Detail information of Os04g0568751_circ_ig.3


General Information
CircRNA Name Os04g0568751_circ_ig.3
ID in PlantcircBase osa_circ_024932
Alias Os_ciR3028
Organism Oryza sativa
Position chr4: 28581069-28582466  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os04g0568751_circ_ig.2
Support reads 4
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATGCAAGTAGACTTGAAGGCTACTAGTAATTCCAATAAGTAGACTTCGCAAGTGGACAGTATC
CAGAGGAAGACTCGAGTTAAAGAACTGTTCAATGGTttgaagagtgttgagtttcgcacataat
ttaggaaccgtcaaattgttcaatttattagccaccttctcttcaggaactgtaggcacaatga
gtttcctt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTGAAGAGTGTTGAGTTTCGCACATAATTTAGGAACCGTCAAATTGTTCAATTTATTAGCCACC
TTCTCTTCAGGAACTGTAGGCACAATGAGTTTCCTTTTTGCAAATGGGTTCACTGATTCTGCAT
AACGTGTCAAGACTGGAGCACTGGGAAGCAAGGTAGCTCTAGGAACTGCAGTGGGGAAAAACAG
AGAGAACAAAATGTTAGTTACCAAAGTATAAATAAAATAATATGGTTTCATGCTTCTATAGTTT
CATGGTATCAGATAACAAAGTATAAACCTGTGGCAATAAAGAACATAGTAAAAGAGGGTCAATA
GACTTCATAATTATATTATGACCAAAAGGATATCCCAAGTCTGACACTGTTTGCATGCAGAGAA
CTCAAGAAAACAGACCAACTGTGCAAAATCAGCACTGTAGAACCAATGGAATCAATGCCTACGA
GGAGGTTGCTAACCTGATTAACCTGTTGAGAAATGATGCCAGATTTAACGTCCATAGTTAAACC
TGTTTTTAAACCAGAAAAAGGTAGTGCATAAAGCACTCAAAGGTCCAGCAACATTTCTTGCTAC
AGTGTTTTTTTTTTCAATTTCGCAAAGAAAAGAAATTATTTGGACCTGCAGAAAGTAGAGAAGA
AAAGCTAGCCAGGCAGCATTGCTGCTTGGGATGAGAGAGAACAGAGATGAGGGGGAAGAACCTT
GGGACAGAAAGACTAAAGTTTATTCATAGTTTCTTGCTTTGTCTCAAACAAATGCTGCCATGCC
CTCTTTGTAGGTTGGCCCTAACAGAAGGAACTAACAACTCAAACTTATAAGATATGCAACTAAC
ATGTCAGATGGGCAACCACATAATCCGCTGCTACAATTATAGTGTCTTTGCAAACTGTAATAGC
CTCGCAATGTAAAGAAGAAGAATGATTTTTTTTTTTTTGCGGGGAAGAAAAAACCATGAGAGCT
TGACATATTAGCTATTGGTTATTTGGTGTAGAGAAACTGTAGCACAAGTTGGCATACAGTGATT
GAACTGAAATGTTAGTGATGTCAAATAATAGTGTTTTATTATTGGGTATAGTCATTTTTTAGAA
GTCATCATTTGACATTTGCAGTGTCACCCAAAAGAAAGAGCACAAGATATCAGCATCTCGCAGC
AATGACATCAGAAATTTATGTAATAGGGCCCTGATTGGGTTATATTCTTTTCGTGCCCTGTCTG
TTGTGCATGTACTGGACCTCATCCAAGATAATGCATCAGCGTTGACACAAAACCTAACACATAC
CTTGTTGATTTTCCATGTGATGCAAGTAGACTTGAAGGCTACTAGTAATTCCAATAAGTAGACT
TCGCAAGTGGACAGTATCCAGAGGAAGACTCGAGTTAAAGAACTGTTCAATGGT
Conservation Information
Conserved circRNAs NA
PMCS 0.123531843
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015