATACCGTAGGATACTTTTGTACTGCTAACATTTTAAAAAACAC TAGTATTTTCATGTGTTACTACATAATCTTTTTTTTTTGTGAGGAAGCTTTATTACTAAATCTG CTAATTGTAGGACGATGTATCCAATGTGGATGTTTAATTTTTTCCCCTTTTTATGGGGTAAAAC TGAATGTATTCCCTGACTTGACCAATACTATGGAAAATTGCAAGACTACAACCATCGCAAAATT TTGCAACTTTGGGTAATATATCCCAATAATAATGATCTTAAAGTTCTCTTGCGAGCATTTACTT ATTCTCTCACTTGTTCTAAGAATGGAACTTCTTATAGAATGTTAACCACAAGGTTTTGTTATCT GGATAACTTCTGCAGGTTTTATTGTTTATTCATGTGTGGCTGTGGTGTCTGTTCTATTTTTGAT TTTCTGGGTTGCTGAACGTTCTGGACACAGGAAGATGCTTGTTTATATTGCAATCTGTTCAACA ATGGGATCTCTCACGGTATATAAGACATACATCACCTTTGGATTCAGTTAATTGAATGGATGTG GTTAGTGATTGTGGATTAATACAATTATGGTTTTTGGAACAGGTTATCAGTGTAAAGGCAGTTG CCATTGCCTTGAAGCTGTCATTTGGTGGATCAAATCAGTTCATCTACATCCAAACATGGTTCTT CATAGTAGTTGTTATAGTTTGTTGTTTGGTGCAGTTGAACTACTTAAATAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_011764 						
					
						PMCS
						0.229126877

Conservation Information
Conserved circRNAs	osi_circ_011764
PMCS	0.229126877

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							17535287-17534921(+)
17534996-17537300(-)
						
						Potential amino acid sequence
						
							MITMILGEVANFAAYAFAPAVLVTPLGALSIIFSAVLAHFVLKEKLHMFGVVGCILCVVGSVGI
VLHAPKEREIDSIDEIWHLATEPGFIVYSCVAVVSVLFLIFWVAERSGHRKMLVYIAICSTMGS
LTVISVKAVAIALKLSFGGSNQFIYIQTWFFIVVVIVCCLVQLNYLNKV*(+)
MARVNPLTLSIDVTMPSGMRTYEPIPYLSSSTAPNNKL*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	17535287-17534921(+) 17534996-17537300(-)
Potential amino acid sequence	MITMILGEVANFAAYAFAPAVLVTPLGALSIIFSAVLAHFVLKEKLHMFGVVGCILCVVGSVGI VLHAPKEREIDSIDEIWHLATEPGFIVYSCVAVVSVLFLIFWVAERSGHRKMLVYIAICSTMGS LTVISVKAVAIALKLSFGGSNQFIYIQTWFFIVVVIVCCLVQLNYLNKV(+) MARVNPLTLSIDVTMPSGMRTYEPIPYLSSSTAPNNKL(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os02g0498300_circ_g.1

Address

Any questions?

Supported by