Detail information of PGSC0003DMG401013013_circ_g.1


General Information
CircRNA Name PGSC0003DMG401013013_circ_g.1
ID in PlantcircBase stu_circ_000258
Alias chr02:22858873|22863838
Organism Solanum tuberosum
Position chr2: 22858874-22863838  JBrowse»
Reference genome 3.0.38
Type   e-circRNA
Identification method CIRI2
Parent gene PGSC0003DMG401013013
Parent gene annotation Conserved gene of unknown function
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues stem
Exon boundary   No-No
Splicing signals   CT-CC
Number of exons covered PGSC0003DMT400033864:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCTACCAACACTGAGATCTGGATTGCAGAGAAATAGATTTTGATCGTGTAGATGGAAAAACAG
AGAATACCTTTAGCACCCTTCAGCTTCTCCAGATTCtctgatgttgtgcacataaatgtctgca
tacacaccttgcactgccatcatttacaaaacagacgagttaaccaagaaccaaaacaaagttt
tatgaatg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TCTGATGTTGTGCACATAAATGTCTGCATACACACCTTGCACTGCCATCATTTACAAAACAGAC
GAGTTAACCAAGAACCAAAACAAAGTTTTATGAATGAATTTGCAGGCCTCAAACCGCAACCTAA
CTGATGGCTAAGAAAAATCTTCTAGCATTAGTCATAAGCTATAACAAATTGTTATAAACAGGCC
TGCTAGCTAATAACTGGGAATCATGGAAATAGAACTTCCTAATCCACTCTATATCCAACTTGGG
AATTAAGTTTCAAGAACAAGTTACTCATGTAACTAGTCCCTCATCTGCCAACAGTTGGACAACA
GAAATGATATCACTACCTCCTACTGTTAAGGGTCATAAAAGTATGCCCAAAAAAAAAGAAAAGA
GTATAGGTGTCCATGTCATATTTTGCTTAATGAATATACAGAAAGACAGTAGTAGTACATCAAG
AATTTTAGTAACATCATAAAACATAATCAAAACGCTCCATTGAAATTGAGCTATATCAAGTTAA
AAGTATTCTGATGGTCATACAGACACCGCACACTCTTTTAAAACCAAGAGGCCAAAACAGTTAA
GCAAAACCAATAGGAAAGCTGACCTAGCCAAAACAAATTGGCCTATATTACAGTAAACTGTAAA
TTGACTTCGAATAGATTCAAATTAGCCCTCTCAATAAGTTTAGGCAAGGAGTAGTTCACAATTT
GACAAAACATAAGCTTATTGAAAGATTTTTAAAAAGTCTGAACCTTCAAACTAGATCACTTCAA
ATTTTATCTTCCAATATTCAGCAAAAAACAATGGAGGGAAGGAACTGGCTAATGTTTGTTTTCT
CTTAAAATCAGGTATAAGTTAGCCTATATTTATAAAAAAGCTCGCTGTGGAATACAAATAAATC
AATGAGCACATATCTCAATGCTAGGGGGGCATTAGATTGTTAAAATCTCTTGTATGTTTTTTTT
TTATGACCGTGGTGTCCGGACTAGCTTTCGCGCACCTCGACTAATTGCACGAGATACCTGTCAC
CTCCCACCAACATCAGGTACAAGGTAACTCTATTCACAAAGGCTAGGACAGATGAAAAGAATCA
CCTAGTGTTATTTATTTCCGCTGAGTTTTGAACCTAAGACTTCAGGGTTATTAACTACTTCAAT
GACCACTAGGTCACACCCTTGGGTGCTATTGTATGTGCTAGTGCTACTATCGGGCAGGCAAAAA
AATGTTTGTAAATTAGCAAGCAATCAATTATCAACTACTCATTCCCGAACAATATGTTCGAGAT
TTAAAAAGAGAAATACTTCTAACACACTAGAAGTAAAATTTAAGCACTTTGACATTCCGAAACC
GCAAACACAAAAGGTAGAATAGGAAAAATGCAAAAAACACACGACTAACAGGATACAACATTCA
GTCATTCACCATATATGCCTCCCTATTCTGATTCTATCACTAAATAGGGTCCATACCCCTAGTT
ATCCTATTTTATGAGTCTTCTACCTATTTTTTATTCTTTTTTATTGCAGTAATATCTGTACCCA
TTTTCTTGCAAGCACCTCAACTAATCCACTGAGTACGTGCAACTGGCACGGGTATCGCAGCACC
ATATAGCCCTGCCGACCAAGACTAGGCTGCTATGTTGCTTGGACTCAGGTGCGCGTATCCAAGA
CGGGTGTAGATCTGAGAGTTGGATTTGGCAAAATATAAATTTTAAGATTCGGGGGTACGAAACC
GAGTATGGACACGGGGTAAGGGGATTCCGCTAAAATGTTCAACATTATAAAAATAGATTTATAA
AGATAGTCTAAATTTGAGAGATATTTTGTAGAATTCAATTTGGAGTCAAATGTGACAATAGTTA
TCCTAGTCTTATCTCCTAACTAATTATAAAGCTAAAAAAATTATGTGCAAATGATAATTATTAA
GATTTGCTGTCCAAGCCATTAAGGATTTTTACACTACATAATAGTCCAACAAAGTCCACAACAC
TGATTATACAAAGAGTAGGCCCATGAAAGGTAAAATGTCATTAGAAGTGGTTAGGCCCAAATGT
TTAGTTGCAACCCATAAAGAGTAAACAAGAAATTTAAAAATCTCTGCAAAACCCTAGTTTATAT
ATTTTATTTCATCTTCCTCGCTAGTCGCCACTGCCTTTAAGAAAACAACAAGACCTCATCAGTC
AACCCTAGCTCATCGTCGAGTTTTTCAAATTCTCAACACCCCCACCCCACCCAAAAAAAATTTG
TTCTCGACTCAGGTCAAAGTATCCAGATGGCATTGACCAAATCTGACACGCACCGCACACCCGT
GTCGCGTTTGGCAGCCAAAACGAAGAGTCTGAGCAACATAGCTAGGCTGATAAGAAGGATTCAA
CCCCTTTTTGTGTAGAGGGAAATAATTCACCAATTGTCACCTCCATTGGACAATGAATCTTGAT
ATCCAAAGTTGTTACTACAACTCTTCAACTGCTAAGACACCATCGTCAAGGGAAATAATTATAT
CCAATTAATAGCCATAAATCCCCCAATGATGGATACATTTTCAAAACTGAATATATGTGCAATT
TCTTCATTACTTCCAACTTCGGTTGGAAGGGGAAGTGCTGGCAATTCAGTCTATCAATATGTAT
ATTACCCATTAACTTAAGTACTCCTTTCATCATATATTTATAAGACACTCTAGAAAAAATTGAA
GAGATGCTTCATATTCCATCTTATAGGAGATGGAGTGAATCATTTTTATTTACATTGCCCTGTG
GCAGCAGGCATTTGGTCCATGTATTTTGCAGTTTTTGGCATCAGCTGGTCAACAACACTCACCC
TAGAAAAAGCATTTGAAAGTTGGAACTTAAGAGAAGTGGATAGATCCATCAAGAAAATCTTGTA
AATGGTACCAGCTGTATATTCTGTTGTATATGGATGGAAAGGAACAGTGGGTGTTATGATCAGA
CTCCAATTCCAAAGTGCACCTTGAAATCTAAAAGTTTGATGAATCATTTTAGTTGGAGCAACCT
TTCCCCTGTAAATGATGTAATTCTCCTTTTAGATTTCATTAGCTCCCTCTCAATGGTTTAACAA
CCTTGAGTTTTTGCTTTAGGTTATAACTCCCAGACCCTGACTATTTTTTGTTGTACAGGGGTTA
TCACCTATTTCTCTCTGTAAATTCTTGCATCTTCTAGATGCTTTTGTAATACAACCTCTTAAGT
CATTCAAAAAAAAAAGAAGGAAAGAAGAAATGTTTGATACAATTCGCAAATTTCATGAATTCAA
ATTCATTAGACTATTCATACTTTCAATTTTCACATAATGCTTTTTATATTAAGCTTAAATTTGC
TAGCATTACAATAATATTTTCTTCCAGAACTACTAAGACATGTCAGTCAACTTAACATATTAAA
TTAGGTATTCAATCAAATTCCTCATAAACTAAAATATTGAGTAAGAAGAGAACTCCCTTCAATG
TCCTACCAACAGTCTTGTTACCCTTCTTTATGCATCTATTCTCACTTACGTAGTTACATAAGTT
CCTTAACAATGATTGTATCTCCATTAAGTGAAACTTTTCCTAGTTAACACTGGTTTTCAATTGC
CAATCTCTTTTTGCCCTAACTACTTTTTAGTTTCAAAATTTTCAGATTCAAACTTTCGGAAACT
AGTATCCCCACCTAGGTACAAATAGAAATTCAGTTTTTCATTTTTTAGATAATTCAACACAATA
CAACTCTTTCAGAAAAACAGTTAATGAACCTTGTCCCTTCAAATAAATCTAAAACTCTAAGCTT
CAGAAGTAACTGCAACAACAAAATGGGGTCTCAGAATTAGACCTAGACCAAGTTCCAACAAAGG
GGAAAAGAAGAAGTCCAAGTTGCAGCTATACATAAGAGTGTTCTAAAGGACAATTCAAGAGGGG
GGAACGGACATACAAAAGTTATTGGAAAGACACAAGGTAGCTAACTCTTTCTCCTTTTACTTCA
AAAAACATCACTACAATGCAGACATCAACTGCCGTTCATTTTACTTCAAAAGAAACTTTTTTTT
GAGAAAGTACTCCTAACAGAAACGTTAACAACAAATTGAGGAGAGTTCCTTTACATCCCACATA
AGGAGCAAAAGAAAAGAGTGAAGAGAACTAGGAAGAAATACTAAATGAAAATAGGGACTAGGGA
GTTTTGAGATTTTAATTTGGGCATTATAGAAGTTTGACGCACAAAATTAAAAGATTATCATTCA
TTCATGCATATTACAGACAATTATCAACCACTCAAACAAGAGTAATTCTCTATGTATGTGCTAT
TTGTACAGCTATCGGGTAACTATGTCCACTAAGGCTTAGGCAATAAATAATTTTTCACCTTCTC
CTATAGAGTTATAGGGGATGAACTCACGTAATGTCACCTCTGTTGGATACAAATCTTGATATCC
AAGGCTGTTACACAACTCTTCAACCACTAAGACACCCCCACCCCCCGGAGGAAAATCTATCCTA
ATATTATTATTATTATTAATAGCCTAAAAACGTAAACTTTTTCAAAACTGAACATATTTGCAAC
TTCATTACTATCCAGGTCAAGTGGGACGGGGAAGTGTTGGTCGTTCTTTCAACAAATGACTGAT
ACCAAGTCAATTTATATACAACTTCCGCAAATTTCATGAATTCAAATTCATTCAATTACTAAAC
ATTTTAATTATTATGTGATATGCTTCCCATCAAAACTTAAATTTGCAACAATACTGCAATATTT
TACTGCAAAAGAATGAAATTGAACACATTACCTGGATATTCATGGCCTTTTTGTTCGTATCGAG
CTGACTTCCTGCGACGATTTAACAAGTTAATATAAAATAGAGCTAAAATATTTATCTAAGAGGT
TTTCTACCAACACTGAGATCTGGATTGCAGAGAAATAGATTTTGATCGTGTAGATGGAAAAACA
GAGAATACCTTTAGCACCCTTCAGCTTCTCCAGATTC
Conservation Information
Conserved circRNAs NA
PMCS 0.129373973
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2018