Detail information of Csa3G127830_circ_g.1


General Information
CircRNA Name Csa3G127830_circ_g.1
ID in PlantcircBase csa_circ_001524
Alias Chr3:8160742_8164786
Organism Cucumis sativus
Position chrChr3: 8160742-8164786  JBrowse»
Reference genome Cucumis sativus v1.5
Type   e-circRNA
Identification method CIRI2
Parent gene Csa3G127830
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues leaf,root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Csa3G127830.1:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTAGAAAAGAAAAAAAAAAAACCATGCTTAATACCTCCTTGGTGAACAATCCACCAACAGCCGA
CAATCCCAAAAGCACATCAGGTTTCACTTGTTGCACcttgctaaattttcggagttctcgagca
tcaacgccgcggtatccttctacaagatcctcttctatggcttccataataacagctgctgcaa
tttccttt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTGCTAAATTTTCGGAGTTCTCGAGCATCAACGCCGCGGTATCCTTCTACAAGATCCTCTTCT
ATGGCTTCCATAATAACAGCTGCTGCAATTTCCTTTGTAATATCACGGATGCTACAAACGAAAA
CATGGTAATGAAACTTCTCACTTTTTCATCTCAATGAAATCAAAAAGAAGTATTTGTTTACACA
TCAAATAAAGATGACTTTACCTAGAAATTGATGGATAAATAATGCCTTCGTGAACTTCATCTTC
AGTCATATATGCAGCCAGGCTGTTTTGTTACAAATGGAAAGACAAAATAATCATTATTGTAATG
TAAGATGTTGTGTTAGTAATTTAAGAAGAAGGTTCAGAAGATAATATCTTGTAGTCGGTATTCT
TCATACATTGTTATATAGTATGATGTGTAACGAGTATGCTCTAAATTAGAACATGAGTAGAAAT
TGAATAAACTATTAAATTAAACCTAAATTCACTTCATAAATTAAACTTTCATCTAAAATTACTT
TAAGTGCATGAACATGCAACTCTCAATTGGCTGATATTCCGATTCAGTTGTTGAGATAACATGG
TTTACTCAACTCTCCACTGCCAGCAAACATGATAAATGCCTCATACCCACATACACCAAAATGT
GAAAAGGTGCTACCATGTCCAATCCTATCCGAGAGTTGAAGGAATAAAACGGTTTCAAAATGAT
TAAGAAAATGGGAAGTTGTCAAATTTAGATAGGCATTCGCATCTTTCATCTCCCACTAAAAAAA
ACCAAGTTCCTATATTAGATCTTTGGATACGGTCATAAAATCCTAGCCCCCATAGGCCATTTGG
TTCTTATGAAGTTATCGATAGGCAAATCAAAAAAATATCAATGTCGAAATTGCTTTAGCTTTCA
TGCAAAGCTCTCTCTTGAGGGTTTCTTGTGCCACTTGAATCTCTTATTCGCTTGGATTCTCAAT
TTCCATGGGAGTTGGAAGATATTCTATTCAAATACACAAATAAGAGACATTCCTGTGGTGATGA
AGTAGCAGACCCAAAGAATGTAACACAACTCAGAAAAGATTTAGAACATCTCAGAAGAAGCTTC
CCTAAGAAAGTAAGGTACTATACAAACAGAGGATCACCTAGGATCTTGACTCTTAAGGGTTCCC
ACATGTAGTGGAATTTCACATGAAAAATATGGCAATAGACAAAGATGGAAATTTACATCCCAGT
GCAACTATACCAGCTCAGGAAGTCCATCGGTTTCACGACAAAATGTAAGTCCTTAATTTCCAAG
TATAGAGAATAGTGGAGATATCAAAATTTGGAAGATCCATGTTAAATATAGTTCAACTGATTAA
GAAATTACATCTTCAAAATTCCTACCTGGCATGCTGTAGAACTAAAAAATAAACTTTTTGGAGT
GGGGATGGGAGGGAGTGAAACAAAAGGTTGATAAATAGTCGGCTATTTTCATTTAGTAGAGTTC
CCCTTTTGAGATCTCAGAATCCTAAAGTGTGTGTTTATAAAATCTTTCAAATTTTTATGAAAGT
GAAGATCGATATTCCCAATCAACTATTAGTAAAAGGTAATTTAGACATATCTCGATTTGATGGG
GTTGTTAAACAAAAGTATATGAGGAAAGTGAATTTTCATTTGAACATTCATCATAGGGAGTTGA
GAAATATCTGTCCATGGTGGTCCACTTCATGTTTAGAAAATTGAAAACGTGTTAATAGTTTGTT
TTCAACAAAACCCTTACCCCCATGGACTTTGGCAGAGAGGTGATCTATTGGAAGCAAAAATATT
TTTCCCTATACGTTAGAAAATATTCCTACTAAAATTGTTTTGTGCTCAGTGTCATTTGTACAAG
GCTGAAAATTCTGCGACTCAAATGCTATTAGATCTAGAGTTGAAGAAAGGATTCGCTTTAAGAA
AACTGACAAACTATTTAAGAAATATATGCGGGCTCTTGTATTAGCTCATTTAAGCTCATTTAAG
CTCAAATACTCTAACCTCAAATATAAGCTCATTTAAGAATGTTATTTTAACTCCATTCTTAGAC
TAGGGTTGGGAGCATTTCTATGTGGATCACACTAATCAGTGAAAATTTTCTTTTAATGCAGAGT
ACACAAAATTCCTTTTCCAGTCAACAAGTTTTCTCTAGCTACTGCACCTAGCAACAGCAGAACG
TTACACTGCAATTTTGCAAAAGGATTAAATTCCATCTATCCAAAATTTTAGCCATTTTTCCTCT
GAAATTTGTATCAACAAAATTTTGATCTACATAAGCTTGAAAGTGCAGAAGCCTTACCACTCAG
CAGCAGCCTGCAGCATGCCATCGGATACAATAGGAGAACCAGATAGAAGTGTACCGAGCCCAAT
ACTGCACCAGCATGCATCCGCACATATTATAAACCTCAAATATCATAAAATATTATCTTTATCG
CCATTAGAGTGTGCAACTTGGAAAACTAACCCTGGGAAAAGATACATGTTGTTTCCTTGGTTGC
AGTGGCCAATATGACCATTTCCTGAAGAATAGTGATTATATTAAAGGCTGTCTCTAGCATGGAA
CTAAGCAAAATAATTTCATGATTGGCAAACAAAAAAGTCAAATCAAGAAAGGACAATTACCAAA
TTATAGTTACCACTGACATTATTATTGCAATTATTACGAAGATAATATAACGCACTAAACTAAT
CCTTGGTTTGTTTTCACTTTATTTTAAAGAAATTACACCGAGAAGAAACTTTTTTTAGAAAAGA
ATCTCAGATTATGGATACAAAATGAAAGAAGGTAGGTACTGGCTGCTCAAAGCCTCAAATTTTG
TTGAGAAAAAAACACGTTCCCATTTCCATTAAACACTCAAAGCTATGTCGTTAATTATAAGTCC
AAATAATCTGCAAAAACTTAGATAGGGATTTTTAAAACGGATGTTATCAGAAACAGGATTTCAA
GCTAAGTAGACGACTAAAAGTGCCTCCCACACTCGCTAGAAGTTTCAAGAACATAATTTTGCGC
TGAAAGCATCGAAAAATTTCCTGTATTCTTGCTGGCTGCTAGTGAACTTTCTACTTAATTTTCC
AACACCTTTAAATGGAAAGATCCGAGAATTATATTCTTGAGTTTATTATTTTTTTGCAGAAGCA
TCCCTCTTCCTTGTATTAACTTTAAAATCTTAAAACAAACAGAAGTGAAAAGCATAAAAGCATA
TGACGTATTTATTTCACGTACCAAAATCAACATCCTTGAATGGGCTTCCACTCGCAAATATGAC
GTTTTCACCCAAGATTGAGAATGCTTCTTCAGGAGTGCACTCGGCTACATGAGATAAATAATAC
ATAATGTAAGAATTACCAAACAACTGAAGGGCAAATTTGCGACCCACGCGCAGCAAGCGAAATT
CATAGATTGTACAACTGTACCATTTGTTGTAGGATTAGACATGGCGAAAATCGCTGGTCTTGTA
GCTGTTGATCCTTTAAGAGCCTCTAATACCTAAACACATGTGTATAAGAAGATATGAGTAAATT
GCACAAGTTTCACATTTGGGTGATAGCTAAACAATTCAGTTACATTTTCATTCATTTAGATCAA
TCCAAGTCTACATCATTTTTATTTACTTATTTTCTCACCGACTTTGTTTCTGTTTTCAGCCATC
TTTCTTTTTCTCTCTTTTTCTTTTTCTTCTCTTTTTCTTTCTTTTTTTTTTTATTTATTTGTCT
CATCATAGAAGCTCCCATAGAATATGACCCATTTTTGCATGGAGCAAAATGCAAAAAATATAGA
ATGGAAATTTTCTAATTTTCCTTTTCCCTCTTTCTCCATCCATAGTATAGTGTCTGAATCAGTA
CATACAACTATAAAGCACAAATAACTGAAAGAACACTCAGTTTGTTATTTCCTAAAAAGAAAAT
ATTAAAGAGCCAAGTGAATAGTGACTACAAATAATATTGCATTAGAAAAGAAAAAAAAAAAACC
ATGCTTAATACCTCCTTGGTGAACAATCCACCAACAGCCGACAATCCCAAAAGCACATCAGGTT
TCACTTGTTGCAC
Conservation Information
Conserved circRNAs NA
PMCS 0.098255692
Functional Information
Coding potential Y
Potential coding position 8164177-8160744(-)
Potential amino acid sequence MSNPTTNAECTPEEAFSILGENVIFASGSPFKDVDFGNGHIGHCNQGNNMYLFPGIGLGTLLSG
SPIVSDGMLQAAAECLAAYMTEDEVHEGIIYPSISSIRDITKEIAAAVIMEAIEEDLVEGYRGV
DARELRKFSKVQQVKPDVLLGLSAVGGLFTKEVLEALKGSTATRPAIFAMSNPTTNAECTPEEA
FSILGENVIFASGSPFKDVDFGNGHIGHCNQGNNMYLFPGIGLGTLLSGSPIVSDGMLQAAAEC
LAAYMTEDEVHEGIIYPSISSIRDITKEIAAAVIMEAIEEDLVEGYRGVDARELRKFSKVQQVK
PDVLLGLSAVGGLFTKEVLEALKGSTATRPAIFAMSNPTTNAECTPEEAFSILGENVIFASGSP
FKDVDFGNGHIGHCNQGNNMYLFPGIGLGTLLSGSPIVSDGMLQAAAECLAAYMTEDEVHEGII
YPSISSIRDITKEIAAAVIMEAIEEDLVEGYRGVDARELRKFSKVQQVKPDVLLGLSAVGGLFT
KEVLEALKGSTATRPAIFAMSNPTTNAECTPEEAFSILGENVIFASGSPFKDVDFGNGHIGHCN
QGNNMYLFPGIGLGTLLSGSPIVSDGMLQAAAECLAAYMTEDEVHEGIIYPSISSIRDITKEIA
AAVIMEAIEEDLVEGYRGVDARELRKFSK
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to salt stress in root
Other Information
References Zhu et al., 2019