Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d045251_circ_g.1 |
ID in PlantcircBase | zma_circ_009859 |
Alias | zma_circ_0003157 |
Organism | Zea mays |
Position | chr9: 17054326-17058708 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d045251 |
Parent gene annotation |
Acyl-coenzyme A oxidase |
Parent gene strand | + |
Alternative splicing | Zm00001d045251_circ_g.2 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d045251_T002:9 Zm00001d045251_T005:9 Zm00001d045251_T001:9 Zm00001d045251_T006:8 Zm00001d045251_T009:8 Zm00001d045251_T003:9 Zm00001d045251_T008:8 Zm00001d045251_T007:8 Zm00001d045251_T004:9 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.130866043 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
17058660-17055280(+) 17054335-17054403(+) 17055294-17058112(-) 17054417-17058123(-) |
Potential amino acid sequence |
MFLLALMKETILFCFCRDRHGRIGGGGPPRRREVGRALRCRGDEGCMGWLATRRRSRRPHGPTR RVRPCLPQG*(+) MDASAEVDHLAAERSAARFDVEAMKVAWAGSRHAVEVGDRMARLVASDPVFRKDNRTMLSRKDL FKDTLRKAAHAWKRIVELRLTEEEAGMLRLYVDQPGYVDLHWGMFVPAIKGQGTEEQQKKWLPM AYKFQIIGCYAQTELGHGSNVQGLETTATFDPKTDEFVIHSPTLTSSKWWPGGLGKASTHAVVY ARLITEGKDYGIHGFIVQLRSLEDHSPLPGITLGDIGGKFGSGAYNSMDNGVLRFDHVRIPRDQ MLMRLSQVTREGKYVHSDVPKQLLYGTMVFVRQTIVADASKALSRAVCIAVRYSAIRKQFGSQD GGPETKVLDYKTQQSRLFPLLASAYAFRFVGDWLKWLYMDVTQKLEAKDYSTLQEAHACTAGLK AVTTSATADAIEECRKLCGGHGYLNSSGLPELFAVYVPACTYEGDNIVLLLQRSPWTHRRRWTT SPPRGRPRASMSRR*(+) MVLLSLRKTGSDATSRAMRSPTSTACREPAHATFIASTSKRAADLSAARWSTSADASMAISAKA EQYCLLHKCKQEHRQQTIQEAHCCSGNHVRHRAFYILQWHQLLQMLSQPSNQQYRHGLLAVLSS L*(-) MQPSSPRHRSARPTSRRRGGPPPPMRPWRSLQKQNNIVSFISASRNIDSKQFRKPTAVQVTMSA TELSTFFNGISCCRCCHSLQTSSTGMGFLQC*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |