Detail information of Os06g0338200_circ_g.1


General Information
CircRNA Name Os06g0338200_circ_g.1
ID in PlantcircBase osa_circ_030752
Alias NA
Organism Oryza sativa
Position chr6: 13476827-13477015  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method circseq_cup
Parent gene Os06g0338200
Parent gene annotation Copper amine oxidase family protein. (Os06t0338200-01)
Parent gene strand +
Alternative splicing Os06g0338200_circ_g.2 Os06g0338200_circ_g.3 Os06g0338200_circ_g.4
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   GC-CC
Number of exons covered Os06t0338200-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATCGCCGCCGACAACGCGTCCGTGCTCTCGCACGCCGTCCACCGCGGGCCCGGCTTCCCGATG
TTCACGGACGAGGACCAGATCGCGGCCATGgccgacgccgctgccacctcctcccaaatgaccc
tgccgcgccgcgcgttcgtcatcgcgcgggccggcggccagtcgcacgagttcaccgtcga
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 189
Transcript exons: 13476827-13477015
GCCGACGCCGCTGCCACCTCCTCCCAAATGACCCTGCCGCGCCGCGCGTTCGTCATCGCGCGGG
CCGGCGGCCAGTCGCACGAGTTCACCGTCGACATCGCCGCCGACAACGCGTCCGTGCTCTCGCA
CGCCGTCCACCGCGGGCCCGGCTTCCCGATGTTCACGGACGAGGACCAGATCGCGGCCATG

Genomic sequence GCCGACGCCGCTGCCACCTCCTCCCAAATGACCCTGCCGCGCCGCGCGTTCGTCATCGCGCGGG
CCGGCGGCCAGTCGCACGAGTTCACCGTCGACATCGCCGCCGACAACGCGTCCGTGCTCTCGCA
CGCCGTCCACCGCGGGCCCGGCTTCCCGATGTTCACGGACGAGGACCAGATCGCGGCCATG
Conservation Information
Conserved circRNAs NA
PMCS 0.304927682
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2016