Detail information of Os04g0566500_circ_g.1


General Information
CircRNA Name Os04g0566500_circ_g.1
ID in PlantcircBase osa_circ_024912
Alias NA
Organism Oryza sativa
Position chr4: 28428143-28428510  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method CIRCexplorer
Parent gene Os04g0566500
Parent gene annotation Similar to Isoform 2 of Protein argonaute 1B. (Os04t0566500-01);
Similar to Isoform 2 of Protein argonaute 1B. (Os04t0566500-02);
Similar to Argonaute protein. (Os04t0566500-03);Similar to Argon
aute protein. (Os04t0566500-04)
Parent gene strand -
Alternative splicing NA
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0566500-04:2
Os04t0566500-03:2
Os04t0566500-02:2
Os04t0566500-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATGAGTAACATCCGCACCAAATATGATAGTTGGTCTGTCACTGACAAGGGGAATCCTCCTTGT
CAAAGCATCCACAAGTACAGTATTCCTTCCCCCCACttgatcatgccaccagtaacagttcctc
tatgcgggtcttgccatactttgaaaagatcttgtatcaattcttgacgatgggcttgggcact
caccaatc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTGATCATGCCACCAGTAACAGTTCCTCTATGCGGGTCTTGCCATACTTTGAAAAGATCTTGTA
TCAATTCTTGACGATGGGCTTGGGCACTCACCAATCCAGCATACTTAGTGACTTCAGGCCAGTC
TTGAGAAGCAACCACCTAAAAGGGAGAACAGTTACAAACTAGCCAAACTTACATTGTAACTTGG
TAGAATTTCTGGCCAATCTTCATCGTAATTGCACTTACAGCTGCAATGGAAGGACTGGAATCTT
CTCCAGGATGAGGATGAGTAACATCCGCACCAAATATGATAGTTGGTCTGTCACTGACAAGGGG
AATCCTCCTTGTCAAAGCATCCACAAGTACAGTATTCCTTCCCCCCAC
Conservation Information
Conserved circRNAs osi_circ_014670
PMCS 0.562585643
Functional Information
Coding potential Y
Potential coding position 28428435-28428143(+)
28428173-28428214(+)
Potential amino acid sequence MIVGLSLTRGILLVKASTSTVFLPPT*(+)
MRVLPYFEKILYQFLTMGLGTHQSSILSDFRPVLRSNHSCNGRTGIFSRMRMSNIRTKYDSWSV
TDKGNPPCQSIHKYSIPSPHLIMPPVTVPLCGSCHTLKRSCINS*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017