Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d039160_circ_g.3 |
ID in PlantcircBase | zma_circ_009193 |
Alias | zma_circ_0002441 |
Organism | Zea mays |
Position | chr6: 171422218-171429257 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d039160 |
Parent gene annotation |
TATA-binding protein-associated factor BTAF1 |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d039160_T019:4 Zm00001d039160_T023:4 Zm00001d039160_T033:4 Zm00001d039160_T007:4 Zm00001d039160_T012:2 Zm00001d039160_T035:4 Zm00001d039160_T028:4 Zm00001d039160_T002:4 Zm00001d039160_T017:4 Zm00001d039160_T020:4 Zm00001d039160_T032:4 Zm00001d039160_T005:4 Zm00001d039160_T006:4 Zm00001d039160_T022:4 Zm00001d039160_T027:4 Zm00001d039160_T014:3 Zm00001d039160_T011:2 Zm00001d039160_T030:4 Zm00001d039160_T016:4 Zm00001d039160_T018:4 Zm00001d039160_T004:3 Zm00001d039160_T034:4 Zm00001d039160_T036:4 Zm00001d039160_T015:4 Zm00001d039160_T008:4 Zm00001d039160_T021:4 Zm00001d039160_T013:3 Zm00001d039160_T025:1 Zm00001d039160_T026:3 Zm00001d039160_T031:4 Zm00001d039160_T001:4 Zm00001d039160_T029:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.15335351 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
171429124-171429218(-) |
Potential amino acid sequence |
MAQNSSRLHRLLTLLDTGSTQATRFAAARQIGEIAKSHPQELNSLLKKVSQYIRSKNWDTRVAA AHAIGAIAENVKHTSLKDLYASVQAEKHASGFSDGSDDAGSALPRTDSAATSDLAFGSFDIGRV LEFGSPLLASGGQSWCALLLHYMHVE*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |