Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os12g0481100_circ_g.2 |
ID in PlantcircBase | osa_circ_011481 |
Alias | Os12circ06317 |
Organism | Oryza sativa |
Position | chr12: 17687838-17691647 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | SMALT, Segemehl |
Parent gene | Os12g0481100 |
Parent gene annotation |
Similar to cDNA clone:J033010C22, full insert sequence. (Os12t04 81100-01) |
Parent gene strand | - |
Alternative splicing | Os12g0481100_circ_g.1 |
Support reads | 2 |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os12t0481100-01:9 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.103289534 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
17691614-17687960(+) 17691625-17687840(-) |
Potential amino acid sequence |
MSGIDLKATSCTFVASISAFLNILSSLSS*(+) MPDIVVATPGRIIDHLRNSLSVGLEDLAILILDEADRLLELGFSAEIQELIRMCPRRRQTMLFS ATMTEEINELVTLSLNKPVRLEADPSLKRPATLTEEVVRIRRAREANQEAVLLALCLKTFKDKV IIFSGTKHSAHRLKIIFGLSGMKAAELHGNLTQAQRLEALELFKKQEVDFLIATDVAARGIDIV GVRTVINFSCPRDARTYLHRVGRTARAGREGYAVTFVTDDDRSLLKAIAKKAGSQLKSRIVAEK PVAECAKLIEELEDQISTIIQEEREERILRKAEMEATKVQEVALRSMPDIVVATPGRIIDHLRN SLSVGLEDLAILILDEADRLLELGFSAEIQELIRMCPRRRQTMLFSATMTEEINELVTLSLNKP VRLEADPSLKRPATLTEEVVRIRRAREANQEAVLLALCLKTFKDKVIIFSGTKHSAHRLKIIFG LSGMKAAELHGNLTQAQRLEALELFKKQEVDFLIATDVAARGIDIVGVRTVINFSCPRDARTYL HRVGRTARAGREGYAVTFVTDDDRSLLKAIAKKAGSQLKSRIVAEKPVAECAKLIEELEDQIST IIQEEREERILRKAEMEATKVQEVALRSMPDIVVATPGRIIDHLRNSLSVGLEDLAILILDEAD RLLELGFSAEIQELIRMCPRRRQTMLFSATMTEEINELVTLSLNKPVRLEADPSLKRPATLTEE VVRIRRAREANQEAVLLALCLKTFKDKVIIFSGTKHSAHRLKIIFGLSGMKAAELHGNLTQAQR LEALELFKKQEVDFLIATDVAARGIDIVGVRTVINFSCPRDARTYLHRVGRTARAGREGYAVTF VTDDDRSLLKAIAKKAGSQLKSRIVAEKPVAECAKLIEELEDQISTIIQEEREERILRKAEMEA TKVQEVALRSMPDIVVATPGRIIDHLRNSLSVGLEDLAILILDEADRLLELGFSAEIQELIRMC PRRRQTMLFSATMTEEINELVTLSLNKPVRLEADPSLKRPATLTEEVVRIRRAREANQEAVLLA LCLKTFKDKVIIFSGTKHSAHRLKIIFGLSGMKAAELHGNLTQAQRLEALELFKKQEVDFLIAT DVAARGIDIVGVRTVINFSCPRDARTYLHRVGRTARAGREGYAVTFVTDDDRSLLKAIAKKAGS QLKSRIVAEKPVAECAKLIEELEDQISTIIQEEREERILRKAEMEATK(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Lu et al., 2015 |