Detail information of AT2G01910_circ_g.2


General Information
CircRNA Name AT2G01910_circ_g.2
ID in PlantcircBase ath_circ_012514
Alias At_ciR1942, Ath_circ_FC1132, Ath_circ_FC1133
Organism Arabidpsis thaliana
Position chr2: 418299-419265  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ
Parent gene AT2G01910
Parent gene annotation 65-kDa microtubule-associated protein 6
Parent gene strand +
Alternative splicing AT2G01910_circ_g.1 AT2G01910_circ_g.3 AT2G01910_circ_g.4 AT2G01910_circ_g.5
Support reads 4
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G01910.2:4
AT2G01910.1:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATTAAAGACGAAGCACAGAGTCGAAAAGATATCATGGACAGAATTGACCGTTGGCTCTCTGCA
TGTGAAGAAGAAAATTGGCTGGAAGAGTATAATCTGtctgatcgtctcaacaaagtgttgggtt
atgtcaacgaagtccacgcactatgcggtgttcttggagttgactttagtcaaacagttagtgc
agttcatc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 684
Transcript exons: 418299-418514,418621-418776,418861-419020,419114-419265
TCTGATCGTCTCAACAAAGTGTTGGGTTATGTCAACGAAGTCCACGCACTATGCGGTGTTCTTG
GAGTTGACTTTAGTCAAACAGTTAGTGCAGTTCATCCAAGCTTGCATAGAACAGACCAAGAGCA
ATCTACAAACATTAGTGATAGCACATTAGAGGGTCTTGAGCACATGATTCAAAAGCTTAAAACT
GAAAGAAAATCCCGATTTCAAAAGCTAAAGGATGTAGTGGCTTCACTCTTCGAGCTATGGAATC
TAATGGACACACCACAGGAAGACAGAACTAAATTTGGGAAAGTTACTTATGTTGTAAGATCATC
TGAAGCTAATATCACTGAGCCGGGAATCCTTTCGACCGAAACAATTGAACAGGTATCTACGGAA
GTGGACAGTCTCAGTAAACTGAAAGCAAGCAGAATGAAGGAGCTTGTAATGAAACGAAGATCCG
AGTTAGAGGATCTTTGCAGACTAACTCACATTCAACCTGACACAAGCACTTCCGCTGAGAAATC
AACGGCATTAATAGATTCTGGATTAGTGGACCCTTCAGAGCTTCTTGCAAATATTGAAATGCAA
ATAAACAAAATTAAAGACGAAGCACAGAGTCGAAAAGATATCATGGACAGAATTGACCGTTGGC
TCTCTGCATGTGAAGAAGAAAATTGGCTGGAAGAGTATAATCTG

Genomic sequence TCTGATCGTCTCAACAAAGTGTTGGGTTATGTCAACGAAGTCCACGCACTATGCGGTGTTCTTG
GAGTTGACTTTAGTCAAACAGTTAGTGCAGTTCATCCAAGCTTGCATAGAACAGACCAAGAGCA
ATCTACAAACATTAGTGATAGCACATTAGAGGGTCTTGAGCACATGATTCAAAAGCTTAAAACT
GAAAGAAAATCCCGATTTCAAAAGGTAGACTTGTATTTATATACTTGTTTGAACAATACTATTC
TTCTATGTCATATTCATTTATTGACTTGTCATTTTTGTGTTCTCAATAATACTTCTAAATCTGC
AGCTAAAGGATGTAGTGGCTTCACTCTTCGAGCTATGGAATCTAATGGACACACCACAGGAAGA
CAGAACTAAATTTGGGAAAGTTACTTATGTTGTAAGATCATCTGAAGCTAATATCACTGAGCCG
GGAATCCTTTCGACCGAAACAATTGAACAGGTTCAGTAGAAGCACTTATATAATTCTACATCTA
CATCTTTAACCTCGTTCTTGATTTGAGTCTTTGTTTTGGTTTTACAATAGGTATCTACGGAAGT
GGACAGTCTCAGTAAACTGAAAGCAAGCAGAATGAAGGAGCTTGTAATGAAACGAAGATCCGAG
TTAGAGGATCTTTGCAGACTAACTCACATTCAACCTGACACAAGCACTTCCGCTGAGAAATCAA
CGGCATTAATAGATTCTGGTATATGTGATTGAGGTTTGGTTTTTTTGAATAGTTGGTTTATTCT
TGCCACTTCAACTTGTTTTTAAGCCTAGCTTCCTTATGTTTCTTCAGGATTAGTGGACCCTTCA
GAGCTTCTTGCAAATATTGAAATGCAAATAAACAAAATTAAAGACGAAGCACAGAGTCGAAAAG
ATATCATGGACAGAATTGACCGTTGGCTCTCTGCATGTGAAGAAGAAAATTGGCTGGAAGAGTA
TAATCTG
Conservation Information
Conserved circRNAs NA
PMCS 0.393695683
Functional Information
Coding potential Y
Potential coding position 418470-419262(+)
Potential amino acid sequence MIQKLKTERKSRFQKLKDVVASLFELWNLMDTPQEDRTKFGKVTYVVRSSEANITEPGILSTET
IEQVSTEVDSLSKLKASRMKELVMKRRSELEDLCRLTHIQPDTSTSAEKSTALIDSGLVDPSEL
LANIEMQINKIKDEAQSRKDIMDRIDRWLSACEEENWLEEYNLSDRLNKVLGYVNEVHALCGVL
GVDFSQTVSAVHPSLHRTDQEQSTNISDSTLEGLEHMIQKLKTERKSRFQKLKDVVASLFELWN
LMDTPQEDRTKFGKVTYVVRSSEANITEPGILSTETIEQVSTEVDSLSKLKASRMKELVMKRRS
ELEDLCRLTHIQPDTSTSAEKSTALIDSGLVDPSELLANIEMQINKIKDEAQSRKDIMDRIDRW
LSACEEENWLEEYNLSDRLNKVLGYVNEVHALCGVLGVDFSQTVSAVHPSLHRTDQEQSTNISD
STLEGLEHMIQKLKTERKSRFQKLKDVVASLFELWNLMDTPQEDRTKFGKVTYVVRSSEANITE
PGILSTETIEQVSTEVDSLSKLKASRMKELVMKRRSELEDLCRLTHIQPDTSTSAEKSTALIDS
GLVDPSELLANIEMQINKIKDEAQSRKDIMDRIDRWLSACEEENWLEEYNLSDRLNKVLGYVNE
VHALCGVLGVDFSQTVSAVHPSLHRTDQEQSTNISDSTLEGLEHMIQKLKTERKSRFQKLKDVV
ASLFELWNLMDTPQEDRTKFGKVTYVVRSSEANITEPGILSTETIEQVSTEVDSLSKLKASRMK
ELVMKRRSELEDLCRLTHIQPDTSTSAEKSTALIDSGLVDPSELLANIEMQINKIKDEAQSRKD
IMDRIDRWLSACEEENWLEEYNL(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chen et al., 2017a