Detail information of BGIOSGA002329_circ_g.1


General Information
CircRNA Name BGIOSGA002329_circ_g.1
ID in PlantcircBase osi_circ_010837
Alias Chr01:3242570_3243715(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr1: 3755061-3756206  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA002329
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   GT-CA
Number of exons covered BGIOSGA002329-TA:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCCCAGTAATCTACACAAGCACATGTTGCGAAGTACCTGCATTCAAGTAAGATCAGAAAGCCCA
CAAGCTAGCACAATGCTACACAACCAGGCACTTAAGggagtaaacccttccaatgaaagagaat
ggtgcttaacttctggcatagatggaatttggagtaagccgtactccatacccaaccttccaat
ttcaaggt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGAGTAAACCCTTCCAATGAAAGAGAATGGTGCTTAACTTCTGGCATAGATGGAATTTGGAGTA
AGCCGTACTCCATACCCAACCTTCCAATTTCAAGGTCTTTCCAACTGAAAATGTAAGAACAGTG
GTGCTCCTTGTATGCCCGAACAAACGAAACAAAAGCTGTAAGCCCTTTCTCCATGACATTTCGG
TCTTCCAATGCAGCACTTCTGATCTGTGACAGACAAGTGGGTAATTGGTTATTTTAAACACTAA
ATTTTTCTCTCAAGAAAAAAAATCATTTCTGGATTCAGATGCCTTCACAGGCAGACAACCTAAG
ATGATCTATAACAATAAGAAACTCACCTGTGGTACAATATCTACAGCATTTGTGGAACACTCCC
TTTCAGTGAGGGGTACACCTCTCCTCTTCAAGAACTCAACATAAGTATCTTCCTACAGAACAAT
TATAGCGCTAAGCATTTTACTAACAAGGCAATCCATTGTATCAAATCACTACTGCATGTGCATG
GTATGCATAGCCAAATATGTCTTTGAAATTCAACTACTGACTTCCACTTAGATAATGTCAAAGC
AGAGCAAGTACCTTCGGTAAGAGGAATACAATAGCATCTCCTTCTTGATCATAACGTGCAGTAC
GGCCAGCTCTATGTATGAACACATTGGGATCTTGAGGTGGATCATACTGGGGAAGAAACAAATG
TTTTATATCAACTAATGACAAGCACAAGGAAACAATTTAGGGAGTTATGTTCAAAGCATTACCT
GCACAATCAGATCAACATGTGGTATGTCAAGACCCCTTGCTGCAACATCAGTGCAAACTAGAAT
ACCACTTGAGAGAGCTGAAAATGATGCCAAAGCTTTCTCACGAGGGCCCTACATACCAGGAAAG
TAGCGCGGTAGCAATCAGTATGAAGGAAAGCTTTTGGAAGCGCCATGTACAACAAATCATGCAT
GTATTAGCTCTGTAACCTGCTTCATCTTCCCATGATAAGGAATTATTGGAGAACCTTTAAGTGA
GTCCAACAGCGGGAGAACAATAGCCCAGTAATCTACACAAGCACATGTTGCGAAGTACCTGCAT
TCAAGTAAGATCAGAAAGCCCACAAGCTAGCACAATGCTACACAACCAGGCACTTAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021