Detail information of Zm00001d046221_circ_g.1


General Information
CircRNA Name Zm00001d046221_circ_g.1
ID in PlantcircBase zma_circ_005877
Alias tassel_test_circ_001225
Organism Zea mays
Position chr9: 72873503-72873692  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method find_circ
Parent gene Zm00001d046221
Parent gene annotation ATP/GTP-binding protein family
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues tassel
Exon boundary   No-No
Splicing signals   TC-AG
Number of exons covered Zm00001d046221_T035:1
Zm00001d046221_T051:1
Zm00001d046221_T038:1
Zm00001d046221_T042:1
Zm00001d046221_T032:1
Zm00001d046221_T016:1
Zm00001d046221_T033:1
Zm00001d046221_T040:1
Zm00001d046221_T021:1
Zm00001d046221_T046:1
Zm00001d046221_T002:1
Zm00001d046221_T039:1
Zm00001d046221_T045:1
Zm00001d046221_T050:1
Zm00001d046221_T043:1
Zm00001d046221_T014:1
Zm00001d046221_T037:1
Zm00001d046221_T044:1
Zm00001d046221_T036:1
Zm00001d046221_T053:1
Zm00001d046221_T041:1
Zm00001d046221_T052:1
Zm00001d046221_T034:1
Zm00001d046221_T047:1
Zm00001d046221_T018:1
Zm00001d046221_T017:1
Zm00001d046221_T030:1
Zm00001d046221_T031:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGAGGACAAACTGTCTGTGGCAGAGAAAGGAGATTCTGTGGAAGGTGGAGAAAAGGTAGTTAGT
AAGGAGGTTAAGCCAGCAAAAGATGAGGTGGccagaagtagcgacagcagatggtggaaataac
agaagttcaacacaacctgaagtaggaaatattactaatacccatgaaagagctgcttcaat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCAGAAGTAGCGACAGCAGATGGTGGAAATAACAGAAGTTCAACACAACCTGAAGTAGGAAATA
TTACTAATACCCATGAAAGAGCTGCTTCAATGGAGGACAAACTGTCTGTGGCAGAGAAAGGAGA
TTCTGTGGAAGGTGGAGAAAAGGTAGTTAGTAAGGAGGTTAAGCCAGCAAAAGATGAGGTGG
Conservation Information
Conserved circRNAs NA
PMCS 0.089392463
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Tang et al., 2018