Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Os12g0481100_circ_g.2 |
| ID in PlantcircBase | osa_circ_011481 |
| Alias | Os12circ06317 |
| Organism | Oryza sativa |
| Position | chr12: 17687838-17691647 JBrowse» |
| Reference genome | IRGSP-1.0.38 |
| Type | e-circRNA |
| Identification method | SMALT, Segemehl |
| Parent gene | Os12g0481100 |
| Parent gene annotation |
Similar to cDNA clone:J033010C22, full insert sequence. (Os12t04 81100-01) |
| Parent gene strand | - |
| Alternative splicing | Os12g0481100_circ_g.1 |
| Support reads | 2 |
| Tissues | leaf |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | Os12t0481100-01:9 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.103289534 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
17691614-17687960(+) 17691625-17687840(-) |
| Potential amino acid sequence |
MSGIDLKATSCTFVASISAFLNILSSLSS*(+) MPDIVVATPGRIIDHLRNSLSVGLEDLAILILDEADRLLELGFSAEIQELIRMCPRRRQTMLFS ATMTEEINELVTLSLNKPVRLEADPSLKRPATLTEEVVRIRRAREANQEAVLLALCLKTFKDKV IIFSGTKHSAHRLKIIFGLSGMKAAELHGNLTQAQRLEALELFKKQEVDFLIATDVAARGIDIV GVRTVINFSCPRDARTYLHRVGRTARAGREGYAVTFVTDDDRSLLKAIAKKAGSQLKSRIVAEK PVAECAKLIEELEDQISTIIQEEREERILRKAEMEATKVQEVALRSMPDIVVATPGRIIDHLRN SLSVGLEDLAILILDEADRLLELGFSAEIQELIRMCPRRRQTMLFSATMTEEINELVTLSLNKP VRLEADPSLKRPATLTEEVVRIRRAREANQEAVLLALCLKTFKDKVIIFSGTKHSAHRLKIIFG LSGMKAAELHGNLTQAQRLEALELFKKQEVDFLIATDVAARGIDIVGVRTVINFSCPRDARTYL HRVGRTARAGREGYAVTFVTDDDRSLLKAIAKKAGSQLKSRIVAEKPVAECAKLIEELEDQIST IIQEEREERILRKAEMEATKVQEVALRSMPDIVVATPGRIIDHLRNSLSVGLEDLAILILDEAD RLLELGFSAEIQELIRMCPRRRQTMLFSATMTEEINELVTLSLNKPVRLEADPSLKRPATLTEE VVRIRRAREANQEAVLLALCLKTFKDKVIIFSGTKHSAHRLKIIFGLSGMKAAELHGNLTQAQR LEALELFKKQEVDFLIATDVAARGIDIVGVRTVINFSCPRDARTYLHRVGRTARAGREGYAVTF VTDDDRSLLKAIAKKAGSQLKSRIVAEKPVAECAKLIEELEDQISTIIQEEREERILRKAEMEA TKVQEVALRSMPDIVVATPGRIIDHLRNSLSVGLEDLAILILDEADRLLELGFSAEIQELIRMC PRRRQTMLFSATMTEEINELVTLSLNKPVRLEADPSLKRPATLTEEVVRIRRAREANQEAVLLA LCLKTFKDKVIIFSGTKHSAHRLKIIFGLSGMKAAELHGNLTQAQRLEALELFKKQEVDFLIAT DVAARGIDIVGVRTVINFSCPRDARTYLHRVGRTARAGREGYAVTFVTDDDRSLLKAIAKKAGS QLKSRIVAEKPVAECAKLIEELEDQISTIIQEEREERILRKAEMEATK(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Lu et al., 2015 |