Detail information of ENSRNA049476493_circ_ig.24


General Information
CircRNA Name ENSRNA049476493_circ_ig.24
ID in PlantcircBase osa_circ_038224
Alias NA
Organism Oryza sativa
Position chr9: 7604-7938  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method NA
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing EPlOSAG00000008552_circ_g.1 EPlOSAG00000008552_circ_ag.1 ENSRNA049476493_circ_ig.1 ENSRNA049476493_circ_ig.2 ENSRNA049476493_circ_ig.3 ENSRNA049476493_circ_ig.4 ENSRNA049476493_circ_ig.5 ENSRNA049476493_circ_ig.6 ENSRNA049476493_circ_ig.7 ENSRNA049476493_circ_ig.8 ENSRNA049476493_circ_ig.9 ENSRNA049476493_circ_ig.10 ENSRNA049476493_circ_ig.11 ENSRNA049476493_circ_ig.12 ENSRNA049476493_circ_ig.13 ENSRNA049476493_circ_ig.14 ENSRNA049476493_circ_ig.15 ENSRNA049476493_circ_ig.16 ENSRNA049476493_circ_ig.17 ENSRNA049476493_circ_ig.18 ENSRNA049476493_circ_ig.19 ENSRNA049476493_circ_ig.20 ENSRNA049476493_circ_ig.21 ENSRNA049476493_circ_ig.22 ENSRNA049476493_circ_ig.23 ENSRNA049476493_circ_ig.25 ENSRNA049476493_circ_ig.26 ENSRNA049476493_circ_ig.27 ENSRNA049476493_circ_ig.28 ENSRNA049476493_circ_ig.29 ENSRNA049476493_circ_ig.30 ENSRNA049476493_circ_ig.31 ENSRNA049476493_circ_ig.32 ENSRNA049476493_circ_ig.33 ENSRNA049476493_circ_ig.34 EPlOSAG00000023741_circ_ig.1 EPlOSAG00000023741_circ_ig.2 EPlOSAG00000023741_circ_ig.3 EPlOSAG00000023741_circ_ig.4 EPlOSAG00000023741_circ_ig.5 EPlOSAG00000023741_circ_ig.6 EPlOSAG00000023741_circ_ig.7 EPlOSAG00000023741_circ_ig.8 EPlOSAG00000023741_circ_ig.9 EPlOSAG00000023741_circ_ig.10 EPlOSAG00000023741_circ_ig.11 EPlOSAG00000023741_circ_ig.12 EPlOSAG00000023741_circ_ig.13 EPlOSAG00000023741_circ_ig.14 EPlOSAG00000023741_circ_ig.15 EPlOSAG00000023741_circ_ig.16 EPlOSAG00000023741_circ_ig.17 EPlOSAG00000023741_circ_ig.18 EPlOSAG00000023741_circ_ig.19 EPlOSAG00000023741_circ_ig.20 EPlOSAG00000019921_circ_g.1 EPlOSAG00000019921_circ_g.2 EPlOSAG00000008551_circ_ag.1 EPlOSAG00000019921_circ_g.2 EPlOSAG00000008551_circ_ag.3 ENSRNA049476498_circ_ig.1 ENSRNA049476498_circ_ig.2 ENSRNA049476498_circ_ig.3 ENSRNA049476498_circ_ig.4 ENSRNA049476498_circ_ig.5 ENSRNA049476498_circ_ig.6 ENSRNA049476498_circ_ig.7 ENSRNA049476498_circ_ig.8 ENSRNA049476498_circ_ig.9 ENSRNA049476498_circ_ig.10 ENSRNA049476498_circ_ig.11 ENSRNA049476498_circ_ig.12 ENSRNA049476498_circ_ig.13 ENSRNA049476498_circ_ig.14 ENSRNA049476498_circ_ig.15 ENSRNA049476498_circ_ig.16 ENSRNA049476498_circ_ig.17 ENSRNA049476498_circ_ig.18 ENSRNA049476498_circ_ig.19 ENSRNA049476498_circ_ig.20 ENSRNA049476498_circ_ig.21 ENSRNA049476498_circ_ig.22 ENSRNA049476498_circ_ig.23 EPlOSAG00000023740_circ_ig.1 EPlOSAG00000023740_circ_ig.2 EPlOSAG00000023740_circ_ig.3 EPlOSAG00000023740_circ_ig.4 EPlOSAG00000023740_circ_ig.5 EPlOSAG00000023740_circ_ig.6 EPlOSAG00000023740_circ_ig.7 EPlOSAG00000023740_circ_ig.8 EPlOSAG00000023740_circ_ig.9 EPlOSAG00000023740_circ_ig.10 EPlOSAG00000023740_circ_ig.11 EPlOSAG00000023740_circ_ig.12 EPlOSAG00000023740_circ_ig.13 EPlOSAG00000023740_circ_ig.14 EPlOSAG00000008519_circ_g.1 EPlOSAG00000008519_circ_g.2 EPlOSAG00000008550_circ_ag.1 ENSRNA049476502_circ_ig.1 ENSRNA049476502_circ_ig.2 ENSRNA049476502_circ_ig.3 ENSRNA049476502_circ_ig.4 ENSRNA049476502_circ_ig.5 ENSRNA049476502_circ_ig.6 ENSRNA049476502_circ_ig.7 ENSRNA049476502_circ_ig.8 ENSRNA049476502_circ_ig.9 ENSRNA049476502_circ_ig.10 ENSRNA049476502_circ_ig.11 ENSRNA049476502_circ_ig.12 ENSRNA049476502_circ_ig.13 ENSRNA049476502_circ_ig.14 ENSRNA049476502_circ_ig.15 ENSRNA049476502_circ_ig.16 ENSRNA049476502_circ_ig.17 ENSRNA049476502_circ_ig.18 ENSRNA049476502_circ_ig.19 EPlOSAG00000023739_circ_igg.1 EPlOSAG00000023739_circ_ig.1 EPlOSAG00000023739_circ_ig.2 EPlOSAG00000023739_circ_ig.3 EPlOSAG00000023739_circ_ig.4 EPlOSAG00000023739_circ_ig.5 EPlOSAG00000023739_circ_ig.6 EPlOSAG00000023739_circ_ig.7 EPlOSAG00000023739_circ_ig.8 EPlOSAG00000023739_circ_ig.9 EPlOSAG00000023739_circ_ig.10 EPlOSAG00000023739_circ_ig.11 EPlOSAG00000023739_circ_ig.12 EPlOSAG00000019899_circ_igg.1 EPlOSAG00000008518_circ_g.1 EPlOSAG00000008518_circ_g.2 EPlOSAG00000008518_circ_g.3 EPlOSAG00000008549_circ_ag.1 ENSRNA049476508_circ_ig.1 ENSRNA049476508_circ_ig.2 ENSRNA049476508_circ_ig.3 ENSRNA049476508_circ_ig.4 ENSRNA049476508_circ_ig.5 ENSRNA049476508_circ_ig.6 ENSRNA049476508_circ_ig.7 ENSRNA049476508_circ_ig.8 ENSRNA049476508_circ_ig.9 ENSRNA049476508_circ_ig.10 ENSRNA049476508_circ_ig.11 ENSRNA049476508_circ_ig.12 ENSRNA049476508_circ_ig.13 ENSRNA049476508_circ_ig.14 ENSRNA049476508_circ_ig.15 ENSRNA049476508_circ_ig.16 ENSRNA049476508_circ_ig.17 ENSRNA049476508_circ_ig.18 ENSRNA049476508_circ_ig.19 ENSRNA049476508_circ_ig.20 EPlOSAG00000023738_circ_ig.1 EPlOSAG00000023738_circ_ig.2 EPlOSAG00000023738_circ_ig.3 EPlOSAG00000023738_circ_ig.4 EPlOSAG00000023738_circ_ig.5 EPlOSAG00000023738_circ_ig.6 EPlOSAG00000023738_circ_ig.7 EPlOSAG00000023738_circ_ig.8 EPlOSAG00000023738_circ_ig.9 EPlOSAG00000023738_circ_ig.10 EPlOSAG00000023738_circ_ig.11 EPlOSAG00000023738_circ_ig.12 EPlOSAG00000023738_circ_ig.13 EPlOSAG00000023738_circ_ig.14 EPlOSAG00000023738_circ_ig.15 EPlOSAG00000023738_circ_ig.16 EPlOSAG00000023738_circ_ig.17 ENSRNA049476452_circ_g.1 ENSRNA049476452_circ_g.2 ENSRNA049476452_circ_g.3 ENSRNA049476452_circ_g.4
Support reads NA
Tissues root
Exon boundary   No-No
Splicing signals   CC-CC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    Yes
PCR primers for FL    F: GGGCGGCTTGCTGAGTATGA
R: CAAGTGCCCCGACCTCAACC
Sequences
Splice junction sequence   CCGTCCACGCCCGGTCGTACTCATAACCGCATCAGGTCTCCAAGGTGAACAGCCTCTGGCCAAT
GGAACAATGTAGGCAAGGGAAGTCGGCAAAACGGATccgaaagggaatcgggttaagatttccc
gagccgggacgtggcggttgacggcgacgttaggaagtccggagacgccggcgggggcctcggg
aagagtta
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 335
Transcript exons: 7604-7938
CCGAAAGGGAATCGGGTTAAGATTTCCCGAGCCGGGACGTGGCGGTTGACGGCGACGTTAGGAA
GTCCGGAGACGCCGGCGGGGGCCTCGGGAAGAGTTATCTTTTCTGCTTAACGGCCCGCCAACCC
TGGAAACGGTTCAGCCGGAGGTAGGGTCCAGCGGCCGGAAGAGCACCGCACGTCGCGCGGTGTC
CGGTGCGCCCCCGGCGGCCCTTGAAAATCCGGAGGACCGAGTACCGTCCACGCCCGGTCGTACT
CATAACCGCATCAGGTCTCCAAGGTGAACAGCCTCTGGCCAATGGAACAATGTAGGCAAGGGAA
GTCGGCAAAACGGAT

Genomic sequence CCGAAAGGGAATCGGGTTAAGATTTCCCGAGCCGGGACGTGGCGGTTGACGGCGACGTTAGGAA
GTCCGGAGACGCCGGCGGGGGCCTCGGGAAGAGTTATCTTTTCTGCTTAACGGCCCGCCAACCC
TGGAAACGGTTCAGCCGGAGGTAGGGTCCAGCGGCCGGAAGAGCACCGCACGTCGCGCGGTGTC
CGGTGCGCCCCCGGCGGCCCTTGAAAATCCGGAGGACCGAGTACCGTCCACGCCCGGTCGTACT
CATAACCGCATCAGGTCTCCAAGGTGAACAGCCTCTGGCCAATGGAACAATGTAGGCAAGGGAA
GTCGGCAAAACGGAT
Conservation Information
Conserved circRNAs ath_circ_025760 ath_circ_025752 ath_circ_025746 ath_circ_025743
ath_circ_025751 ath_circ_025741
PMCS 1.226635284
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017