Plant Circular RNA Database

Detail information of Os12g0197200_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os12g0197200_circ_g.1
					
						ID in PlantcircBase
						osa_circ_010770
					
						Alias
						Os12circ01931/Os_ciR299
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr12: 5023056-5024066  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							u-circRNA							
									
						Identification method
						SMALT, Segemehl, find_circ
					
						Parent gene
						
							Os12g0197200						
					
						Parent gene annotation
						
							Conserved hypothetical protein. (Os12t0197200-01);Conserved hypo
thetical protein. (Os12t0197200-02)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							NA						
					
						Support reads
						2/121
					
						Tissues
						panicle/root
					
						Exon boundary  
						
							Yes-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os12t0197200-01:1
Os12t0197200-02:1

General Information
CircRNA Name	Os12g0197200_circ_g.1
ID in PlantcircBase	osa_circ_010770
Alias	Os12circ01931/Os_ciR299
Organism	Oryza sativa
Position	chr12: 5023056-5024066 JBrowse»
Reference genome	IRGSP-1.0.38
Type	u-circRNA
Identification method	SMALT, Segemehl, find_circ
Parent gene	Os12g0197200
Parent gene annotation	Conserved hypothetical protein. (Os12t0197200-01);Conserved hypo thetical protein. (Os12t0197200-02)
Parent gene strand	+
Alternative splicing	NA
Support reads	2/121
Tissues	panicle/root
Exon boundary	Yes-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os12t0197200-01:1 Os12t0197200-02:1

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							Yes							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							F: ACCAAGTCAGTGGCATTCAG
 R: GGACAGTTTCTCCGATAGGC
PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	Yes Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	F: ACCAAGTCAGTGGCATTCAG R: GGACAGTTTCTCCGATAGGC PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GATTACGCCAACCTGGTCTTTAATCAAAGTTGTTCTTCTAGATTTGGTAACAAACCAAGTCAGT
GGCATTCAGGCTTGATTTCTCTCGGTTCTGAATAAGggatactttgatagccggccagcatttg
atgctaaataaaggggctttccaagcacactttataagacctgataatttagcctatcggagaa
actgtccc

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 149
Transcript exons: 5023056-5023109,5023972-5024066
GGATACTTTGATAGCCGGCCAGCATTTGATGCTAAATAAAGGGGCTTTCCAAGCCGCCAACCTG
GTCTTTAATCAAAGTTGTTCTTCTAGATTTGGTAACAAACCAAGTCAGTGGCATTCAGGCTTGA
TTTCTCTCGGTTCTGAATAAG
Transcript length: 163
Transcript exons: 5023056-5023108,5023957-5024066
GGATACTTTGATAGCCGGCCAGCATTTGATGCTAAATAAAGGGGCTTTCCAAGGTTCACCTGAG
ATTACGCCAACCTGGTCTTTAATCAAAGTTGTTCTTCTAGATTTGGTAACAAACCAAGTCAGTG
GCATTCAGGCTTGATTTCTCTCGGTTCTGAATAAG
Transcript length: 219
Transcript exons: 5023056-5023244,5024037-5024066
GGATACTTTGATAGCCGGCCAGCATTTGATGCTAAATAAAGGGGCTTTCCAAGCACACTTTATA
AGACCTGATAATTTAGCCTATCGGAGAAACTGTCCCTTCAATCAGGAGAGTTGGATAATGATTT
TAGGGATTCCTTCGGATTACATAAATGAGACTCACATTCATAGGATTGTAAACGCTTTTGGCAG
GCTTGATTTCTCTCGGTTCTGAATAAG
Transcript length: 221
Transcript exons: 5023056-5023166,5023957-5024066
GGATACTTTGATAGCCGGCCAGCATTTGATGCTAAATAAAGGGGCTTTCCAAGCACACTTTATA
AGACCTGATAATTTAGCCTATCGGAGAAACTGTCCCTTCAATCAGGAGTTCACCTGAGATTACG
CCAACCTGGTCTTTAATCAAAGTTGTTCTTCTAGATTTGGTAACAAACCAAGTCAGTGGCATTC
AGGCTTGATTTCTCTCGGTTCTGAATAAG
Transcript length: 223
Transcript exons: 5023056-5023174,5023963-5024066
GGATACTTTGATAGCCGGCCAGCATTTGATGCTAAATAAAGGGGCTTTCCAAGCACACTTTATA
AGACCTGATAATTTAGCCTATCGGAGAAACTGTCCCTTCAATCAGGAGAGTTGGACTGAGATTA
CGCCAACCTGGTCTTTAATCAAAGTTGTTCTTCTAGATTTGGTAACAAACCAAGTCAGTGGCAT
TCAGGCTTGATTTCTCTCGGTTCTGAATAAG
Transcript length: 224
Transcript exons: 5023056-5023196,5023984-5024066
GGATACTTTGATAGCCGGCCAGCATTTGATGCTAAATAAAGGGGCTTTCCAAGCACACTTTATA
AGACCTGATAATTTAGCCTATCGGAGAAACTGTCCCTTCAATCAGGAGAGTTGGATAATGATTT
TAGGGATTCCTTCCTTTAATCAAAGTTGTTCTTCTAGATTTGGTAACAAACCAAGTCAGTGGCA
TTCAGGCTTGATTTCTCTCGGTTCTGAATAAG
Transcript length: 232
Transcript exons: 5023056-5023105,5023885-5024066
GGATACTTTGATAGCCGGCCAGCATTTGATGCTAAATAAAGGGGCTTTCCCTTAATGTTTGCTT
TACCATTGCAGAAAATGTGTTTAAACTATTGATCACTGCTTTCAGCCCTCCATGGTCAGTTCAC
CTGAGATTACGCCAACCTGGTCTTTAATCAAAGTTGTTCTTCTAGATTTGGTAACAAACCAAGT
CAGTGGCATTCAGGCTTGATTTCTCTCGGTTCTGAATAAG
Transcript length: 240
Transcript exons: 5023056-5023145,5023917-5024066
GGATACTTTGATAGCCGGCCAGCATTTGATGCTAAATAAAGGGGCTTTCCAAGCACACTTTATA
AGACCTGATAATTTAGCCTATCGGAGGTTTAAACTATTGATCACTGCTTTCAGCCCTCCATGGT
CAGTTCACCTGAGATTACGCCAACCTGGTCTTTAATCAAAGTTGTTCTTCTAGATTTGGTAACA
AACCAAGTCAGTGGCATTCAGGCTTGATTTCTCTCGGTTCTGAATAAG
Transcript length: 246
Transcript exons: 5023056-5023172,5023938-5024066
GGATACTTTGATAGCCGGCCAGCATTTGATGCTAAATAAAGGGGCTTTCCAAGCACACTTTATA
AGACCTGATAATTTAGCCTATCGGAGAAACTGTCCCTTCAATCAGGAGAGTTGTTTCAGCCCTC
CATGGTCAGTTCACCTGAGATTACGCCAACCTGGTCTTTAATCAAAGTTGTTCTTCTAGATTTG
GTAACAAACCAAGTCAGTGGCATTCAGGCTTGATTTCTCTCGGTTCTGAATAAG
Transcript length: 253
Transcript exons: 5023056-5023220,5023979-5024066
GGATACTTTGATAGCCGGCCAGCATTTGATGCTAAATAAAGGGGCTTTCCAAGCACACTTTATA
AGACCTGATAATTTAGCCTATCGGAGAAACTGTCCCTTCAATCAGGAGAGTTGGATAATGATTT
TAGGGATTCCTTCGGATTACATAAATGAGACTCACATCTGGTCTTTAATCAAAGTTGTTCTTCT
AGATTTGGTAACAAACCAAGTCAGTGGCATTCAGGCTTGATTTCTCTCGGTTCTGAATAAG
Transcript length: 258
Transcript exons: 5023056-5023180,5023934-5024066
GGATACTTTGATAGCCGGCCAGCATTTGATGCTAAATAAAGGGGCTTTCCAAGCACACTTTATA
AGACCTGATAATTTAGCCTATCGGAGAAACTGTCCCTTCAATCAGGAGAGTTGGATAATGACTG
CTTTCAGCCCTCCATGGTCAGTTCACCTGAGATTACGCCAACCTGGTCTTTAATCAAAGTTGTT
CTTCTAGATTTGGTAACAAACCAAGTCAGTGGCATTCAGGCTTGATTTCTCTCGGTTCTGAATA
AG
Transcript length: 270
Transcript exons: 5023056-5023210,5023952-5024066
GGATACTTTGATAGCCGGCCAGCATTTGATGCTAAATAAAGGGGCTTTCCAAGCACACTTTATA
AGACCTGATAATTTAGCCTATCGGAGAAACTGTCCCTTCAATCAGGAGAGTTGGATAATGATTT
TAGGGATTCCTTCGGATTACATAAATGGGTCAGTTCACCTGAGATTACGCCAACCTGGTCTTTA
ATCAAAGTTGTTCTTCTAGATTTGGTAACAAACCAAGTCAGTGGCATTCAGGCTTGATTTCTCT
CGGTTCTGAATAAG
Transcript length: 272
Transcript exons: 5023056-5023116,5023138-5023238,5023957-5024066
GGATACTTTGATAGCCGGCCAGCATTTGATGCTAAATAAAGGGGCTTTCCAAGCACACTTTTAT
CGGAGAAACTGTCCCTTCAATCAGGAGAGTTGGATAATGATTTTAGGGATTCCTTCGGATTACA
TAAATGAGACTCACATTCATAGGATTGTAAACGCGTTCACCTGAGATTACGCCAACCTGGTCTT
TAATCAAAGTTGTTCTTCTAGATTTGGTAACAAACCAAGTCAGTGGCATTCAGGCTTGATTTCT
CTCGGTTCTGAATAAG
Transcript length: 275
Transcript exons: 5023056-5023126,5023129-5023229,5023964-5024066
GGATACTTTGATAGCCGGCCAGCATTTGATGCTAAATAAAGGGGCTTTCCAAGCACACTTTATA
AGACCTGAATTTAGCCTATCGGAGAAACTGTCCCTTCAATCAGGAGAGTTGGATAATGATTTTA
GGGATTCCTTCGGATTACATAAATGAGACTCACATTCATAGGATTGAGATTACGCCAACCTGGT
CTTTAATCAAAGTTGTTCTTCTAGATTTGGTAACAAACCAAGTCAGTGGCATTCAGGCTTGATT
TCTCTCGGTTCTGAATAAG
Transcript length: 278
Transcript exons: 5023056-5023145,5023879-5024066
GGATACTTTGATAGCCGGCCAGCATTTGATGCTAAATAAAGGGGCTTTCCAAGCACACTTTATA
AGACCTGATAATTTAGCCTATCGGAGCTTCCTCTTAATGTTTGCTTTACCATTGCAGAAAATGT
GTTTAAACTATTGATCACTGCTTTCAGCCCTCCATGGTCAGTTCACCTGAGATTACGCCAACCT
GGTCTTTAATCAAAGTTGTTCTTCTAGATTTGGTAACAAACCAAGTCAGTGGCATTCAGGCTTG
ATTTCTCTCGGTTCTGAATAAG
Transcript length: 292
Transcript exons: 5023056-5023244,5023964-5024066
GGATACTTTGATAGCCGGCCAGCATTTGATGCTAAATAAAGGGGCTTTCCAAGCACACTTTATA
AGACCTGATAATTTAGCCTATCGGAGAAACTGTCCCTTCAATCAGGAGAGTTGGATAATGATTT
TAGGGATTCCTTCGGATTACATAAATGAGACTCACATTCATAGGATTGTAAACGCTTTTGGTGA
GATTACGCCAACCTGGTCTTTAATCAAAGTTGTTCTTCTAGATTTGGTAACAAACCAAGTCAGT
GGCATTCAGGCTTGATTTCTCTCGGTTCTGAATAAG
Transcript length: 294
Transcript exons: 5023056-5023234,5023952-5024066
GGATACTTTGATAGCCGGCCAGCATTTGATGCTAAATAAAGGGGCTTTCCAAGCACACTTTATA
AGACCTGATAATTTAGCCTATCGGAGAAACTGTCCCTTCAATCAGGAGAGTTGGATAATGATTT
TAGGGATTCCTTCGGATTACATAAATGAGACTCACATTCATAGGATTGTAAGGTCAGTTCACCT
GAGATTACGCCAACCTGGTCTTTAATCAAAGTTGTTCTTCTAGATTTGGTAACAAACCAAGTCA
GTGGCATTCAGGCTTGATTTCTCTCGGTTCTGAATAAG
Transcript length: 302
Transcript exons: 5023056-5023262,5023972-5024066
GGATACTTTGATAGCCGGCCAGCATTTGATGCTAAATAAAGGGGCTTTCCAAGCACACTTTATA
AGACCTGATAATTTAGCCTATCGGAGAAACTGTCCCTTCAATCAGGAGAGTTGGATAATGATTT
TAGGGATTCCTTCGGATTACATAAATGAGACTCACATTCATAGGATTGTAAACGCTTTTGGGAA
GTTTATACATTGGCACGCCAACCTGGTCTTTAATCAAAGTTGTTCTTCTAGATTTGGTAACAAA
CCAAGTCAGTGGCATTCAGGCTTGATTTCTCTCGGTTCTGAATAAG
Transcript length: 305
Transcript exons: 5023056-5023212,5023919-5024066
GGATACTTTGATAGCCGGCCAGCATTTGATGCTAAATAAAGGGGCTTTCCAAGCACACTTTATA
AGACCTGATAATTTAGCCTATCGGAGAAACTGTCCCTTCAATCAGGAGAGTTGGATAATGATTT
TAGGGATTCCTTCGGATTACATAAATGAGTTAAACTATTGATCACTGCTTTCAGCCCTCCATGG
TCAGTTCACCTGAGATTACGCCAACCTGGTCTTTAATCAAAGTTGTTCTTCTAGATTTGGTAAC
AAACCAAGTCAGTGGCATTCAGGCTTGATTTCTCTCGGTTCTGAATAAG
Transcript length: 310
Transcript exons: 5023056-5023210,5023912-5024066
GGATACTTTGATAGCCGGCCAGCATTTGATGCTAAATAAAGGGGCTTTCCAAGCACACTTTATA
AGACCTGATAATTTAGCCTATCGGAGAAACTGTCCCTTCAATCAGGAGAGTTGGATAATGATTT
TAGGGATTCCTTCGGATTACATAAATGAATGTGTTTAAACTATTGATCACTGCTTTCAGCCCTC
CATGGTCAGTTCACCTGAGATTACGCCAACCTGGTCTTTAATCAAAGTTGTTCTTCTAGATTTG
GTAACAAACCAAGTCAGTGGCATTCAGGCTTGATTTCTCTCGGTTCTGAATAAG
Transcript length: 314
Transcript exons: 5023056-5023186,5023884-5024066
GGATACTTTGATAGCCGGCCAGCATTTGATGCTAAATAAAGGGGCTTTCCAAGCACACTTTATA
AGACCTGATAATTTAGCCTATCGGAGAAACTGTCCCTTCAATCAGGAGAGTTGGATAATGATTT
TAGTCTTAATGTTTGCTTTACCATTGCAGAAAATGTGTTTAAACTATTGATCACTGCTTTCAGC
CCTCCATGGTCAGTTCACCTGAGATTACGCCAACCTGGTCTTTAATCAAAGTTGTTCTTCTAGA
TTTGGTAACAAACCAAGTCAGTGGCATTCAGGCTTGATTTCTCTCGGTTCTGAATAAG
Transcript length: 314
Transcript exons: 5023056-5023209,5023907-5024066
GGATACTTTGATAGCCGGCCAGCATTTGATGCTAAATAAAGGGGCTTTCCAAGCACACTTTATA
AGACCTGATAATTTAGCCTATCGGAGAAACTGTCCCTTCAATCAGGAGAGTTGGATAATGATTT
TAGGGATTCCTTCGGATTACATAAATCAGAAAATGTGTTTAAACTATTGATCACTGCTTTCAGC
CCTCCATGGTCAGTTCACCTGAGATTACGCCAACCTGGTCTTTAATCAAAGTTGTTCTTCTAGA
TTTGGTAACAAACCAAGTCAGTGGCATTCAGGCTTGATTTCTCTCGGTTCTGAATAAG
Transcript length: 335
Transcript exons: 5023056-5023236,5023913-5024066
GGATACTTTGATAGCCGGCCAGCATTTGATGCTAAATAAAGGGGCTTTCCAAGCACACTTTATA
AGACCTGATAATTTAGCCTATCGGAGAAACTGTCCCTTCAATCAGGAGAGTTGGATAATGATTT
TAGGGATTCCTTCGGATTACATAAATGAGACTCACATTCATAGGATTGTAAACATGTGTTTAAA
CTATTGATCACTGCTTTCAGCCCTCCATGGTCAGTTCACCTGAGATTACGCCAACCTGGTCTTT
AATCAAAGTTGTTCTTCTAGATTTGGTAACAAACCAAGTCAGTGGCATTCAGGCTTGATTTCTC
TCGGTTCTGAATAAG
Transcript length: 336
Transcript exons: 5023056-5023243,5023919-5024066
GGATACTTTGATAGCCGGCCAGCATTTGATGCTAAATAAAGGGGCTTTCCAAGCACACTTTATA
AGACCTGATAATTTAGCCTATCGGAGAAACTGTCCCTTCAATCAGGAGAGTTGGATAATGATTT
TAGGGATTCCTTCGGATTACATAAATGAGACTCACATTCATAGGATTGTAAACGCTTTTGTTAA
ACTATTGATCACTGCTTTCAGCCCTCCATGGTCAGTTCACCTGAGATTACGCCAACCTGGTCTT
TAATCAAAGTTGTTCTTCTAGATTTGGTAACAAACCAAGTCAGTGGCATTCAGGCTTGATTTCT
CTCGGTTCTGAATAAG
Transcript length: 338
Transcript exons: 5023056-5023205,5023879-5024066
GGATACTTTGATAGCCGGCCAGCATTTGATGCTAAATAAAGGGGCTTTCCAAGCACACTTTATA
AGACCTGATAATTTAGCCTATCGGAGAAACTGTCCCTTCAATCAGGAGAGTTGGATAATGATTT
TAGGGATTCCTTCGGATTACATCTTCCTCTTAATGTTTGCTTTACCATTGCAGAAAATGTGTTT
AAACTATTGATCACTGCTTTCAGCCCTCCATGGTCAGTTCACCTGAGATTACGCCAACCTGGTC
TTTAATCAAAGTTGTTCTTCTAGATTTGGTAACAAACCAAGTCAGTGGCATTCAGGCTTGATTT
CTCTCGGTTCTGAATAAG
Transcript length: 338
Transcript exons: 5023056-5023243,5023917-5024066
GGATACTTTGATAGCCGGCCAGCATTTGATGCTAAATAAAGGGGCTTTCCAAGCACACTTTATA
AGACCTGATAATTTAGCCTATCGGAGAAACTGTCCCTTCAATCAGGAGAGTTGGATAATGATTT
TAGGGATTCCTTCGGATTACATAAATGAGACTCACATTCATAGGATTGTAAACGCTTTTGGTTT
AAACTATTGATCACTGCTTTCAGCCCTCCATGGTCAGTTCACCTGAGATTACGCCAACCTGGTC
TTTAATCAAAGTTGTTCTTCTAGATTTGGTAACAAACCAAGTCAGTGGCATTCAGGCTTGATTT
CTCTCGGTTCTGAATAAG
Transcript length: 338
Transcript exons: 5023056-5023248,5023922-5024066
GGATACTTTGATAGCCGGCCAGCATTTGATGCTAAATAAAGGGGCTTTCCAAGCACACTTTATA
AGACCTGATAATTTAGCCTATCGGAGAAACTGTCCCTTCAATCAGGAGAGTTGGATAATGATTT
TAGGGATTCCTTCGGATTACATAAATGAGACTCACATTCATAGGATTGTAAACGCTTTTGGGAA
GAACTATTGATCACTGCTTTCAGCCCTCCATGGTCAGTTCACCTGAGATTACGCCAACCTGGTC
TTTAATCAAAGTTGTTCTTCTAGATTTGGTAACAAACCAAGTCAGTGGCATTCAGGCTTGATTT
CTCTCGGTTCTGAATAAG
Transcript length: 346
Transcript exons: 5023056-5023214,5023880-5024066
GGATACTTTGATAGCCGGCCAGCATTTGATGCTAAATAAAGGGGCTTTCCAAGCACACTTTATA
AGACCTGATAATTTAGCCTATCGGAGAAACTGTCCCTTCAATCAGGAGAGTTGGATAATGATTT
TAGGGATTCCTTCGGATTACATAAATGAGACTTCCTCTTAATGTTTGCTTTACCATTGCAGAAA
ATGTGTTTAAACTATTGATCACTGCTTTCAGCCCTCCATGGTCAGTTCACCTGAGATTACGCCA
ACCTGGTCTTTAATCAAAGTTGTTCTTCTAGATTTGGTAACAAACCAAGTCAGTGGCATTCAGG
CTTGATTTCTCTCGGTTCTGAATAAG
						
					

						Genomic sequence
						
							GGATACTTTGATAGCCGGCCAGCATTTGATGCTAAATAAAGGGGCTTTCCAAGCACACTTTATA
AGACCTGATAATTTAGCCTATCGGAGAAACTGTCCCTTCAATCAGGAGAGTTGGATAATGATTT
TAGGGATTCCTTCGGATTACATAAATGAGACTCACATTCATAGGATTGTAAACGCTTTTGGGAA
GTTTATACATTGGCATCACAAAATAGTGTTCTTGGCAGAGTTCTGGGAAGTTAATCCATTGGCA
TCAAAGAGATAGTATTCTTGGCAGAGTTCTGGCAAAATGTCTTTATACAGACCCTAGTGAAGTG
CCTAGAAGAATTGTTATGGAAAATCCTGTTAATATGGGAGGTAATGGAGAGTCATGGACTCTGC
ACACTTCTGTGCTTAATTGGGAGTTCACTGATGTTCTTCCTATGGATGAGGATTTACCCATTTT
GTGGTAGCAAATTGAGGATTTGCATATGGAGATACCAAATATGCAGCATGAGAATAATGTACTT
CTTGAATTTAGGGGAACAACATGCTGAAAAGAATAATATGCAGCATGAGAATAACGTACTTCTT
CAGAATTTAGGGGAACAACATGCTGAAAAGAATGCTCCTGGCCAAGTCCAAGAAGAACATGCTG
AAAAGAATGCTCCTGGCCAAGTCCAAGAAGAAATGCAGTAATACTATGTCTCCATTGATGATTT
TTCCTTGGAAGATTCAGATTCAGTCCATAACCTGGAGTAGTATGAATTAATATAAGGAACTGGA
CCAGTTGGAGATAGTGCCTTTCAAGTTATCACTGTCTTCCTTCCCTTTCAGCATTCTTCCTCTT
AATGTTTGCTTTACCATTGCAGAAAATGTGTTTAAACTATTGATCACTGCTTTCAGCCCTCCAT
GGTCAGTTCACCTGAGATTACGCCAACCTGGTCTTTAATCAAAGTTGTTCTTCTAGATTTGGTA
ACAAACCAAGTCAGTGGCATTCAGGCTTGATTTCTCTCGGTTCTGAATAAG
						
					

			
		

Sequences
Splice junction sequence	GATTACGCCAACCTGGTCTTTAATCAAAGTTGTTCTTCTAGATTTGGTAACAAACCAAGTCAGT GGCATTCAGGCTTGATTTCTCTCGGTTCTGAATAAGggatactttgatagccggccagcatttg atgctaaataaaggggctttccaagcacactttataagacctgataatttagcctatcggagaa actgtccc
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 149 Transcript exons: 5023056-5023109,5023972-5024066 GGATACTTTGATAGCCGGCCAGCATTTGATGCTAAATAAAGGGGCTTTCCAAGCCGCCAACCTG GTCTTTAATCAAAGTTGTTCTTCTAGATTTGGTAACAAACCAAGTCAGTGGCATTCAGGCTTGA TTTCTCTCGGTTCTGAATAAG Transcript length: 163 Transcript exons: 5023056-5023108,5023957-5024066 GGATACTTTGATAGCCGGCCAGCATTTGATGCTAAATAAAGGGGCTTTCCAAGGTTCACCTGAG ATTACGCCAACCTGGTCTTTAATCAAAGTTGTTCTTCTAGATTTGGTAACAAACCAAGTCAGTG GCATTCAGGCTTGATTTCTCTCGGTTCTGAATAAG Transcript length: 219 Transcript exons: 5023056-5023244,5024037-5024066 GGATACTTTGATAGCCGGCCAGCATTTGATGCTAAATAAAGGGGCTTTCCAAGCACACTTTATA AGACCTGATAATTTAGCCTATCGGAGAAACTGTCCCTTCAATCAGGAGAGTTGGATAATGATTT TAGGGATTCCTTCGGATTACATAAATGAGACTCACATTCATAGGATTGTAAACGCTTTTGGCAG GCTTGATTTCTCTCGGTTCTGAATAAG Transcript length: 221 Transcript exons: 5023056-5023166,5023957-5024066 GGATACTTTGATAGCCGGCCAGCATTTGATGCTAAATAAAGGGGCTTTCCAAGCACACTTTATA AGACCTGATAATTTAGCCTATCGGAGAAACTGTCCCTTCAATCAGGAGTTCACCTGAGATTACG CCAACCTGGTCTTTAATCAAAGTTGTTCTTCTAGATTTGGTAACAAACCAAGTCAGTGGCATTC AGGCTTGATTTCTCTCGGTTCTGAATAAG Transcript length: 223 Transcript exons: 5023056-5023174,5023963-5024066 GGATACTTTGATAGCCGGCCAGCATTTGATGCTAAATAAAGGGGCTTTCCAAGCACACTTTATA AGACCTGATAATTTAGCCTATCGGAGAAACTGTCCCTTCAATCAGGAGAGTTGGACTGAGATTA CGCCAACCTGGTCTTTAATCAAAGTTGTTCTTCTAGATTTGGTAACAAACCAAGTCAGTGGCAT TCAGGCTTGATTTCTCTCGGTTCTGAATAAG Transcript length: 224 Transcript exons: 5023056-5023196,5023984-5024066 GGATACTTTGATAGCCGGCCAGCATTTGATGCTAAATAAAGGGGCTTTCCAAGCACACTTTATA AGACCTGATAATTTAGCCTATCGGAGAAACTGTCCCTTCAATCAGGAGAGTTGGATAATGATTT TAGGGATTCCTTCCTTTAATCAAAGTTGTTCTTCTAGATTTGGTAACAAACCAAGTCAGTGGCA TTCAGGCTTGATTTCTCTCGGTTCTGAATAAG Transcript length: 232 Transcript exons: 5023056-5023105,5023885-5024066 GGATACTTTGATAGCCGGCCAGCATTTGATGCTAAATAAAGGGGCTTTCCCTTAATGTTTGCTT TACCATTGCAGAAAATGTGTTTAAACTATTGATCACTGCTTTCAGCCCTCCATGGTCAGTTCAC CTGAGATTACGCCAACCTGGTCTTTAATCAAAGTTGTTCTTCTAGATTTGGTAACAAACCAAGT CAGTGGCATTCAGGCTTGATTTCTCTCGGTTCTGAATAAG Transcript length: 240 Transcript exons: 5023056-5023145,5023917-5024066 GGATACTTTGATAGCCGGCCAGCATTTGATGCTAAATAAAGGGGCTTTCCAAGCACACTTTATA AGACCTGATAATTTAGCCTATCGGAGGTTTAAACTATTGATCACTGCTTTCAGCCCTCCATGGT CAGTTCACCTGAGATTACGCCAACCTGGTCTTTAATCAAAGTTGTTCTTCTAGATTTGGTAACA AACCAAGTCAGTGGCATTCAGGCTTGATTTCTCTCGGTTCTGAATAAG Transcript length: 246 Transcript exons: 5023056-5023172,5023938-5024066 GGATACTTTGATAGCCGGCCAGCATTTGATGCTAAATAAAGGGGCTTTCCAAGCACACTTTATA AGACCTGATAATTTAGCCTATCGGAGAAACTGTCCCTTCAATCAGGAGAGTTGTTTCAGCCCTC CATGGTCAGTTCACCTGAGATTACGCCAACCTGGTCTTTAATCAAAGTTGTTCTTCTAGATTTG GTAACAAACCAAGTCAGTGGCATTCAGGCTTGATTTCTCTCGGTTCTGAATAAG Transcript length: 253 Transcript exons: 5023056-5023220,5023979-5024066 GGATACTTTGATAGCCGGCCAGCATTTGATGCTAAATAAAGGGGCTTTCCAAGCACACTTTATA AGACCTGATAATTTAGCCTATCGGAGAAACTGTCCCTTCAATCAGGAGAGTTGGATAATGATTT TAGGGATTCCTTCGGATTACATAAATGAGACTCACATCTGGTCTTTAATCAAAGTTGTTCTTCT AGATTTGGTAACAAACCAAGTCAGTGGCATTCAGGCTTGATTTCTCTCGGTTCTGAATAAG Transcript length: 258 Transcript exons: 5023056-5023180,5023934-5024066 GGATACTTTGATAGCCGGCCAGCATTTGATGCTAAATAAAGGGGCTTTCCAAGCACACTTTATA AGACCTGATAATTTAGCCTATCGGAGAAACTGTCCCTTCAATCAGGAGAGTTGGATAATGACTG CTTTCAGCCCTCCATGGTCAGTTCACCTGAGATTACGCCAACCTGGTCTTTAATCAAAGTTGTT CTTCTAGATTTGGTAACAAACCAAGTCAGTGGCATTCAGGCTTGATTTCTCTCGGTTCTGAATA AG Transcript length: 270 Transcript exons: 5023056-5023210,5023952-5024066 GGATACTTTGATAGCCGGCCAGCATTTGATGCTAAATAAAGGGGCTTTCCAAGCACACTTTATA AGACCTGATAATTTAGCCTATCGGAGAAACTGTCCCTTCAATCAGGAGAGTTGGATAATGATTT TAGGGATTCCTTCGGATTACATAAATGGGTCAGTTCACCTGAGATTACGCCAACCTGGTCTTTA ATCAAAGTTGTTCTTCTAGATTTGGTAACAAACCAAGTCAGTGGCATTCAGGCTTGATTTCTCT CGGTTCTGAATAAG Transcript length: 272 Transcript exons: 5023056-5023116,5023138-5023238,5023957-5024066 GGATACTTTGATAGCCGGCCAGCATTTGATGCTAAATAAAGGGGCTTTCCAAGCACACTTTTAT CGGAGAAACTGTCCCTTCAATCAGGAGAGTTGGATAATGATTTTAGGGATTCCTTCGGATTACA TAAATGAGACTCACATTCATAGGATTGTAAACGCGTTCACCTGAGATTACGCCAACCTGGTCTT TAATCAAAGTTGTTCTTCTAGATTTGGTAACAAACCAAGTCAGTGGCATTCAGGCTTGATTTCT CTCGGTTCTGAATAAG Transcript length: 275 Transcript exons: 5023056-5023126,5023129-5023229,5023964-5024066 GGATACTTTGATAGCCGGCCAGCATTTGATGCTAAATAAAGGGGCTTTCCAAGCACACTTTATA AGACCTGAATTTAGCCTATCGGAGAAACTGTCCCTTCAATCAGGAGAGTTGGATAATGATTTTA GGGATTCCTTCGGATTACATAAATGAGACTCACATTCATAGGATTGAGATTACGCCAACCTGGT CTTTAATCAAAGTTGTTCTTCTAGATTTGGTAACAAACCAAGTCAGTGGCATTCAGGCTTGATT TCTCTCGGTTCTGAATAAG Transcript length: 278 Transcript exons: 5023056-5023145,5023879-5024066 GGATACTTTGATAGCCGGCCAGCATTTGATGCTAAATAAAGGGGCTTTCCAAGCACACTTTATA AGACCTGATAATTTAGCCTATCGGAGCTTCCTCTTAATGTTTGCTTTACCATTGCAGAAAATGT GTTTAAACTATTGATCACTGCTTTCAGCCCTCCATGGTCAGTTCACCTGAGATTACGCCAACCT GGTCTTTAATCAAAGTTGTTCTTCTAGATTTGGTAACAAACCAAGTCAGTGGCATTCAGGCTTG ATTTCTCTCGGTTCTGAATAAG Transcript length: 292 Transcript exons: 5023056-5023244,5023964-5024066 GGATACTTTGATAGCCGGCCAGCATTTGATGCTAAATAAAGGGGCTTTCCAAGCACACTTTATA AGACCTGATAATTTAGCCTATCGGAGAAACTGTCCCTTCAATCAGGAGAGTTGGATAATGATTT TAGGGATTCCTTCGGATTACATAAATGAGACTCACATTCATAGGATTGTAAACGCTTTTGGTGA GATTACGCCAACCTGGTCTTTAATCAAAGTTGTTCTTCTAGATTTGGTAACAAACCAAGTCAGT GGCATTCAGGCTTGATTTCTCTCGGTTCTGAATAAG Transcript length: 294 Transcript exons: 5023056-5023234,5023952-5024066 GGATACTTTGATAGCCGGCCAGCATTTGATGCTAAATAAAGGGGCTTTCCAAGCACACTTTATA AGACCTGATAATTTAGCCTATCGGAGAAACTGTCCCTTCAATCAGGAGAGTTGGATAATGATTT TAGGGATTCCTTCGGATTACATAAATGAGACTCACATTCATAGGATTGTAAGGTCAGTTCACCT GAGATTACGCCAACCTGGTCTTTAATCAAAGTTGTTCTTCTAGATTTGGTAACAAACCAAGTCA GTGGCATTCAGGCTTGATTTCTCTCGGTTCTGAATAAG Transcript length: 302 Transcript exons: 5023056-5023262,5023972-5024066 GGATACTTTGATAGCCGGCCAGCATTTGATGCTAAATAAAGGGGCTTTCCAAGCACACTTTATA AGACCTGATAATTTAGCCTATCGGAGAAACTGTCCCTTCAATCAGGAGAGTTGGATAATGATTT TAGGGATTCCTTCGGATTACATAAATGAGACTCACATTCATAGGATTGTAAACGCTTTTGGGAA GTTTATACATTGGCACGCCAACCTGGTCTTTAATCAAAGTTGTTCTTCTAGATTTGGTAACAAA CCAAGTCAGTGGCATTCAGGCTTGATTTCTCTCGGTTCTGAATAAG Transcript length: 305 Transcript exons: 5023056-5023212,5023919-5024066 GGATACTTTGATAGCCGGCCAGCATTTGATGCTAAATAAAGGGGCTTTCCAAGCACACTTTATA AGACCTGATAATTTAGCCTATCGGAGAAACTGTCCCTTCAATCAGGAGAGTTGGATAATGATTT TAGGGATTCCTTCGGATTACATAAATGAGTTAAACTATTGATCACTGCTTTCAGCCCTCCATGG TCAGTTCACCTGAGATTACGCCAACCTGGTCTTTAATCAAAGTTGTTCTTCTAGATTTGGTAAC AAACCAAGTCAGTGGCATTCAGGCTTGATTTCTCTCGGTTCTGAATAAG Transcript length: 310 Transcript exons: 5023056-5023210,5023912-5024066 GGATACTTTGATAGCCGGCCAGCATTTGATGCTAAATAAAGGGGCTTTCCAAGCACACTTTATA AGACCTGATAATTTAGCCTATCGGAGAAACTGTCCCTTCAATCAGGAGAGTTGGATAATGATTT TAGGGATTCCTTCGGATTACATAAATGAATGTGTTTAAACTATTGATCACTGCTTTCAGCCCTC CATGGTCAGTTCACCTGAGATTACGCCAACCTGGTCTTTAATCAAAGTTGTTCTTCTAGATTTG GTAACAAACCAAGTCAGTGGCATTCAGGCTTGATTTCTCTCGGTTCTGAATAAG Transcript length: 314 Transcript exons: 5023056-5023186,5023884-5024066 GGATACTTTGATAGCCGGCCAGCATTTGATGCTAAATAAAGGGGCTTTCCAAGCACACTTTATA AGACCTGATAATTTAGCCTATCGGAGAAACTGTCCCTTCAATCAGGAGAGTTGGATAATGATTT TAGTCTTAATGTTTGCTTTACCATTGCAGAAAATGTGTTTAAACTATTGATCACTGCTTTCAGC CCTCCATGGTCAGTTCACCTGAGATTACGCCAACCTGGTCTTTAATCAAAGTTGTTCTTCTAGA TTTGGTAACAAACCAAGTCAGTGGCATTCAGGCTTGATTTCTCTCGGTTCTGAATAAG Transcript length: 314 Transcript exons: 5023056-5023209,5023907-5024066 GGATACTTTGATAGCCGGCCAGCATTTGATGCTAAATAAAGGGGCTTTCCAAGCACACTTTATA AGACCTGATAATTTAGCCTATCGGAGAAACTGTCCCTTCAATCAGGAGAGTTGGATAATGATTT TAGGGATTCCTTCGGATTACATAAATCAGAAAATGTGTTTAAACTATTGATCACTGCTTTCAGC CCTCCATGGTCAGTTCACCTGAGATTACGCCAACCTGGTCTTTAATCAAAGTTGTTCTTCTAGA TTTGGTAACAAACCAAGTCAGTGGCATTCAGGCTTGATTTCTCTCGGTTCTGAATAAG Transcript length: 335 Transcript exons: 5023056-5023236,5023913-5024066 GGATACTTTGATAGCCGGCCAGCATTTGATGCTAAATAAAGGGGCTTTCCAAGCACACTTTATA AGACCTGATAATTTAGCCTATCGGAGAAACTGTCCCTTCAATCAGGAGAGTTGGATAATGATTT TAGGGATTCCTTCGGATTACATAAATGAGACTCACATTCATAGGATTGTAAACATGTGTTTAAA CTATTGATCACTGCTTTCAGCCCTCCATGGTCAGTTCACCTGAGATTACGCCAACCTGGTCTTT AATCAAAGTTGTTCTTCTAGATTTGGTAACAAACCAAGTCAGTGGCATTCAGGCTTGATTTCTC TCGGTTCTGAATAAG Transcript length: 336 Transcript exons: 5023056-5023243,5023919-5024066 GGATACTTTGATAGCCGGCCAGCATTTGATGCTAAATAAAGGGGCTTTCCAAGCACACTTTATA AGACCTGATAATTTAGCCTATCGGAGAAACTGTCCCTTCAATCAGGAGAGTTGGATAATGATTT TAGGGATTCCTTCGGATTACATAAATGAGACTCACATTCATAGGATTGTAAACGCTTTTGTTAA ACTATTGATCACTGCTTTCAGCCCTCCATGGTCAGTTCACCTGAGATTACGCCAACCTGGTCTT TAATCAAAGTTGTTCTTCTAGATTTGGTAACAAACCAAGTCAGTGGCATTCAGGCTTGATTTCT CTCGGTTCTGAATAAG Transcript length: 338 Transcript exons: 5023056-5023205,5023879-5024066 GGATACTTTGATAGCCGGCCAGCATTTGATGCTAAATAAAGGGGCTTTCCAAGCACACTTTATA AGACCTGATAATTTAGCCTATCGGAGAAACTGTCCCTTCAATCAGGAGAGTTGGATAATGATTT TAGGGATTCCTTCGGATTACATCTTCCTCTTAATGTTTGCTTTACCATTGCAGAAAATGTGTTT AAACTATTGATCACTGCTTTCAGCCCTCCATGGTCAGTTCACCTGAGATTACGCCAACCTGGTC TTTAATCAAAGTTGTTCTTCTAGATTTGGTAACAAACCAAGTCAGTGGCATTCAGGCTTGATTT CTCTCGGTTCTGAATAAG Transcript length: 338 Transcript exons: 5023056-5023243,5023917-5024066 GGATACTTTGATAGCCGGCCAGCATTTGATGCTAAATAAAGGGGCTTTCCAAGCACACTTTATA AGACCTGATAATTTAGCCTATCGGAGAAACTGTCCCTTCAATCAGGAGAGTTGGATAATGATTT TAGGGATTCCTTCGGATTACATAAATGAGACTCACATTCATAGGATTGTAAACGCTTTTGGTTT AAACTATTGATCACTGCTTTCAGCCCTCCATGGTCAGTTCACCTGAGATTACGCCAACCTGGTC TTTAATCAAAGTTGTTCTTCTAGATTTGGTAACAAACCAAGTCAGTGGCATTCAGGCTTGATTT CTCTCGGTTCTGAATAAG Transcript length: 338 Transcript exons: 5023056-5023248,5023922-5024066 GGATACTTTGATAGCCGGCCAGCATTTGATGCTAAATAAAGGGGCTTTCCAAGCACACTTTATA AGACCTGATAATTTAGCCTATCGGAGAAACTGTCCCTTCAATCAGGAGAGTTGGATAATGATTT TAGGGATTCCTTCGGATTACATAAATGAGACTCACATTCATAGGATTGTAAACGCTTTTGGGAA GAACTATTGATCACTGCTTTCAGCCCTCCATGGTCAGTTCACCTGAGATTACGCCAACCTGGTC TTTAATCAAAGTTGTTCTTCTAGATTTGGTAACAAACCAAGTCAGTGGCATTCAGGCTTGATTT CTCTCGGTTCTGAATAAG Transcript length: 346 Transcript exons: 5023056-5023214,5023880-5024066 GGATACTTTGATAGCCGGCCAGCATTTGATGCTAAATAAAGGGGCTTTCCAAGCACACTTTATA AGACCTGATAATTTAGCCTATCGGAGAAACTGTCCCTTCAATCAGGAGAGTTGGATAATGATTT TAGGGATTCCTTCGGATTACATAAATGAGACTTCCTCTTAATGTTTGCTTTACCATTGCAGAAA ATGTGTTTAAACTATTGATCACTGCTTTCAGCCCTCCATGGTCAGTTCACCTGAGATTACGCCA ACCTGGTCTTTAATCAAAGTTGTTCTTCTAGATTTGGTAACAAACCAAGTCAGTGGCATTCAGG CTTGATTTCTCTCGGTTCTGAATAAG
Genomic sequence	GGATACTTTGATAGCCGGCCAGCATTTGATGCTAAATAAAGGGGCTTTCCAAGCACACTTTATA AGACCTGATAATTTAGCCTATCGGAGAAACTGTCCCTTCAATCAGGAGAGTTGGATAATGATTT TAGGGATTCCTTCGGATTACATAAATGAGACTCACATTCATAGGATTGTAAACGCTTTTGGGAA GTTTATACATTGGCATCACAAAATAGTGTTCTTGGCAGAGTTCTGGGAAGTTAATCCATTGGCA TCAAAGAGATAGTATTCTTGGCAGAGTTCTGGCAAAATGTCTTTATACAGACCCTAGTGAAGTG CCTAGAAGAATTGTTATGGAAAATCCTGTTAATATGGGAGGTAATGGAGAGTCATGGACTCTGC ACACTTCTGTGCTTAATTGGGAGTTCACTGATGTTCTTCCTATGGATGAGGATTTACCCATTTT GTGGTAGCAAATTGAGGATTTGCATATGGAGATACCAAATATGCAGCATGAGAATAATGTACTT CTTGAATTTAGGGGAACAACATGCTGAAAAGAATAATATGCAGCATGAGAATAACGTACTTCTT CAGAATTTAGGGGAACAACATGCTGAAAAGAATGCTCCTGGCCAAGTCCAAGAAGAACATGCTG AAAAGAATGCTCCTGGCCAAGTCCAAGAAGAAATGCAGTAATACTATGTCTCCATTGATGATTT TTCCTTGGAAGATTCAGATTCAGTCCATAACCTGGAGTAGTATGAATTAATATAAGGAACTGGA CCAGTTGGAGATAGTGCCTTTCAAGTTATCACTGTCTTCCTTCCCTTTCAGCATTCTTCCTCTT AATGTTTGCTTTACCATTGCAGAAAATGTGTTTAAACTATTGATCACTGCTTTCAGCCCTCCAT GGTCAGTTCACCTGAGATTACGCCAACCTGGTCTTTAATCAAAGTTGTTCTTCTAGATTTGGTA ACAAACCAAGTCAGTGGCATTCAGGCTTGATTTCTCTCGGTTCTGAATAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.432080382

Conservation Information
Conserved circRNAs	NA
PMCS	0.432080382

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Lu et al., 2015;Ye et al., 2015

circRNA

Detail information of Os12g0197200_circ_g.1

Address

Any questions?

Supported by