Detail information of Os01g0673500_circ_g.1


General Information
CircRNA Name Os01g0673500_circ_g.1
ID in PlantcircBase osa_circ_003180
Alias Os01circ19848/Os_ciR3264
Organism Oryza sativa
Position chr1: 27660331-27663672  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method SMALT, Segemehl, find_circ
Parent gene Os01g0673500
Parent gene annotation Similar to predicted protein. (Os01t0673500-01);Similar to Katan
in p60 ATPase-containing subunit A1 (EC 3.6.4.3) (Katanin p60 su
bunit A1) (p60 katanin). Splice isoform 2. (Os01t0673500-02);Sim
ilar to predicted protein. (Os01t0673500-03)
Parent gene strand -
Alternative splicing Os01g0673500_circ_g.2 Os01g0673500_circ_g.3 Os01g0673500_circ_g.4 Os01g0673500_circ_g.5
Support reads 2/3
Tissues leaf and panicle/root
Exon boundary   No-Yes
Splicing signals   CT-AC
Number of exons covered Os01t0673500-01:5
Os01t0673500-02:5
Os01t0673500-03:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAAGTAATGCCATACCACGCCATTTACTGACAATTGATGAGGCTGAAATATTGAAGAAGGTTGT
TTTGCACTCAGTAGCCACAGCTTTTGCTAGCATTGTctttagctgaggacatgactgccatagt
cttgattgaatttttcgtatctatgtacatgaagatgagcagatggccgtgtattccttagtgc
aagctcaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTAGCTGAGGACATGACTGCCATAGTCTTGATTGAATTTTTCGTATCTATGTACATGAAGAT
GAGCAGATGGCCGTGTATTCCTTAGTGCAAGCTCAATGTCTTCTGTCGTTACTGGACCAACTTC
AGGCAACTCTGCAACATTTCCCCCCAAAATAAGTCCTACTGTATCACTGACTTCGATAATGTGA
GCAGCAGGATCATTTTTTGTGCAGTGAAATTATAGCATACTTTTATGTGGCATTGGAGGCGCCA
TGGAGGAATATAAATTCTTCTTTTGTTGCTACTGTTTCTTTATACGGGTTCGGTTTTTTCAGCT
ACTGAATGCAAACATACAAGTCTACAGAACTTAAACTCACTGAAGTTGTAATGAGTACTAATTA
CTAAACAAAGAAAATTAAGTCTATAAGTTCCCTGGTAGGCACATTATCTTTGTTCTTGTACTTG
TACACACTAAAGGTGAGTATGAGTTGCTGGGGGTTTTTTTTTTTTTGACGCAAAAGGTAGAGAG
GCTCTACCTTATAACCATTGTATTAATGGTGAGTCAAAATGGAACAATGTCAAGAAACAGGAAA
AGGGGATAGAAATAAGGATGAAAAAAGGAAGAAAAAGGAAGAAGATAACAGAAAATTAAGTTGC
TGGGAAGTTAGGAAATCACAAGTTCAAGATATATCACGTACCATCCTCAGGCACTTCTTCTTGC
CTTCCTTCAAGAACCGACATTAACCTTCTAAGGGGTTGCATTGCCGCCTCCTTGCACACAAGGC
GTATATCAGAGCCTGAATATCCTTCAGTTTTCTCCACAAGAACATCATATGGGATATTCATTGT
GCCAGGAACAGATGGCAAGAGCTCTTCAAACATGGCATGTCTAGCTTCTTGCTCTGGTAAGGGA
ACAAGAATCTAATTGCAAGTTAAGGATGGATTTCCCTTTTTATGTGGAAAAATCAAGTGTGGTC
CTATATACAAACTCCAGTATCGCAATAAGAAAAGATACAAGAATCGAGATTGAATTCTTTAACA
GTTTTTAGTACAAACAATAACTTCAGTAAGAAGCCTATGATGTGTCAGTTACAACTACAAATAG
ATTTAAGGCAAGCATTGGAAATAGGCAACATTTACAACTACAAATAGATTTAAGGCAAGCATTG
GAAATAGGCTACATAAATGTTCATCATCAAACATTCTCTTTACTACATAATAAGAGAATCACTT
ATTCTCAATCTGAAATTCAAATCAGTAGTTCCTCACATAAGAAAATGATCTTTGGTATTGTTAC
TTCTGGTTAAACATATTTGAGATTTGAATTTTTTTTCATGGTCTTCAAGGTGCGATTGTTACCA
TGATTTTATTAGAATAGGTTTATAAAATCTAATAAGTTTATGAGATGTTGGAAGTACTTTAAAA
CAAATCAAAGCATATCATATTTATGTTTTTGAACTAAGTTTTTAAAGTTCATCGATAGTCAAGG
TTTCAAAAGTTTAACCAGATTTTGTCCAAAACATCAAGCATTTGCGGACAAAACAAGGGAGTTT
ACCTAATAGCAAAACTGGCAATTACGGAGTAGTATTTAGGAGCACTCGTGAACAAAGAAATTAC
AAGATGGTTTGAGAAAAAAGGATACACGTTTCTCCAAACGGCGCAACATTGCTGCATCCAGTTC
CCATGGCAAATTTGTGGCGGCTAGAACAAAAACGAGATCATCTGTCTTAGTTAACCCATCCATC
TGCAGCAACAAATTATCAGAATTCATGACTGCTTTTATCACCATGTGAATGAAATCACACAAGT
TCAGGATTATTATACATATCAATTTATGAAAGGTTTCATATACTAACAGAATCCTGTATGTTGA
GAACCACCAAGGGTCTTCCGGCTAGCTCCACAAGATGGTGGGCTAGACGACCTGGGTTCGAAGC
CTCACCCCTTCTAGTTATTTGATATTAGATCCTTCCCTAATATTCGCGTCCTTTTTAACAGAAT
CCCATATGCTGAGATATATGATATCTAAAGAGTTTGTTCTTTGTTAATTTTCCTCCATAGGGTT
ATGTTCACAATTTAGGGCTGAGAAACTCATACTACTTATGAAGCAGTGAAAGTTTCAGCATAAT
CACTTTACAAAGCCTCAAGAATGCTACCTGTATTAATAGCTCAGTCTTCAATCGCCGACTGGCT
TCATGTTCACTACGAGCTTCACCACGTTGGCTAATAATAGCATCAATCTCATCGAGAAAAATGG
TGGATGGTGCATGATGCCTTGCAAGCTCAAATAAGACTTTCACTAGTTTCTCCGAATCACCTGC
ACCGTTGTAACTATTAGGTAGGGAAAACTTACTAAAATATCGATAGAAATGGAGCAAGGACAGA
ATATCATGTATGGTAAGGATGTGAGTTAGAAGTTATAAGTTCGATCTAGTCAGGTACAGGTTCA
TCCATCCGTTATTAATAGCAAGAAGGAATTATATAGTTCCACATATCTGTTCTTCCAAATTGAT
GAATGAAAAGGATGAGGTGATTGTTCCACAAAGGTTAGTGCTGTTGGATATACAATGTTCCACA
AAATGTACAGGCGGAGTGAGGGTGGCAGAGGAGTATTAGGCTAGTAGGCTCTGGTGCAAATAGG
GAGCCAGTGGTCAGTGGGCAGTGGCCAACAATGGCTATGGAAGCCCTACACCATTGGGTGCCAT
AACATGGTATGCAAGGGTGAAGGAGAAGATTTGATGGTTTCATTAAGTCCAAAAGAAATGTGGC
ATATGCTAGGATCCATAGAATACTGTCATGCACAACAGTGATTATTGATATTTTTCAAGCTGCT
AGTACATGAGGCCAAAAGATAACTGCCTGTTAGGGGAATATAGAAAGAAGGAAATGAAAAAAAA
AAAAAGAATTATGAATGTTTCAGTCCTATTGGTGGCGCTTAAGTGAGTTTAAGGATACAGTTGA
GTAGTATCAATGAATAGTTAACTGTGGACCTCTTTAGTGCTGGAGAAACATGTATTAACTTTAT
AAAACTTGGAAGAGTAAATACTATCCAATGTAAATCTATAGAAATTTGCTAATACGGATTGCTT
TAAAAAATATATAAAGAGCAGATAGAAACACAAAAAAATAGTGCATGCATGTATCACATATCTA
CATGATTAGTTGGTCATACAAGCAATACAACATGACAAGAAGTAGAAACTACAACAACAATAGC
ATTAAAAGGGAAACAATGCAAATGCATCTCAGAACGCAAGCAAAAGTAATGCCATACCACGCCA
TTTACTGACAATTGATGAGGCTGAAATATTGAAGAAGGTTGTTTTGCACTCAGTAGCCACAGCT
TTTGCTAGCATTGT
Conservation Information
Conserved circRNAs osi_circ_002286*
PMCS 0.320545808
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015;Ye et al., 2015