Detail information of BGIOSGA032657_circ_g.1


General Information
CircRNA Name BGIOSGA032657_circ_g.1
ID in PlantcircBase osi_circ_008838
Alias Chr10:7943444_7943716(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 5867034-5867306  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method find_circ
Parent gene BGIOSGA032657
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   Yes-No
Splicing signals   GT-CA
Number of exons covered BGIOSGA032657-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACTGCAAGGATGAAGACTCACAATGACACTCCTTTTCGAAAAAGAAAGAAAACTAAATAACTGC
AAGGACAATGATTCACAACTGAAGAAATTATACTGGggtaagagctgttgttttatctccctga
ccttcttttgtgagaaatgcttgattcaattgttgatgagctgagaacggactagttggaatct
gtatatta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTAAGAGCTGTTGTTTTATCTCCCTGACCTTCTTTTGTGAGAAATGCTTGATTCAATTGTTGA
TGAGCTGAGAACGGACTAGTTGGAATCTGTATATTAGCCGCATGATGTCTTAAACGTCCTTCAT
GGCTGAGTATCTCAGGATTCACTATCGTAGAAAGAAAACTAAATAACTGCAAGGATGAAGACTC
ACAATGACACTCCTTTTCGAAAAAGAAAGAAAACTAAATAACTGCAAGGACAATGATTCACAAC
TGAAGAAATTATACTGG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021