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circRNA ID
AT1G01060_circ_g.2
Alias
ath_circ_000008, 1:33981-34327
Organism
Arabidpsis thaliana
Position
chr1: 33981-34327  JBrowse»
Reference genome
TAIR10.38
Type  
ue-circRNA
Identification method
find_circ; CIRI2
Parent gene
Parent gene annotation
LHY1
Parent gene strand
-
Alternative splicing
Splice junction sequence  
TGTCACTTTGTTTTCTATTCACATTCTCTGCCACTTGAGGAGGCGAAAAGCTTTGAGGCAATCT
TTCTCTTGCAAAGAGAGCCTGAAACGCTATACGACCctccaagtctgtcatgtagaagcttctc
cttccaatcgaagccttttgcagactttttcatcactttgattgtttatgttcccaacttggct
ctctttca
Support reads
2
Tissues
root
Exon boundary  
Yes-Yes
Splicing signals  
CT-AC
Sanger sequencing for BSS  
NA
PCR primers for BSS  
NA
Assembled circRNA sequence  
NA
Sanger sequencing for FL  
NA
PCR primers for FL  
NA
Genomic sequence
CTCCAAGTCTGTCATGTAGAAGCTTCTCCTTCCAATCGAAGCCTTTTGCAGACTTTTTCATCAC
TTTGATTGTTTATGTTCCCAACTTGGCTCTCTTTCACTTCCATTGAACATCTCTTGTATGGCTT
AAATCCTGTCTGTCTCGTTTTAAGACTCTTGCATGTTCCAACACCGATCATTACTACTCCTTCT
TGGTCTGCAGCACAAGAATCCTGGCTTTTGAAATTAGGAGCCAATGGCATTGACGTGTCACTTT
GTTTTCTATTCACATTCTCTGCCACTTGAGGAGGCGAAAAGCTTTGAGGCAATCTTTCTCTTGC
AAAGAGAGCCTGAAACGCTATACGACC
Number of exons covered
AT1G01060.1:1
AT1G01060.8:1
AT1G01060.6:1
AT1G01060.4:1
AT1G01060.5:1
AT1G01060.2:1
AT1G01060.7:1
AT1G01060.3:1
Conserved circRNAs
NA
Coding potential
NA
Potential coding position
NA
Potential amino acid sequence
NA
Sponge-miRNAs
NA
circRNA-miRNA-mRNA network
References
Philips et al., 2020

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Any questions or suggestions, please contact the Fan's lab, bioinplant@zju.edu.cn
For submittion, please click here. Last modified at 2021-03-09.

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