Detail information of Os01g0637300_circ_ig.1


General Information
CircRNA Name Os01g0637300_circ_ig.1
ID in PlantcircBase osa_circ_002843
Alias Os_ciR5937
Organism Oryza sativa
Position chr1: 25579557-25580088  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os01g0636600_circ_ag.1 Os01g0636600_circ_ag.2 Os01g0636600_circ_g.1 Os01g0636600_circ_ag.2 Os01g0636600_circ_ag.3 Os01g0636600_circ_ag.4 Os01g0636600_circ_ag.5 Os01g0636600_circ_ag.6 Os01g0636700_circ_g.1 Os01g0636700_circ_g.2 Os01g0636700_circ_g.3 Os01g0636700_circ_g.4 Os01g0636700_circ_g.5 Os01g0636700_circ_g.6
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGCGCTCGCCCGCTTGCCGCCGCCGCGCTCTCGCCCGCTTGCCGCCACCGCTCCACTCCGCTTC
GCCGGCCGCCGCTCTCGCACGACGGCATCGCCAACGtcgagagtcgagatagctcgtgacttgg
tgaagcttggacgacgacggcgacctcaggatcagcttggcgacggcggatggcggcggcttca
cggcggcg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TCGAGAGTCGAGATAGCTCGTGACTTGGTGAAGCTTGGACGACGACGGCGACCTCAGGATCAGC
TTGGCGACGGCGGATGGCGGCGGCTTCACGGCGGCGGCCCACTCCGATCGATGCGCTGCTAAAA
GAAGATGTCCAGGGGCTTAGCAATGTCCCCAGGAAGGTGTATTCACGAGGAATCGAGTTCTAGC
TCACCAAGGAAAGAGAAATCAACGGCGAGGACTGGCGGCCGGAGAGGAGGAAGATGGCGTCGAT
CTCGCGGATGGAGACTCCTCAGCTTCGCGTGCTAAGGCTTCTGAACCGTGCTGATGTGGCGACG
ACGCTAGTCAAGTGGCTCGGCAGGATTCGCACTGTGCGTCGAGAACGTGGCTCGTGCGGCGACA
ACGCCGTCAGAGGCCGGGAGCGTGACTCGAGGCTTCGCCGGAGTGCCGCGCGCTCGCCCGCTTG
CCGCCGCCGCGCTCTCGCCCGCTTGCCGCCACCGCTCCACTCCGCTTCGCCGGCCGCCGCTCTC
GCACGACGGCATCGCCAACG
Conservation Information
Conserved circRNAs osi_circ_002237* osi_circ_010411
PMCS 0.316692137
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015