Detail information of AT2G02560_circ_g.4


General Information
CircRNA Name AT2G02560_circ_g.4
ID in PlantcircBase ath_circ_012575
Alias 2:690739-690946
Organism Arabidpsis thaliana
Position chr2: 690739-690946  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G02560
Parent gene annotation Cullin-associated NEDD8-dissociated protein 1
Parent gene strand +
Alternative splicing AT2G02560_circ_g.1 AT2G02560_circ_g.2 AT2G02560_circ_g.3 AT2G02560_circ_g.5 AT2G02560_circ_g.6 AT2G02560_circ_g.7 AT2G02560_circ_g.8 AT2G02560_circ_g.9
Support reads 4
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G02560.1:1
AT2G02560.2:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATAGCTCTCAGGACTGTTGTCGCTCAAATTGCTCCTACGCTTGCTCCATCTATTCTTGTTACT
CTAACACCACAAATGATAGGAGGAATAAGTGGCCAGtcttgctccattggtgaagaaggttgga
gaagaacgaattgttgaaatgaccaacaagttatgtgataaactgctgcatgggaaagaccagc
atcgtgat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TCTTGCTCCATTGGTGAAGAAGGTTGGAGAAGAACGAATTGTTGAAATGACCAACAAGTTATGT
GATAAACTGCTGCATGGGAAAGACCAGCATCGTGATACCGCAAGCATAGCTCTCAGGACTGTTG
TCGCTCAAATTGCTCCTACGCTTGCTCCATCTATTCTTGTTACTCTAACACCACAAATGATAGG
AGGAATAAGTGGCCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.268434015
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020