Detail information of AT2G41620_circ_g.4


General Information
CircRNA Name AT2G41620_circ_g.4
ID in PlantcircBase ath_circ_017829
Alias 2:17353872-17354558
Organism Arabidpsis thaliana
Position chr2: 17353872-17354558  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G41620
Parent gene annotation Nuclear pore complex protein NUP93A
Parent gene strand -
Alternative splicing AT2G41620_circ_g.2 AT2G41620_circ_g.3 AT2G41620_circ_g.5
Support reads 1/2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G41620.1:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATAAGGAGAGACAGCTAAGATGAAAAATGTCACCTTGAGCTCGAAAGATTTAAGATCACGAGCT
AGTTGCTCTGCATTGATTCCCTCCCGTGCGAGTAGTctccaacactttcatcatgtagtcatta
aagcttcgaacattatccttttgggcttcctgaatagctgataccatagccatttcatgaacct
aaaacaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCCAACACTTTCATCATGTAGTCATTAAAGCTTCGAACATTATCCTTTTGGGCTTCCTGAATA
GCTGATACCATAGCCATTTCATGAACCTAAAACAAAACAATAACAATACACATCATATCGACCA
ATCCTCGCCAAGAAAATCAATCTATATGATGATAGATATAGTAAACCTTGGAGAAATAGAAGTA
CCTGTTGCAGGTATTCTTCAACGCTCGTCGCCTCAGCAGGGAACACATCCTCAAATGTTGTCTT
TTAAGAGTATTCAAAATAAATAAAAACATCACATAGTGGCAAAAAAGAATAATCACATTTGAAT
AGCAGACAGCAAGCTGAGAGATGTGTAAGCATACAAAGGTGGGACTCCAATGCCTTACAATACC
AATAGTCGGACCAAAGACACAGTCAGACAACAGCAAGTGATCATGAATTTGTTTGCTAAGACAG
CTAAAGAAGTAGATTCGTTTGACGACATATGAAAAATTTGTTTCACTACAAGTAAAAAGAAAAC
TACTTACTCACATATTGTACTTTCTTATCTCAAGGAAAAACACACCAATAGACAAAGTAATCCT
TGAAGCACATTATAAGGAGAGACAGCTAAGATGAAAAATGTCACCTTGAGCTCGAAAGATTTAA
GATCACGAGCTAGTTGCTCTGCATTGATTCCCTCCCGTGCGAGTAGT
Conservation Information
Conserved circRNAs NA
PMCS 0.144992856
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020