Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | AT2G01910_circ_g.2 |
ID in PlantcircBase | ath_circ_012514 |
Alias | At_ciR1942, Ath_circ_FC1132, Ath_circ_FC1133 |
Organism | Arabidpsis thaliana |
Position | chr2: 418299-419265 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | AT2G01910 |
Parent gene annotation |
65-kDa microtubule-associated protein 6 |
Parent gene strand | + |
Alternative splicing | AT2G01910_circ_g.1 AT2G01910_circ_g.3 AT2G01910_circ_g.4 AT2G01910_circ_g.5 |
Support reads | 4 |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT2G01910.2:4 AT2G01910.1:4 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.393695683 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
418470-419262(+) |
Potential amino acid sequence |
MIQKLKTERKSRFQKLKDVVASLFELWNLMDTPQEDRTKFGKVTYVVRSSEANITEPGILSTET IEQVSTEVDSLSKLKASRMKELVMKRRSELEDLCRLTHIQPDTSTSAEKSTALIDSGLVDPSEL LANIEMQINKIKDEAQSRKDIMDRIDRWLSACEEENWLEEYNLSDRLNKVLGYVNEVHALCGVL GVDFSQTVSAVHPSLHRTDQEQSTNISDSTLEGLEHMIQKLKTERKSRFQKLKDVVASLFELWN LMDTPQEDRTKFGKVTYVVRSSEANITEPGILSTETIEQVSTEVDSLSKLKASRMKELVMKRRS ELEDLCRLTHIQPDTSTSAEKSTALIDSGLVDPSELLANIEMQINKIKDEAQSRKDIMDRIDRW LSACEEENWLEEYNLSDRLNKVLGYVNEVHALCGVLGVDFSQTVSAVHPSLHRTDQEQSTNISD STLEGLEHMIQKLKTERKSRFQKLKDVVASLFELWNLMDTPQEDRTKFGKVTYVVRSSEANITE PGILSTETIEQVSTEVDSLSKLKASRMKELVMKRRSELEDLCRLTHIQPDTSTSAEKSTALIDS GLVDPSELLANIEMQINKIKDEAQSRKDIMDRIDRWLSACEEENWLEEYNLSDRLNKVLGYVNE VHALCGVLGVDFSQTVSAVHPSLHRTDQEQSTNISDSTLEGLEHMIQKLKTERKSRFQKLKDVV ASLFELWNLMDTPQEDRTKFGKVTYVVRSSEANITEPGILSTETIEQVSTEVDSLSKLKASRMK ELVMKRRSELEDLCRLTHIQPDTSTSAEKSTALIDSGLVDPSELLANIEMQINKIKDEAQSRKD IMDRIDRWLSACEEENWLEEYNL(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Ye et al., 2015;Chen et al., 2017a |