Detail information of Zm00001d037546_circ_g.1


General Information
CircRNA Name Zm00001d037546_circ_g.1
ID in PlantcircBase zma_circ_002312
Alias circ1081
Organism Zea mays
Position chr6: 128897346-128901573  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method CIRI
Parent gene Zm00001d037546
Parent gene annotation protein_coding
Parent gene strand +
Alternative splicing NA
Support reads 2
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered Zm00001d037546_T005:7
Zm00001d037546_T028:4
Zm00001d037546_T011:7
Zm00001d037546_T013:7
Zm00001d037546_T004:7
Zm00001d037546_T025:7
Zm00001d037546_T026:7
Zm00001d037546_T033:7
Zm00001d037546_T022:8
Zm00001d037546_T035:7
Zm00001d037546_T020:5
Zm00001d037546_T024:7
Zm00001d037546_T008:7
Zm00001d037546_T009:7
Zm00001d037546_T003:7
Zm00001d037546_T016:8
Zm00001d037546_T018:5
Zm00001d037546_T012:7
Zm00001d037546_T030:8
Zm00001d037546_T029:7
Zm00001d037546_T001:7
Zm00001d037546_T032:7
Zm00001d037546_T014:7
Zm00001d037546_T006:7
Zm00001d037546_T027:7
Zm00001d037546_T034:7
Zm00001d037546_T019:5
Zm00001d037546_T007:5
Zm00001d037546_T021:5
Zm00001d037546_T037:6
Zm00001d037546_T023:7
Zm00001d037546_T015:7
Zm00001d037546_T010:8
Zm00001d037546_T031:6
Zm00001d037546_T017:6
Zm00001d037546_T002:7
Zm00001d037546_T036:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATGTTCTTATTTTACTTTCTTGGCCTGATAAAGGAATTGCTTGATGAGATTACTGAATTGGAA
AAGCAAAGAGATGAGCTTGAGGCACAGCTGAAGAAGgcatatgccttactggagggaaagaagt
gaacaaagaaatcatgagtaatgtacaagacttggccaaggcattttcagaatacaaagatgaa
gtcctggt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCATATGCCTTACTGGAGGGAAAGAAGTGAACAAAGAAATCATGAGTAATGTACAAGACTTGGC
CAAGGCATTTTCAGAATACAAAGATGAAGTCCTGGTATGCTTTTGGTTTTTCCTTTAGGAGAAT
CTGTTGTCTTTAGAAAAAAACATGACATTAACTTATGTTGTTTATTAATTGTTGAAACTAGAAG
TATCTAATAATTGGATATTTCTGCTGCTTAGTTACCTAACTGTACCATTCTGGGATACAACCAT
TGGATGGAGCTTTTCTTCTTAGACCTGAATATATTTTCACTTTTTTGGTCCATTTATGTTGTCC
ACGTTTTTTTATTCTTGAATGCAGGGGTGCCAAACTGTGCTTTATTTTATCCCAAAATAGCTGC
TTAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCTCAAAAATCATATAAGTGTTTGTATACT
CTTAACAGCTAACACTCGCACTCGTTTTTTCTTGAAGTTGAAATCGAAGTTAGTGTTAAGATGC
ACTACTCAAGTTTTAGTACCATATTGATTTTGGTCAAGATTAGAGACTAATAGACACTGGTTTT
AAAATTATTGTATTATTATTTTTTAATACTTCAGATTTAGTTATTTGATAGTTTTTATCTAGAC
TTGGGGTCCTCATTTACTTTTATTATTGATCTGTGGCCTGCACATCAATACATCAACCGAGTCC
CTAATGTCTGACAATATGATTTTCAACTGGCTTTTCTCAATCCTCGTAGTTGAGCTTTATGCCC
TCATGTTCCGGTTCCTAGGTTCAAAAGGGGTGAAGCAAATGTAGTGCCTGTATGGTTTATAGTT
TCAGTGTTTCTGGAAAAGGAAAAATTTTGTGATACTGTTTATAAAAGACTTAAGCTAAAATATA
TGCATGTTTCTATGGGGTATGATTTGTGAAACATTTCCTGAGATGCACATGCACATATAATTAT
GGGTTACTGTATTCTTCTGATTCTGTAGTGTCCAATGGTTCACTGTATCTGTGTGAACAGGTGA
AACGTGAAGAGCTGCTTGAGTATGCCCAAAGTATCATTTCAGGACTGAAGAGAAATGCTGACAT
TGTGAGGTGATAGAATAGAACCTGCTAATTACCTGTTAATATATTATATTGAGAAGTTGCAGCT
TCTTCTGGTAGGTTAATTACAAATATTTTTTTGCAGTACTTGCCTTGATTTTCTTGGAAACTAA
TCACAAAAAAGGAACAAACTGTACAAACTAAACAATAACCATACCTGAAGGCCTCTACCAAATC
TCTGAAATATCAAATATTGTGGACTGCACACAAAATAATTGTGTATTCTGCTACAGTAGAAGGC
CCAAACACTTCGATATATGCTTTTGTCTATGGTTTCTGGGTACATTAGCTTATTCTGGAGCTTA
TATTTTATTTCAGGATAGATGCTGAAACCCTAGAATTGCAGAGAAAACTAGACGAGAAGCAGAA
ATCACGAGGTCAATCACCTGAATATCAAGATAAAACGTCAGATAAGATTGCTGCTGCAAATCTT
GAGGTAATACTACTACTGTTACATCTGGTGCTTCTTGTTTTGGACATACATGTGGCCGAACTTT
CTAAATTTTTGCTACCAATACTGGAAATTAGTTAGAAAATATGAAAATTGCATGTGGATTTGTT
ATTAGAAGTACTATCATACAATTGCAAATTATGAAATGTAAACATTCCTTCGTAATAGTGCATA
CATATGCTACACCAACTTACCGCCTAGTATCAGAATTGGTGATTAAAGTGTTCAATATTCTGTT
CTATTTTTGCTGTTCTAGTCATATTTATTTTATTAAGGTCTAAAATAAGATGATTATGATCCCT
GTATTCTTCAGGTCTTCAAAGAAGCACTTGGTGAACTCCGCTTATGCTCTAGAGTTGAAGAACT
TCTGCTGAAGAAGAAATCAATCACTCTTGGTGACTCCCTGGAGATTCATTCTCAGAAGGCATGT
TTGTGTTTTATATTTAGATGCTTTCAGTTTTGAGTTGAGGTCCCTTGAATTGTTATGGAGTAAG
TATAATTTTGGCTACTAATCATGGCCAAGTTTTAGCACATTTATTCGAACTTTCTTTGGCTTAC
CCTATGTTTTCAGTTGTTATTTTAGAAGCACCCCTTTACTGGAATGACTCTGGATTGTTAGCTG
TAAACCTTCAGTGATCTTCTTAGCATCTGACTTCTTATGAAGTGTGGACTTCAGGCTTCCATAC
GAGATCTGATAATAATAGGAGTATGCAGTCTCCTGCTGATACTTTTATTGGTTGCATTATATGA
TGATTCCTACTTTTAATAACATAGTTGTAGTACTTTACAACAAAAGATTGACAAAAAACCACTT
GTGTCTTTGATGGAGCTGTCCCTAATGTGATCTCAGTATTGAGTTGAGTGGAGGGGTCCCTGCT
GCTAGCTGCAGGAGAGCTTATGGAGAAGCTGGCTGGAAAACATGTTTTGGCCCTGTTAGGCTGT
GTTTTTGTTGTTCACTATAATGTTTTGGTCCGGTTTCTTATGGACTAGTGACCTCTACTTTCTC
TTTTCTATTGACCTCTACTTTCTCTCTTCTATAATGAAATGAAACTCAGTGTCCTGTGTTCTCT
AGAAAAAAGTATGTATTCTTAGGTAGTTTCGCTTGGTTAGAGTTTATGTGGCCCATAGCTTTGT
CTGGTTCTTTTATTTTGTTATTGTTGATTGCTGTAGGACTTTCAGGCCTACCTAAATATTCTAG
TTGATGCTCTGTAATGCTAACAGCACTCACAAATTACCAGGTAGATAAACTAAAGGTTTTAGCA
GATTCCCTGGCATGTTCATCCTCCAAAGCAGAACAGCGTATTTTGGAGCACAGGTTTTGCTTCT
GAAGTTGTTTTTTCTTGGTTCCTGTATAGAATAATTTTGTCATGGCACTTACAGAATCTCATGT
GAACAAAATATATTTCATCCTTGGATGTTTGCTTTGATTTTATTCTTTGGTTGAAACTCTTCTC
TATTGTTGTATATTACTTGCTCACAATTTATTTTTATCATCAATGACTCGGTTCAAAATCAGTT
AAACTTTTTTGTGTGTGCTTAAGCAACATGATGAAAAAACTAATACATTGTGATTACTCTGACA
TTGTGGATTACTGAATTTGTAATGTGCCAGATGCTCGCACCTTAGTCTCAGAACTAGCACATTT
TATTTCTGGTTTCCTGTGGTATCTGGACTTTTCGACACTTCGTACTTGCAACGAACAACTTGTA
TTTGTATATATGTTACTTTGCTGATTGTACATAATCTCTTCCGTCCTCACAATTTTTATCTGCT
GCTAACTTTCTAAGGAAGTGTCCTTGTGTAGTACAATTTTCTTTTGCTGTAATATTTATAAACC
CATTTATTCTTTGAAAATCTGAGATATCCAAATCATGGTACTGACAACTTGATGTGATTTTTCA
TTTGATCTTTTACCAGGCGCCAGAAAGAAGATGCTCTCAACTTTCGTGTGAAAAAAGAGAATGA
AGTCAGTGTTTCTGAAAAGGTAGGGTGCTACCTATTTTATGCACAGGTCTGGAAAGCATTGATG
CACTTTTGGGACTCAAAAATAGTGTATTCAACAGAAGTCCCTTTTGGAGCATAGGATTCTCAAG
TGTGGGAGAATTTGATAGGAAATCACACATTCACAGAAAATGCTTTACTTTCAAAACAGGACCC
TGGTTTAAAATTTTGGATATATCAAATTGCCATGTGTGTGTGTGTTTATCGAACGCGCAGGAGA
ACTGCACATCTTTATATATAAAGGAAAGGAGACAAACCCAAAGGGTTTTACAAGGCAGAGATCC
TGCCAAGAACAAAAAGAAAAAACACAAAAAACAGAACAAGACCAAGGGTCTAGATGGCTAAGGA
ACAATGCCATGTGTGTGTTGAATCATATCTGTAGCTTGTACCCATTTTATGCTATAGGGTAATA
GGAAAGCAGTTATGCATACTTAGATTCTCGCAGCACACATATGCACTTGCACAACATCAACTTT
TCTTTGCATAATATTTCATTTATGCTATTGAACAAATATGCATATGCTTTAGTGTTTATTTCTG
TGTCCCAGCCTGTTTATAGTGTAATCAAATAAGATGTTCTTATTTTACTTTCTTGGCCTGATAA
AGGAATTGCTTGATGAGATTACTGAATTGGAAAAGCAAAGAGATGAGCTTGAGGCACAGCTGAA
GAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.020104908
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b