Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os01g0673500_circ_g.1 |
ID in PlantcircBase | osa_circ_003180 |
Alias | Os01circ19848/Os_ciR3264 |
Organism | Oryza sativa |
Position | chr1: 27660331-27663672 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | ue-circRNA |
Identification method | SMALT, Segemehl, find_circ |
Parent gene | Os01g0673500 |
Parent gene annotation |
Similar to predicted protein. (Os01t0673500-01);Similar to Katan in p60 ATPase-containing subunit A1 (EC 3.6.4.3) (Katanin p60 su bunit A1) (p60 katanin). Splice isoform 2. (Os01t0673500-02);Sim ilar to predicted protein. (Os01t0673500-03) |
Parent gene strand | - |
Alternative splicing | Os01g0673500_circ_g.2 Os01g0673500_circ_g.3 Os01g0673500_circ_g.4 Os01g0673500_circ_g.5 |
Support reads | 2/3 |
Tissues | leaf and panicle/root |
Exon boundary | No-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os01t0673500-01:5 Os01t0673500-02:5 Os01t0673500-03:4 |
Conservation Information | |
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Conserved circRNAs | osi_circ_002286* |
PMCS | 0.320545808 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Lu et al., 2015;Ye et al., 2015 |