Detail information of Os01g0817700_circ_g.3


General Information
CircRNA Name Os01g0817700_circ_g.3
ID in PlantcircBase osa_circ_004590
Alias Os01circ26408
Organism Oryza sativa
Position chr1: 34805208-34805829  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method SMALT, Segemehl
Parent gene Os01g0817700
Parent gene annotation Similar to 2,3-bisphosphoglycerate-independent phosphoglycerate
mutase (EC 5.4.2.1) (Phosphoglyceromutase) (BPG-independent PGAM
) (PGAM-I). (Os01t0817700-01);Similar to 2,3-bisphosphoglycerate
-independent phosphoglycerate mutase (EC 5.4.2.1) (Phosphoglycer
omutase) (BPG-independent PGAM) (PGAM-I). (Os01t0817700-02)
Parent gene strand +
Alternative splicing Os01g0817700_circ_g.4
Support reads 3
Tissues leaf and panicle
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os01t0817700-01:3
Os01t0817700-02:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATGTTTTGGATGGCAGCAGTGTTGGTTTTGTAGAGACACTAGAGAGTGATCTTTCTCAGCTTC
GTGACAAGGGTATTGATGCACGGATTGCATCTGGTGgtggagattagtgaaggctcatggaaca
gctgttggtcttcctagcgaagatgacatgggcaacagcgaagtgggtcacaatgctcttggtg
ctggtcgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGGAGATTAGTGAAGGCTCATGGAACAGCTGTTGGTCTTCCTAGCGAAGATGACATGGGCAAC
AGCGAAGTGGGTCACAATGCTCTTGGTGCTGGTCGCATTTTTGCTCAGGGGTAAGCTGTTGTTG
AGTTTTGATTCATTTGGGAACTATAGGTTGGATCACTCTGCATGTTTTGTGACAAGCGTGTTTC
ATTCTCACTGTAGTGCTAAGCTTGTGGACCTTGCTCTTGCCTCTGGGAAAATTTATGATGGAGA
GGGGTTCAATTACATCAAAGAATGTTTTGACAAGGGTACCCTGCACCTTATTGGTTTGTTGAGT
GATGGAGGCGTTCACTCCCGTCTTGATCAAGTGCAGGTTTGTTAAGCTCTGATGAATGGCGCCT
TATATTGCAATGTGTTGTTTATTTACTGTCAATTTTTAAATTGGTGTGTTCTGTTTCACTCTAT
TTCAGCTGCTTCTGAAAGGTGCCAGTGAGAGGGGAGCAAAAAGAATTCGTGTTCACATTCTTAC
TGATGGACGCGATGTTTTGGATGGCAGCAGTGTTGGTTTTGTAGAGACACTAGAGAGTGATCTT
TCTCAGCTTCGTGACAAGGGTATTGATGCACGGATTGCATCTGGTG
Conservation Information
Conserved circRNAs NA
PMCS 0.259233293
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015