Detail information of Os12g0481100_circ_g.2


General Information
CircRNA Name Os12g0481100_circ_g.2
ID in PlantcircBase osa_circ_011481
Alias Os12circ06317
Organism Oryza sativa
Position chr12: 17687838-17691647  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method SMALT, Segemehl
Parent gene Os12g0481100
Parent gene annotation Similar to cDNA clone:J033010C22, full insert sequence. (Os12t04
81100-01)
Parent gene strand -
Alternative splicing Os12g0481100_circ_g.1
Support reads 2
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os12t0481100-01:9
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTCAAGCCCAACGGAAAGTGAATTGCGTAGATGATCTATTATACGCCCAGGAGTAGCTACAAC
AATGTCAGGCATTGACCTTAAAGCTACCTCTTGTACctttgtagcttccatttcagcttttctt
aatattctttcctccctgcaaagaaagggtataaatactagttgtagtttgaacaaaagtctac
cgtaaact
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTGTAGCTTCCATTTCAGCTTTTCTTAATATTCTTTCCTCCCTGCAAAGAAAGGGTATAAAT
ACTAGTTGTAGTTTGAACAAAAGTCTACCGTAAACTTCCTTGAAACAAACCTTTCTTCTTGAAT
TATGGTAGAAATTTGATCTTCAAGTTCCTCAATCAATTTTGCACACTCAGCCACAGGCTTCTCT
GCAACAATGCGACTTTTCAGCTGTGAACCAGCTTTCTTTGCCTGAAAGCAATTCAACGAATACC
AATAAGTAACAATCAAAAGCAGTGGCTAAACGAAAAATAACATTGATCATCATAGTCACAATAA
TGCTCATACATTAACATATCTGTGCATATAGAAACCAATTTCGAACTTGAGGATCAGATAGTTA
TGTGCAAATTTGCAAATGCCCCTAATAAATGACATTATCACTTATCAGTGGTGGACCAGCCTCT
ATGCTGAGTGCATAGTACTCTCCCACACACCAAAGAAATTATTCTTACTAACTGCAACGTCATG
AAAGAACCCACATAACTATTCACATTAAACACGCTGATTAGGCTTTTAGTGTTCTGTGGAGTTT
TTTTAAGAATTTATTTTGGTTCACAGACCATTGCTCATAACAATATACTTACAATAGCTTTCAA
GAGGGACCTATCATCGTCAGTAACAAATGTCACAGCATATCCTTCTCTGCCTGCACGAGCAGTG
CGTCCAACACGATGTAGATAACTGCAACAGCATGAACAAGAAACATTTATGAAAGAAGTCAAAG
AACATAATTAAATGGCATAATTCTTCCTTATGACTGCAAGACAAAAAGGGGCAAAAGAAAACTA
ATGGTATTAGAGAAAAATGATATTGGGCTGGTACATGTGGAGGCTCAAAAACAGAACACACAAA
ATGCATACAACATCTGGAAGGTAACTTTTTTTCTCCTAAACCAACAATGCAAAATTCCGAAATG
TTGCAGAAAGATGTCCGAATAATCAGATAAAAGACAGAGACCAGTAAAATGGCACATTCTAGGA
CTACAGATTCTGCAAGACACACACAAAATACTCAACAAAAATGACCAACTCCCTTGTATTAATT
GCCAAAACTACATCGTTCACTGATAAATTCATATAACTTGTGCCATACATATGAATTATCATTA
CTTATTAGAAAGTGTAACAATTCCAAGAATCAAATTTAAAATAGATATACCACTGGTGATGAGC
TAAGCAGCATGGCAGTATAAGAGATTCATATCATGAAAATTAATATACGAACTGAACCAGGAGC
AATTAAATTATGTTCCAATGAACAATACTCTCATCAACCATATAACACATAAGTACAAATATTT
CATAATCATTGGAAGCTTCACAAAACTAAACGGAAGGCATGCAAAAAAAACAAACATAGCAGAA
CTGTGTCCACTTATTTAGTGCTTACGTTCTGGCATCACGCGGGCAGGAAAAATTTATTACAGTT
CGAACACCAACGATGTCAATCCCCTACAAGTCAAACCAACAATTCATCAACAAAAAAAAATGAA
ATATAAAAAAATGTATTTATATTTCTCTTACATTATCTTTTCTGTTTTTATTATCACAACATAA
TCTTATTATTGCATATATGAAAATTATGAAAGATATAAAATTTTACTCACACGAGCTGCAACAT
CAGTTGCAATCAGGAAGTCCACTTCTTGCTTTTTGAAAAGCTCTAAAGCCTATAGAAGAATGAA
AATTTTCATTAGGTTAGTATGCTAGAGCTATTTATCAGTGAGCAGAAGTATCAAAATGTACAAT
GCAAAACAAGAACTAGTATATTCCCAAAACAATTTGGAAACATGTTACATGTGCACAGTCAGTA
GAAGAGGAAAATTATGGGGGTGAAAATACTAGTAAAGGGCATGTAGGCTACTTTTCATAATGAT
AAGTTTTATAGTTTATACACTATATGATATCTGATAATATACAATGTTACCGCAATTCTGTGAG
CACATTTTAATGAAGATAATGAAAAATAAAGGGTTCATAACACAAAAGCTGCCATGGTACTAAA
AATTACAATTAGGAAACATGGATGTGAGCTAAGGAGACGGTAAAAGGAAGGTAAAGGAAGAACT
GTAACATAAAATCACCTCAAGCCGCTGGGCCTGCGTAAGGTTGCCATGAAGTTCAGCAGCTTTC
ATCCCGGAGAGACCAAATATTATTTTCAATCTGTGAGCAGAATGCTTTGTGCCACTGCAAAGGG
ACATGAATATCAACATATTATACAAAATATACATGTGATTAAGTACTAGAATCATCCAGTACAC
AAACATGCAGTAGGACAGTAAATAGGAGTCTAGGAGTAACAGCAATAGTATGACACAAGCATGC
ATTAACTATATGTCAACATGTGATGCAGACAAATGATAATAGTTCCTATGGAATGGTGGAACAC
ATGCACATGCACTACATCTGTTGCTGGGCTTAGCGAGTCAATCATGTATTCATCGAATCCAGTG
AAACACATGTGCTTCCCACTAGATTGTGCTACCCTGAATGTACTCTCGGACTCTCCGTTAGCAC
TGAGCAGAGTAGTAAGCCAAACTATACATCTTATAATGCCCAAAACTGAGGAACTGTTACACTG
AGTCATTGACAAAAGCAATAAAGCCATAAATTACAATCAGGTCCTCCAGAACACTAACCTGAAA
ATGATTACTTTATCCTTGAAAGTCTTCAAACAGAGAGCAAGCAGAACAGCTTCTTGATTTGCTT
CGCGTGCTCTTCGTATTCTAACCACCCTGATGATGAGCAAATAATTAGGAAATGGAGATGTTGT
TAGTCATGGAATACAGCACACATAACCTCAATGTTTAGACTTAGGAAAAAAGGTGTACTCTTCT
GTCAATGTTGCAGGCCGTTTCAGAGAAGGATCAGCTTCAAGACGGACTGGTTTGTTCAGTGAAA
GTGTCACAAGCTCATTAATTTCTTCTGTCATCGTAGCAGAAAATAGCATTGTCTGTCTTCTTCT
AGGACACATGCGAATCTGCATTTATTATGGAACCCCATTACAGTAAAAGAATTATGAGTCCCTT
ATGAAAACAAGGATAAAATCAATTATTTCTAGAGAAACTACCCACAAGTCCAAAGTTGAAGTTA
TAGATGACAACGGAATCATTCTTTGAATGTTTGACAGTTGAGTAGATATAAGGACCCAGAAAGA
TTTAAATGGCTAATTCTGAATCTATTGACCATTGAATACCCTTTTCCCAACACCCAGTTCAGCC
CTACAAACTTCCACAGCCTCCATTCCCAATCTCCAGCAATACCTCCCAAACAATAGAAAGCTAT
CCAGTATTTAAATAAAGACTAATCGCAATTTCATTATCTGTCCAAATGTAGAAGATGAACAAGA
AAATGAAATAACATGTATGATACTTTTGATTTCTATACAATGTTTTTCTGCATCAGCATAAAAA
AGCTGCAAGTCTGTAACCATGTTCAGTGAACAATGCCTAATCTACAGCATGCTGCTGATGAAAA
AGCATCTCATTAATTCAGCTGCTCTGCTTCCAACAGACCCACTTGAAGAACATTTCCTTGAGAC
CCAAATGTCAAACTGCCAAAGTGCATAGAAAGCAGAGAATTTTCGAAGTTACCAGTTCCTGAAT
TTCAGCACTGAAACCGAGTTCTAGCAAACGATCAGCCTCATCAAGGATCAAAATTGCAAGATCT
TCAAGCCCAACGGAAAGTGAATTGCGTAGATGATCTATTATACGCCCAGGAGTAGCTACAACAA
TGTCAGGCATTGACCTTAAAGCTACCTCTTGTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.103289534
Functional Information
Coding potential Y
Potential coding position 17691614-17687960(+)
17691625-17687840(-)
Potential amino acid sequence MSGIDLKATSCTFVASISAFLNILSSLSS*(+)
MPDIVVATPGRIIDHLRNSLSVGLEDLAILILDEADRLLELGFSAEIQELIRMCPRRRQTMLFS
ATMTEEINELVTLSLNKPVRLEADPSLKRPATLTEEVVRIRRAREANQEAVLLALCLKTFKDKV
IIFSGTKHSAHRLKIIFGLSGMKAAELHGNLTQAQRLEALELFKKQEVDFLIATDVAARGIDIV
GVRTVINFSCPRDARTYLHRVGRTARAGREGYAVTFVTDDDRSLLKAIAKKAGSQLKSRIVAEK
PVAECAKLIEELEDQISTIIQEEREERILRKAEMEATKVQEVALRSMPDIVVATPGRIIDHLRN
SLSVGLEDLAILILDEADRLLELGFSAEIQELIRMCPRRRQTMLFSATMTEEINELVTLSLNKP
VRLEADPSLKRPATLTEEVVRIRRAREANQEAVLLALCLKTFKDKVIIFSGTKHSAHRLKIIFG
LSGMKAAELHGNLTQAQRLEALELFKKQEVDFLIATDVAARGIDIVGVRTVINFSCPRDARTYL
HRVGRTARAGREGYAVTFVTDDDRSLLKAIAKKAGSQLKSRIVAEKPVAECAKLIEELEDQIST
IIQEEREERILRKAEMEATKVQEVALRSMPDIVVATPGRIIDHLRNSLSVGLEDLAILILDEAD
RLLELGFSAEIQELIRMCPRRRQTMLFSATMTEEINELVTLSLNKPVRLEADPSLKRPATLTEE
VVRIRRAREANQEAVLLALCLKTFKDKVIIFSGTKHSAHRLKIIFGLSGMKAAELHGNLTQAQR
LEALELFKKQEVDFLIATDVAARGIDIVGVRTVINFSCPRDARTYLHRVGRTARAGREGYAVTF
VTDDDRSLLKAIAKKAGSQLKSRIVAEKPVAECAKLIEELEDQISTIIQEEREERILRKAEMEA
TKVQEVALRSMPDIVVATPGRIIDHLRNSLSVGLEDLAILILDEADRLLELGFSAEIQELIRMC
PRRRQTMLFSATMTEEINELVTLSLNKPVRLEADPSLKRPATLTEEVVRIRRAREANQEAVLLA
LCLKTFKDKVIIFSGTKHSAHRLKIIFGLSGMKAAELHGNLTQAQRLEALELFKKQEVDFLIAT
DVAARGIDIVGVRTVINFSCPRDARTYLHRVGRTARAGREGYAVTFVTDDDRSLLKAIAKKAGS
QLKSRIVAEKPVAECAKLIEELEDQISTIIQEEREERILRKAEMEATK(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015