Plant Circular RNA Database

Detail information of Os10g0389900_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os10g0389900_circ_g.2
					
						ID in PlantcircBase
						osa_circ_006689
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr10: 12925581-12927260  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ui-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os10g0389900						
					
						Parent gene annotation
						
							Hypothetical protein. (Os10t0389900-00)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os10g0389900_circ_g.3 Os10g0389900_circ_g.4 						
					
						Support reads
						1
					
						Tissues
						shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os10t0389800-01:9
Os10t0389900-00:8
Os10t0389800-01:9

General Information
CircRNA Name	Os10g0389900_circ_g.2
ID in PlantcircBase	osa_circ_006689
Alias	NA
Organism	Oryza sativa
Position	chr10: 12925581-12927260 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ui-circRNA
Identification method	CIRCexplorer
Parent gene	Os10g0389900
Parent gene annotation	Hypothetical protein. (Os10t0389900-00)
Parent gene strand	+
Alternative splicing	Os10g0389900_circ_g.3 Os10g0389900_circ_g.4
Support reads	1
Tissues	shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os10t0389800-01:9 Os10t0389900-00:8 Os10t0389800-01:9

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CCCTGCCATGAGGCGCCACATGGGTCACCGCCATTCACCTGCCAACCGCGCAGCTGCCCCGGCG
AATTGAGGCTGGTGAATAGCGCATTGAGGACAGTAActttaacttcattggaagggtatgaatt
gaaaggctgtcgctgttcaacatgttcttgccttgtacctttgcgttttctctttatcaagaag
aatgctac

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTTTAACTTCATTGGAAGGGTATGAATTGAAAGGCTGTCGCTGTTCAACATGTTCTTGCCTTGT
ACCTTTGCGTTTTCTCTTTATCAAGAAGAATGCTACAACTGCTCCAATGACCAGTAGAGCTACG
ATAATTCCTGCTATAGCTCCAGCACGTAACCCTGAATTTCCACCAGAACTTGATGAGCTACCAC
TGCCATTGGAGTGTCTGCCTGGGCTTTTTTTACGGTTGCGTGATGGTGGAGGTGCTGTGAATGG
TGGTGGTGGTGGTGCCGGACCTGTGCTCCAAGAATTGCCATCGGTTCTGTTGAACATAACATTA
GTTCAAGATGCAGCCATCCAAAACATTAGGGAACTAAGACATAAGCAATACTTACTGAAGACTA
TTTATTTTCTTTAGCTCATTAGGAATCCAACCAGTAAAACGGTTGTTTCCCACATTTCTGCAAT
AAAGGAGGAAAAACTGGACTTAGTACAATATTGTGTGATATAACCGATTTATACCTTCAAAATG
ATTTGCTTACAAATTATCCAGGGGAAGATTAGCAAGGACATTGATTGATCCAGTAAATTGGTTG
TTCTGCAGATACCTGGTAAGATAGAACATAGGTTATAGGTATAAGAGAACTTATAAATTTATTA
TATTATTCAAAGTTCCTTCTTACAAAGTTTTCAGGCTTGACAGAGAAGTGAAACTTTGTGGGAG
ATCACCAGTAAGAGAATTTAAGGAGAGATCACTGTAGCAATGTACAGAAATATAGTAAGAGCAA
AGATACATCGTGACTTGTAAGAAATGCAAACAGAGAAGTTAGAAGAATTTTGTGTGCACATTGA
GATCAACCTAGAATACTTGTTTTAAGTAAGAGTACTCACAGTGTTGATAAACTTGGAAGGTTGG
AAAAGACATCTGTCATATTTCCTTGTAATTGGTTATGATTAAGGTTTCTGTATTCACAAAGAAA
ATCCAATTAACCCATAGAGTACAATATGAATTTCAAGGCAAATTTGTATTTGGGTCAAAAGGTA
CTCACAGATACTTAAGTTTAGGCATTGTGGAAATTGAGTATGGCACATTTCCAGCAAACTGGTT
CCCAGCAAGATTGCTGCAAATAAAAAATTCACTTAAATTATCGCCATAAATAACAAAGAACAAT
TAGATAGTATGTGTCAGTACAATTTTTTTCCCTAAAATAGATTATAAAATGGCAACATCTGAGG
AACTTACAGCCTCTCAAGCTTCTTATTTGGAAGATTGTATTGAATATTTTGGCCACCCCCAAGA
TTATTTTGGCTCATGTCACTGCATGGAATTATGATCAAGTTAATCACCAAGTGAACTCCCAAAC
AGAAAGAACTACTCCAAAAATTCCATTATCCAAACTCACAGCTCAACTAGGGACTCCATGGTGT
TCATATTGTAGGCCAGATTCCCCGAAAGCCCCAAGCTCGGCAATTTACTAGTAGAACCAGGAAG
AGAAAAACACATCAGAGAAAACAATAAATTGGGCTCACAAGCAAGAACATTGAATTATGCAACC
ACACTACCCACATTGCTGTGACTGATGATCCAGAGCAGGTGATGCCCTGCCATGAGGCGCCACA
TGGGTCACCGCCATTCACCTGCCAACCGCGCAGCTGCCCCGGCGAATTGAGGCTGGTGAATAGC
GCATTGAGGACAGTAA
						
					

			
		

Sequences
Splice junction sequence	CCCTGCCATGAGGCGCCACATGGGTCACCGCCATTCACCTGCCAACCGCGCAGCTGCCCCGGCG AATTGAGGCTGGTGAATAGCGCATTGAGGACAGTAActttaacttcattggaagggtatgaatt gaaaggctgtcgctgttcaacatgttcttgccttgtacctttgcgttttctctttatcaagaag aatgctac
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTTTAACTTCATTGGAAGGGTATGAATTGAAAGGCTGTCGCTGTTCAACATGTTCTTGCCTTGT ACCTTTGCGTTTTCTCTTTATCAAGAAGAATGCTACAACTGCTCCAATGACCAGTAGAGCTACG ATAATTCCTGCTATAGCTCCAGCACGTAACCCTGAATTTCCACCAGAACTTGATGAGCTACCAC TGCCATTGGAGTGTCTGCCTGGGCTTTTTTTACGGTTGCGTGATGGTGGAGGTGCTGTGAATGG TGGTGGTGGTGGTGCCGGACCTGTGCTCCAAGAATTGCCATCGGTTCTGTTGAACATAACATTA GTTCAAGATGCAGCCATCCAAAACATTAGGGAACTAAGACATAAGCAATACTTACTGAAGACTA TTTATTTTCTTTAGCTCATTAGGAATCCAACCAGTAAAACGGTTGTTTCCCACATTTCTGCAAT AAAGGAGGAAAAACTGGACTTAGTACAATATTGTGTGATATAACCGATTTATACCTTCAAAATG ATTTGCTTACAAATTATCCAGGGGAAGATTAGCAAGGACATTGATTGATCCAGTAAATTGGTTG TTCTGCAGATACCTGGTAAGATAGAACATAGGTTATAGGTATAAGAGAACTTATAAATTTATTA TATTATTCAAAGTTCCTTCTTACAAAGTTTTCAGGCTTGACAGAGAAGTGAAACTTTGTGGGAG ATCACCAGTAAGAGAATTTAAGGAGAGATCACTGTAGCAATGTACAGAAATATAGTAAGAGCAA AGATACATCGTGACTTGTAAGAAATGCAAACAGAGAAGTTAGAAGAATTTTGTGTGCACATTGA GATCAACCTAGAATACTTGTTTTAAGTAAGAGTACTCACAGTGTTGATAAACTTGGAAGGTTGG AAAAGACATCTGTCATATTTCCTTGTAATTGGTTATGATTAAGGTTTCTGTATTCACAAAGAAA ATCCAATTAACCCATAGAGTACAATATGAATTTCAAGGCAAATTTGTATTTGGGTCAAAAGGTA CTCACAGATACTTAAGTTTAGGCATTGTGGAAATTGAGTATGGCACATTTCCAGCAAACTGGTT CCCAGCAAGATTGCTGCAAATAAAAAATTCACTTAAATTATCGCCATAAATAACAAAGAACAAT TAGATAGTATGTGTCAGTACAATTTTTTTCCCTAAAATAGATTATAAAATGGCAACATCTGAGG AACTTACAGCCTCTCAAGCTTCTTATTTGGAAGATTGTATTGAATATTTTGGCCACCCCCAAGA TTATTTTGGCTCATGTCACTGCATGGAATTATGATCAAGTTAATCACCAAGTGAACTCCCAAAC AGAAAGAACTACTCCAAAAATTCCATTATCCAAACTCACAGCTCAACTAGGGACTCCATGGTGT TCATATTGTAGGCCAGATTCCCCGAAAGCCCCAAGCTCGGCAATTTACTAGTAGAACCAGGAAG AGAAAAACACATCAGAGAAAACAATAAATTGGGCTCACAAGCAAGAACATTGAATTATGCAACC ACACTACCCACATTGCTGTGACTGATGATCCAGAGCAGGTGATGCCCTGCCATGAGGCGCCACA TGGGTCACCGCCATTCACCTGCCAACCGCGCAGCTGCCCCGGCGAATTGAGGCTGGTGAATAGC GCATTGAGGACAGTAA

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_008376 						
					
						PMCS
						0.113515605

Conservation Information
Conserved circRNAs	osi_circ_008376
PMCS	0.113515605

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							12927159-12925955(+)
12925633-12927197(-)
12926994-12925583(-)
						
					

						Potential amino acid sequence
						
							MPCHEAPHGSPPFTCQPRSCPGELRLVNSALRTVTLTSLEGYELKGCRCSTCSCLVPLRFLFIK
KNATTAPMTSRATIIPAIAPARNPEFPPELDELPLPLECLPGLFLRLRDGGGAVNGGGGGAGPV
LQELPSV*(+)
MLNSDSLSIHTLPMKLKLLSSMRYSPASIRRGSCAVGR*(-)
MNTMESLVELDMSQNNLGGGQNIQYNLPNKKLERLNLAGNQFAGNVPYSISTMPKLKYLNLNHN
QLQGNMTDVFSNLPSLSTLDLSLNSLTGDLPQSFTSLSSLKTLYLQNNQFTGSINVLANLPLDN
LNVGNNRFTGWIPNELKKINSLQTDGNSWSTGPAPPPPPFTAPPPSRNRKKSPGRHSNGSGSSS
SSGGNSGLRAGAIAGIIVALLVIGAVVAFFLIKRKRKGTRQEHVEQRQPFNSYPSNEVKVTVLN
ALFTSLNSPGQLRGWQVNGGDPCGASWQGITCSGSSVTAIKLPSLGLSGNLAYNMNTMESLVEL
DMSQNNLGGGQNIQYNLPNKKLERLNLAGNQFAGNVPYSISTMPKLKYLNLNHNQLQGNMTDVF
SNLPSLSTLDLSLNSLTGDLPQSFTSLSSLKTLYLQNNQFTGSINVLANLPLDNLNVGNNRFTG
WIPNELKKINSLQTDGNSWSTGPAPPPPPFTAPPPSRNRKKSPGRHSNGSGSSSSSGGNSGLRA
GAIAGIIVALLVIGAVVAFFLIKRKRKGTRQEHVEQRQPFNSYPSNEVKVTVLNALFTSLNSPG
QLRGWQVNGGDPCGASWQGITCSGSSVTAIKLPSLGLSGNLAYNMNTMESLVELDMSQNNLGGG
QNIQYNLPNKKLERLNLAGNQFAGNVPYSISTMPKLKYLNLNHNQLQGNMTDVFSNLPSLSTLD
LSLNSLTGDLPQSFTSLSSLKTLYLQNNQFTGSINVLANLPLDNLNVGNNRFTGWIPNELKKIN
SLQTDGNSWSTGPAPPPPPFTAPPPSRNRKKSPGRHSNGSGSSSSSGGNSGLRAGAIAGIIVAL
LVIGAVVAFFLIKRKRKGTRQEHVEQRQPFNSYPSNEVKVTVLNALFTSLNSPGQLRGWQVNGG
DPCGASWQGITCSGSSVTAIKLPSLGLSGNLAYNMNTMESLVELDMSQNNLGGGQNIQYNLPNK
KLERLNLAGNQFAGNVPYSISTMPKLKYLNLNHNQLQGNMTDVFSNLPSLSTLDLSLNSLTGDL
PQSFTSLSSLKTLYLQNNQFTGSINVLANLPLDNLNVGNNRFTGWIPNELKKINSLQTDGNSWS
TGPAPPPPPFTAPPPSRNRKKSPGRHSNGSGSSSSSGGNSGLRAGAIAGIIVALLVIGAVVAFF
LIKRKRKGTRQEHVEQRQPFNSYPSNEVK(-)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	12927159-12925955(+) 12925633-12927197(-) 12926994-12925583(-)
Potential amino acid sequence	MPCHEAPHGSPPFTCQPRSCPGELRLVNSALRTVTLTSLEGYELKGCRCSTCSCLVPLRFLFIK KNATTAPMTSRATIIPAIAPARNPEFPPELDELPLPLECLPGLFLRLRDGGGAVNGGGGGAGPV LQELPSV(+) MLNSDSLSIHTLPMKLKLLSSMRYSPASIRRGSCAVGR(-) MNTMESLVELDMSQNNLGGGQNIQYNLPNKKLERLNLAGNQFAGNVPYSISTMPKLKYLNLNHN QLQGNMTDVFSNLPSLSTLDLSLNSLTGDLPQSFTSLSSLKTLYLQNNQFTGSINVLANLPLDN LNVGNNRFTGWIPNELKKINSLQTDGNSWSTGPAPPPPPFTAPPPSRNRKKSPGRHSNGSGSSS SSGGNSGLRAGAIAGIIVALLVIGAVVAFFLIKRKRKGTRQEHVEQRQPFNSYPSNEVKVTVLN ALFTSLNSPGQLRGWQVNGGDPCGASWQGITCSGSSVTAIKLPSLGLSGNLAYNMNTMESLVEL DMSQNNLGGGQNIQYNLPNKKLERLNLAGNQFAGNVPYSISTMPKLKYLNLNHNQLQGNMTDVF SNLPSLSTLDLSLNSLTGDLPQSFTSLSSLKTLYLQNNQFTGSINVLANLPLDNLNVGNNRFTG WIPNELKKINSLQTDGNSWSTGPAPPPPPFTAPPPSRNRKKSPGRHSNGSGSSSSSGGNSGLRA GAIAGIIVALLVIGAVVAFFLIKRKRKGTRQEHVEQRQPFNSYPSNEVKVTVLNALFTSLNSPG QLRGWQVNGGDPCGASWQGITCSGSSVTAIKLPSLGLSGNLAYNMNTMESLVELDMSQNNLGGG QNIQYNLPNKKLERLNLAGNQFAGNVPYSISTMPKLKYLNLNHNQLQGNMTDVFSNLPSLSTLD LSLNSLTGDLPQSFTSLSSLKTLYLQNNQFTGSINVLANLPLDNLNVGNNRFTGWIPNELKKIN SLQTDGNSWSTGPAPPPPPFTAPPPSRNRKKSPGRHSNGSGSSSSSGGNSGLRAGAIAGIIVAL LVIGAVVAFFLIKRKRKGTRQEHVEQRQPFNSYPSNEVKVTVLNALFTSLNSPGQLRGWQVNGG DPCGASWQGITCSGSSVTAIKLPSLGLSGNLAYNMNTMESLVELDMSQNNLGGGQNIQYNLPNK KLERLNLAGNQFAGNVPYSISTMPKLKYLNLNHNQLQGNMTDVFSNLPSLSTLDLSLNSLTGDL PQSFTSLSSLKTLYLQNNQFTGSINVLANLPLDNLNVGNNRFTGWIPNELKKINSLQTDGNSWS TGPAPPPPPFTAPPPSRNRKKSPGRHSNGSGSSSSSGGNSGLRAGAIAGIIVALLVIGAVVAFF LIKRKRKGTRQEHVEQRQPFNSYPSNEVK(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os10g0389900_circ_g.2

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