Detail information of AT5G26910_circ_g.1


General Information
CircRNA Name AT5G26910_circ_g.1
ID in PlantcircBase ath_circ_040686
Alias NA
Organism Arabidpsis thaliana
Position chr5: 9467087-9469534  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method CIRCexplorer, KNIFE, PcircRNA_finder
Parent gene AT5G26910
Parent gene annotation TRM8
Parent gene strand -
Alternative splicing NA
Support reads 1
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT5G26910.1:4
AT5G26910.4:4
AT5G26910.3:4
AT5G26910.2:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCGGAGAAGAGCTTCTTGCGGGATTTTCCATGCCAATCAAATAAATTTAAAAACCCTCCTCTGG
ATCGTTTCCTCTCAACAACCTCCATTTTTAGTTCATcatattctgcggtctgtctgcaatctga
gaaacccttgctgcaagagcttcttagatcatctgcttccgtcacagtgctaatgctgctaact
tcgtgctc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATATTCTGCGGTCTGTCTGCAATCTGAGAAACCCTTGCTGCAAGAGCTTCTTAGATCATCTGC
TTCCGTCACAGTGCTAATGCTGCTAACTTCGTGCTCTTCTGCTTGTATCTTTATTTTCAGAAGA
AATAACGCAAAACATAATTAGTTAGAAACCCTTTAATAATGTAATATATTTACATGTAGAAACT
GTACCAAGGTTACTAAAATTACAGAATGCAAAATATGACAAATTAGAAATTGCATATAGATTGG
ATACTTCATCTCTTAGCTACATTAGGAAGGAACTAACCTGGAATTTTTGTTTGTCATAGAATGA
GGTGCAGTCAGAAACAGATTCACTCTCTGATAAAACTTTACGCAGACCGTTTTGGGTTGACTTT
TCATATTCTGATGAAAATGAAATCATCCCGTTCATCTCATCCATTGGAATGGAATATGAAGGCT
CTTCTTGGGTCAGGCTACAGCTAGAAGACTCAAGCTTAGAAGTCAGCTCTCTGAGCTTTTGCTC
CAACAGAGCATTTAAGGAATCGCCGCCAATATTGAAACTAACTGCAGAGTCTGTGTCTTGACCA
ATTCCTTGAGTAGAGGATAATGAATCAGAAGATAAACCTTTGATGGGAGATGAGAATGTGAATG
AAATCACATCCATTTCCTTTTTCCGATCATCTTTACCTTTGTTCAAGCCACCATCAATGGTGAT
GTTACATTTGATCATATTTTCGCTCCTTTTGGTCCGTTTATCATCAGAGATTCCAGATTTTTGC
ATCCCATTTGGGAGCTTTTTGCTCCGGGGAAGAGTCTTTTTGCGTGACAAAGATAAAGAAGTAT
TCTTTTCCGCCGAGGCCGTTGATAAACCCAACTGCTTTGATATCGATCCACTTTCCACTGGAAC
CTTGTTTACAACTTTGTTATTTACTTTGCTGCTTTTTTGGTTCAAAACAGAGGTCATCGAAGGT
TGGTTGTCTCTGCAGTTCTGTTTCTGGTTATTCTGCTTAAACATATTCTTTCCCATGCTAATGG
GAGCTCCTCTGAGAGCATTCTGGCTTTTGACTACGCACTTTTTAGCGTCTGCCTTCTCCTTTTG
GTTTGCAGAGTTTCTGGTGACACTTAAGGGCGTTGTACCGGCCTTTGCTTGTGCGGATACATAA
GATGGCTTCACTTTACCCTTCAAACCATCAGTACTGCTTTTCCCCATGAACTTACTAGTTGACG
GTGTCGTGAGTGATGTTGTAATTCTCTTCTCGTTGTGCTTTCCACTTGGGTACTTAAGGTTGAA
GGTATCATTGGAGTTTTGACGGCTAGACACTTTCTGTGCAGCTTCTAATTTCTCTCTTAAATCT
TGAATCCTCATAGGAACTGATGAAGGAGAATTCGATGGCGAAAACCGTGTTCTAGCAACCATCC
TAGGACTTGGTTCAATCATTCTTGAAGCCGCTTCCATAACATAAATAGGGTTCCTGGATGGGAC
AAACCCAGGACTCCGGATAGGAGACAGGTGTCTATTGTTGGTAACACATATCGGTTTAGCTGAC
CTGGGAGGAAAAGTCTCAGACTGAAACCGTTCAATCGGTTGGTTGCGCCCATTATTCGTTCTAG
AATCCAAATGGTCCCAAGAAATACCATCATAGTCACTACGGAGATTTACATAACCAAGATTCTC
ATATGCATCCCATCTGTTAGTGTTTTGTGAAGGTCTGAGTAAGAACGGATCAAGATCGGGATTA
AGTCGAGGTTCCTGGACATTTGGTACCGGTAGAGACTCTAAACCCATAAGCCTCGCAACCACAC
TCGGGGCTCTTGTCCCCTGTCCATCATCACTGGTTACTGAAGATGCACAACAGCTCGAGTCACT
TCTCTGGTTGTTACTTGAACTCTTTCCAATCTCATCAACCTCAATCTGTACAAAAGACAACAAC
AAACAAAGTTGGTTCCTCTCATCCGCTAAACTAAGACGAAAGCAACTTGACATAAACAAGGGAA
TAGTATGAAGACAACTCACAAGAGAAACCCTCGACTTCAAGAGGTTTTGTGCAGGCTGCTTTGA
TTCTTCTGGTACAAAAACAAGAAGAAGATCGAACTTGAGCTTACTGATTAAATTCCAACCAAGA
TAGTAAACAGACTTTCTTATATACACAACATTATGAATCAAAGATACAAAACGTATTATATAAA
CAAAATCTTGAGAACAAGAACAGCATAGTCTTCTAAACCAATAACGAAATCCTTCAAACAAGTA
CATTGTCTTAGACTTCTACATGGCACAGAGTTCACAAGAACTGAACCAAACATTTCTTAACTAT
TTGTGAGCAATACTGCAAACAAACCTGAGAGTTCTGAGGTGCTGCCGGAGAAGAGCTTCTTGCG
GGATTTTCCATGCCAATCAAATAAATTTAAAAACCCTCCTCTGGATCGTTTCCTCTCAACAACC
TCCATTTTTAGTTCAT
Conservation Information
Conserved circRNAs NA
PMCS 0.114342409
Functional Information
Coding potential Y
Potential coding position 9469524-9467089(-)
Potential amino acid sequence MEVVERKRSRGGFLNLFDWHGKSRKKLFSGSTSELSEESKQPAQNLLKSRVSLIEVDEIGKSSS
NNQRSDSSCCASSVTSDDGQGTRAPSVVARLMGLESLPVPNVQEPRLNPDLDPFLLRPSQNTNR
WDAYENLGYVNLRSDYDGISWDHLDSRTNNGRNQPIERFQSETFPPRSAKPICVTNNRHLSPIR
SPGFVPSRNPIYVMEAASRMIEPSPRMVARTRFSPSNSPSSVPMRIQDLREKLEAAQKVSSRQN
SNDTFNLKYPSGKHNEKRITTSLTTPSTSKFMGKSSTDGLKGKVKPSYVSAQAKAGTTPLSVTR
NSANQKEKADAKKCVVKSQNALRGAPISMGKNMFKQNNQKQNCRDNQPSMTSVLNQKSSKVNNK
VVNKVPVESGSISKQLGLSTASAEKNTSLSLSRKKTLPRSKKLPNGMQKSGISDDKRTKRSENM
IKCNITIDGGLNKGKDDRKKEMDVISFTFSSPIKGLSSDSLSSTQGIGQDTDSAVSFNIGGDSL
NALLEQKLRELTSKLESSSCSLTQEEPSYSIPMDEMNGMISFSSEYEKSTQNGLRKVLSESESV
SDCTSFYDKQKFQIQAEEHEVSSISTVTEADDLRSSCSKGFSDCRQTAEYDELKMEVVERKRSR
GGFLNLFDWHGKSRKKLFSGSTSELSEESKQPAQNLLKSRVSLIEVDEIGKSSSNNQRSDSSCC
ASSVTSDDGQGTRAPSVVARLMGLESLPVPNVQEPRLNPDLDPFLLRPSQNTNRWDAYENLGYV
NLRSDYDGISWDHLDSRTNNGRNQPIERFQSETFPPRSAKPICVTNNRHLSPIRSPGFVPSRNP
IYVMEAASRMIEPSPRMVARTRFSPSNSPSSVPMRIQDLREKLEAAQKVSSRQNSNDTFNLKYP
SGKHNEKRITTSLTTPSTSKFMGKSSTDGLKGKVKPSYVSAQAKAGTTPLSVTRNSANQKEKAD
AKKCVVKSQNALRGAPISMGKNMFKQNNQKQNCRDNQPSMTSVLNQKSSKVNNKVVNKVPVESG
SISKQLGLSTASAEKNTSLSLSRKKTLPRSKKLPNGMQKSGISDDKRTKRSENMIKCNITIDGG
LNKGKDDRKKEMDVISFTFSSPIKGLSSDSLSSTQGIGQDTDSAVSFNIGGDSLNALLEQKLRE
LTSKLESSSCSLTQEEPSYSIPMDEMNGMISFSSEYEKSTQNGLRKVLSESESVSDCTSFYDKQ
KFQIQAEEHEVSSISTVTEADDLRSSCSKGFSDCRQTAEYDELKMEVVERKRSRGGFLNLFDWH
GKSRKKLFSGSTSELSEESKQPAQNLLKSRVSLIEVDEIGKSSSNNQRSDSSCCASSVTSDDGQ
GTRAPSVVARLMGLESLPVPNVQEPRLNPDLDPFLLRPSQNTNRWDAYENLGYVNLRSDYDGIS
WDHLDSRTNNGRNQPIERFQSETFPPRSAKPICVTNNRHLSPIRSPGFVPSRNPIYVMEAASRM
IEPSPRMVARTRFSPSNSPSSVPMRIQDLREKLEAAQKVSSRQNSNDTFNLKYPSGKHNEKRIT
TSLTTPSTSKFMGKSSTDGLKGKVKPSYVSAQAKAGTTPLSVTRNSANQKEKADAKKCVVKSQN
ALRGAPISMGKNMFKQNNQKQNCRDNQPSMTSVLNQKSSKVNNKVVNKVPVESGSISKQLGLST
ASAEKNTSLSLSRKKTLPRSKKLPNGMQKSGISDDKRTKRSENMIKCNITIDGGLNKGKDDRKK
EMDVISFTFSSPIKGLSSDSLSSTQGIGQDTDSAVSFNIGGDSLNALLEQKLRELTSKLESSSC
SLTQEEPSYSIPMDEMNGMISFSSEYEKSTQNGLRKVLSESESVSDCTSFYDKQKFQIQAEEHE
VSSISTVTEADDLRSSCSKGFSDCRQTAEYDELKMEVVERKRSRGGFLNLFDWHGKSRKKLFSG
STSELSEESKQPAQNLLKSRVSLIEVDEIGKSSSNNQRSDSSCCASSVTSDDGQGTRAPSVVAR
LMGLESLPVPNVQEPRLNPDLDPFLLRPSQNTNRWDAYENLGYVNLRSDYDGISWDHLDSRTNN
GRNQPIERFQSETFPPRSAKPICVTNNRHLSPIRSPGFVPSRNPIYVMEAASRMIEPSPRMVAR
TRFSPSNSPSSVPMRIQDLREKLEAAQKVSSRQNSNDTFNLKYPSGKHNEKRITTSLTTPSTSK
FMGKSSTDGLKGKVKPSYVSAQAKAGTTPLSVTRNSANQKEKADAKKCVVKSQNALRGAPISMG
KNMFKQNNQKQNCRDNQPSMTSVLNQKSSKVNNKVVNKVPVESGSISKQLGLSTASAEKNTSLS
LSRKKTLPRSKKLPNGMQKSGISDDKRTKRSENMIKCNITIDGGLNKGKDDRKKEMDVISFTFS
SPIKGLSSDSLSSTQGIGQDTDSAVSFNIGGDSLNALLEQKLRELTSKLESSSCSLTQEEPSYS
IPMDEMNGMISFSSEYEKSTQNGLRKVLSESESVSDCTSFYDKQKFQIQAEEHEVSSISTVTEA
DDLRSSCSKGFSDCRQTAEY(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017