Detail information of BGIOSGA015176_circ_g.2


General Information
CircRNA Name BGIOSGA015176_circ_g.2
ID in PlantcircBase osi_circ_014316
Alias Chr04:20190545_20195145(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 17440364-17444963  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA015176
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA015176_circ_g.1 BGIOSGA015176_circ_g.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA015176-TA:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CACCTTAATCCAGAAACTCACCGGGATAATATCTAGAACTGCAAATATTTTAGCTGCATACTTT
GAAGCATAGTAGGTTGAGACATATTGAAGATCTGGAccaacccatcatagcctctataaacatg
gagcgcgatggatccgttgaatgaactatatattgcagcaggtgacctgtgatatgacagaaaa
aatgaatt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCAACCCATCATAGCCTCTATAAACATGGAGCGCGATGGATCCGTTGAATGAACTATATATTGC
AGCAGGTGACCTGTGATATGACAGAAAAAATGAATTCTGAAAGATTTGTTGGGCTTTGTTAAAA
CCAGTGGTTCGTTTTTAGCTGATTAAATTTTGGACTGAGTCCAGCCAGAAATTTGTATGCATTG
CAGACATTTGGCTAAGTGGCTAGGCATTTGACAAAGAATAGGCCAGAAAATCAAAAGTTTACCC
TAAAACATAAGACTATTGATTACTGACAGTCCAATACATTTATGACAAATGACAAATGACAAAT
CTATGTTGTTCAGTGAAACCTGAATATCCTTGCGCAAATGTTGAGCCATGAAGAAATTTCTTTG
CTTGAGCAATTATTTTATTTTATTTATTATTATTATTATTATTATTATTTTGGTGGGGGGGGGG
GGTAGATTCCCTGGCTCCAAAAAATAGTCATAAGTTAATCAAAGAGCTAGTCCATAACCACTTT
CCAGATCCATGGGTGGACAATTCAAGTCTAAGGGTATTTCTATTATTTCCCTCTGCTGAATACA
CCTTGGAGATACCAGGGTGATATGTTGTTAAGCTGCTTATCAATGCAGGGGAGATATGTGAAAA
CGAAGGGAATAGAGGATAAATCAGTAAATTGACATGCGCAACTTATTTTGCACACTGCAATTAC
TAGGAGCTCGCTGCTCTAAGGTGTATTAATCTAAAATATTACCAAAAAAAGTGCCCGGGTTGGA
CATATGATTCGATGGTTTCACCATATTAGTGGATGGTTGCATGCATCCCATAAACTCTAAGACC
TCCTGTTGTAGACAGAAAAGGTAAAGAAGTATGACTAATCTGAATGGTAACGGAAATAGTAAGG
GTAATCGGGGAGATACTCGCATACCCTTTTAGCACATTCTTCTAGCACAGCAGTCAATGTTTCT
TCCCAGATTGAACACCCGTCAATGTGCAGTATGTGCTACAATGATGCATGAAACAAAAATAAAG
ATCAGTTTCAGTAGCTCATGAACTATTAAGGACAAAATGCATGAAACTATATGAATGCACACTA
AAGATTCCCGACACTAATTAGCTCTCAGCTCAATAAGAACCTCATAACTTACTAAACAACCACA
TATCGAATATGGATTGTGAGTCTTTCTTAGTCAAACTAAGCTGTGTTCTATGGCCAACTTTGTG
CTGATAAAGGCAAATATGCATCAATATCTTAACATACTAGAAGAAACCATTAGATATGTGTTAT
TTTCAAGGGAACATGTGTTTTTTAAGCACAAATACTGGTGGAAATGCCCATATTCATTGTCAAC
TAAAAGGAATGGGATACTTGGCAAGGCCCTCTTTATAACAATGTATGTAAAGTTGACCATGCCT
GGTAACTCTTTAGTTACTTGGGTCCTGGCCATAGCCAAACCAAAAACACACCAACTTGTGCAGC
TAGATTCCAAAAAGAATGAACACATATTGATTTCAAAAATCAGCAAATATTGTTACTGACCCAA
TCTATGGCTAACCAGGAGAACATATATCATATTCATATGCACACAAGTTCTCACGTGTACACAC
CGTGCACACCAATTAACAAATGTCACCGTAAAATCTAGAAAAAATAGTACATGTACATTCATTA
GTATTACATCTACGTGTAAAGTCCCACCTTCAAATTCATCCTACATAGAGAGTAACATAAAACA
CAAAATTCTATGGATTTATAGCCTTAAGACTGCCAGATTTTTTTTTTCGTTACAGCTAAAATAT
AATGAATTTGAGGTTAAGATTTTACATGTAGGTGTAATACTATTGAAAGTATATGCACAATATT
TTCTAGATTTTTCAGTGACATTTGTTAGTTGGTATGCACAGAGTGTGCACGCGAAACTTGTGTG
CATAAGATATGTTCCCGCTAACCATGAGCACTGAAAGCCTAAGTCATTGATCACCCTACTTTCA
TCAGGAGGCAAATCATTAGGCTGGTACATACAAAATAAATTCTCACTTATGGGTGTTCATCTGA
CTATTCGGTACATCAGCTCCATTCATAGAAACTTCAAACACGTTCTTTTACACCTTAAATAAGA
AAACTAATGCCAAGTCACCTCTTCTAATTAATTGACTTACATGGTTGTATTAACTGAAGACTGG
TGTATACTAATGGATATTTCTAAAAGCAAAGAAAGAAAAATGTAAGATTCACTAAAAATACCTG
TAGGAATTCCATTCTCTGCATCTGTGAAAGCATATAATTTGACAATGACATGAGATTGCCTTCT
ATATCACCTGCTCAGAAGTGTAAAACACACAGAATCACATATTAATCCAGTTACTCCATTGATT
TTTTTTTTTGAAAAGAAAAACAGCTCCAAATACAAATAGTTCTGAATGTAGTTCTTAAAGGATG
GCATATATAATCATCGTCAGCATAGTTGTTGAGAAAATGTACAGAATCAACAGTTTCTTCTACA
ATTATACCACATCTTTTTTGCAATGAAGTATAAGATTACAAAGTTGTATTTATGATTAACGTAA
AGTTGAATATTTTTTTCACTACAACTCTAGAAGTGTGTGCACCAATGCTAACAACAATACTTAA
ACAAAAAATATAATCACATAGGCCCAGAGAGTAAAATGTTAATTCAGTGTATTTTGATTCCATA
CCATAAATGAGCAATGATAAGGCTTTCAGCTTGCCTTGTAGTTGGCTTACTAACTCCTTTTTTA
TCATTTGCTTAAGCCATCCACCTAAATTCTTCATACAAAATAGGATGTAAAAAAGCATGATTGA
AAGGGAAGAACTATGTCAGAGAGTTGAACCAAATCTACGAGCAAAGATAAGCACACACCAGATC
TATAAGGCCATCAAAGTTCTTTGACATGTTCAAAAGGCCCTGCATTATCATAAGATATCACAAT
ATTTACATGTTACTGAACCAAACAATTACAGAATATATCATTATCGAGTTATATCCCAATTCCC
AAGTTTGATACCTCCAAGCCAATCAAAAAGAAATTCAACCAGATTTGCTTAGATAAAAAAATGT
CTACTGAATACAAAGAGCTATAGCCTTATAGGTAGTCTCTTTACTTAAATTATCCAGCTTCTTA
GATTGTTCTTCTTTGGTTAGGCTAGTAAAAGATTATATGGTGGCAAATAATGCACATATTAATA
AGTTCCGACGAATCCTTGGAAAAGAAACAATAGGTACCTCTGAAACAATGCATAGTTTGGCAGC
CTGCTGTGCTTGGCATAGTTGTTGATCCAACTGTGAAAAGTAGAGAACATAAGAAACAAAATAA
CAACGAAGTAAAGAACCTTACTCTATCTTTGAATAGGGGCGACATATGTCAAGAAAAACATATT
TCATATTTTCTTACTTCTTAGGTCTGTATGCGTGGAGCTAAAATGACATCTCAGTAAGACAACA
GGTAACGTCATGAAATTTCAGCAACTATCCCTAATGTTTCATCTGAGCCCAGAGATCTAATATT
TTTAATAACCAATGTCATTTCCAAAAATAAAAGTCACCCAGTATTGGATCCAGGGGATATTTAG
ATGCTGAATTTTGCAGTGGCTCATGTTTCATGAGAAAAATGAGACCAGTTCCCACCACCTTGGC
ACAGTTTCCTTTTTCTTTTTTTTTTCTATAAAACCCAGCCAACCAGCCAAAACAAGTGTGTCTA
TCTTCCATTTCTAATAGTATGTTGAAAATTTATCTTTTTATCCGTGATATGAAGAAACTTTTTT
TTTTACAAAAAAGGGGGTTTATCCATGATATAAAGTAAATCAAAACATAAGTAATATATTGCAC
AGAGCACTTACTTAGGATATGCAGGAAACAATAATGATCCTATCAAGCATGTACCAAGTATTCA
AATATCTAAACACAAGCAAAATTGGTGTTTATGTTTCTCAATCAACCACAAGTTTCTTAGCAAA
GGTAAATGAATAGATATATTTAGGGGGAATAAAGGGCAGCACTTGATCACACGGTGTTCAATGA
AAATAATATTTGAAATCATAATAGTGCATCCATTTTCTCATGTGCAATAGCTTTGAACCTTTAA
AATACCAAAAGAAATTGATAGAATAAGGTAAAATTATAATGCAAACACCTGCATGAGATCTTCC
AATGTTTCCTTGTTGATGCGATTTATTAGATGAGTGGACTGTTCAGCATTGATGTAATCCACAT
CAATAGAAATTTTAAGCAATATAGCCTGCGCATTTTGAAAGAAAATGAATGTACATGAGACCAC
CAAACGATTCTTATTGAGGCAATTCTGTAGACTAATGGAGCATAAACTGCTAAGAAAGATATAA
AGTAAAGGATAATAAGAGCATCATTGTCTACCAAAATCAATATATTCCCAAATAAAACCCTAGC
ATGTATTACACGTTACCAAGTGAGCACCTTACTATGATAGCACTATCATAATATCATGTTTGGC
TAGAAATAAACAGACGGAAGCACCTTAATCCAGAAACTCACCGGGATAATATCTAGAACTGCAA
ATATTTTAGCTGCATACTTTGAAGCATAGTAGGTTGAGACATATTGAAGATCTGGA
Conservation Information
Conserved circRNAs osa_circ_023682
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021