Detail information of Solyc02g086460.2_circ_g.2


General Information
CircRNA Name Solyc02g086460.2_circ_g.2
ID in PlantcircBase sly_circ_000770
Alias Slcirc045
Organism Solanum lycopersicum
Position chr2: 49131366-49133410  JBrowse»
Reference genome SL2.50.38
Type   e-circRNA
Identification method CIRI
Parent gene Solyc02g086460.2
Parent gene annotation protein_coding
Parent gene strand +
Alternative splicing NA
Support reads 17
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Solyc02g086460.2.1:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACAGTTGAAGACACATCTGAAGAACTAGTTGTTGAAAAGAAAGATGAGAAACCAGCAATTGAA
GAAGAAGAACCTGAAACGGAAGCTCTTCAGGAGAAGaatttgccaattgtaaactcaaagaaca
caacagacaatgcatatccatacaataccaacaatgacattgctgactatgcatcagttgagga
aaaaactg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 2045
Transcript exons: 49131366-49133410
AATTTGCCAATTGTAAACTCAAAGAACACAACAGACAATGCATATCCATACAATACCAACAATG
ACATTGCTGACTATGCATCAGTTGAGGAAAAAACTGAAGAGGCAGAAGTTGAAGAGATATCTGA
AGAATCATCTATTGAAGAGAAATCTGAAGAATCAAGGGTTTTGGAGAAACCAGAAGAACCATCG
GTTGAGAAAATACCTGAAAAACCGACAATCGAAGAGAAACCTGAAACGGAAGCTCTTCAGGAGA
AG

Genomic sequence AATTTGCCAATTGTAAACTCAAAGAACACAACAGACAATGCATATCCATACAATACCAACAATG
ACATTGCTGACTATGCATCAGTTGAGGAAAAAACTGAAGAGGCAGAAGTTGAAGAGATATCTGA
AGAATCATCTATTGAAGAGAAATCTGAAGAATCAAGGGTTTTGGAGAAACCAGAAGAACCATCG
GTTGAGAAAATACCTGAAAAACCGACAATCGAAGAGAAACCTGAAACATCAACCGTGGGAGAAA
AGTTTGAAGAACCATCAGTTGAGGAGACGATCAAAGAACCAAAAATTGAGGAGAAACCTGAAAA
ACAAGTAACTGAAGAAACACCCAAGGAACTAGCGTTAGAAGAGATACATAAAGAACCAGCAATG
AAAGAGGAGAAACCTGAAAAGGTAACTCTTTTGGAAAAGGTAAGGGTCAAGTACTATCACAAAG
TTAATCCATTTTGTTAGTTATGCATGTACAGTGATTCACATGCTCTTCTTTTGAAAGGCTAAGT
GAAACAATAAATTCTTTTTGCAGAATATGCTAATTGTGGACTCAAACACCAAAACTGGCAGTGA
AATTCCATGCAATACCAATAATGATGATGCTCACTCCCCAGACATTGAGGAAAATCCTGAAGAA
TCGGCAGTTGAAATAAAAAATGAAGAACTAGTCATTGAAGAGAAACCTGATGTACCAGCAGTTG
AGGAGAAACCTCAAGAACCAACATTTGAGGAGAAATCTGAAGTACCAGCTGAGGAGAAACCTCA
AGAACCTGCGACTGAAGAAAAACCTCAGGAACCGGCAGCTATAGAAACACCTGAACTAGCACTT
GAAGAGAAACCTGAAGAACCAACGGTTGAAGATACATCTGAAGAGCTAGTTGTTGAAGAGAAAG
ATGAAAAGCCAGCAATTGAAGAGGAGGAACCTGAAATGGAAGCTCTTAAGGAGAAGGTGGGAAT
TAACACTCACAAAGTTTATTCAGCATACTAGCTTTATATGCGCACGAATTTACATATGTTTATC
TATTGAAAGACTAAATGAAACTTCAAATATTCTTGCAGAATTTTCCAATTGTAAACTCAAAGAA
CACAATAGACAATGCAATTCCATGCAATACAAACAATGACATTGCTGACTTCACATCAGTTGAG
GAAAAAACTGAAGAACCAATAGTTGAAGAGATATCTGAAGAATCGGCAATTGAAGAGAAATCTG
AAGAATCAAGGATTTTGGAGAAATCAGAAGAACCTGCGGTTGAGAAAATTCCTGAACAGCCGAC
AATTGAAGAGAAACCTGAAAACCCAACCGTGGGAGAAGAGTTTGAATTACCATCAGTTGAGGAG
ACAATCGAAGAACCAAAAATCGAGGAGAAACCTGAAAAACAAGTAATTGAAGAAACACCCAAGG
AACTAGCAGTTGAAGAGATGCATGAAGAAACAGCCGTGGAAGAGGAGAAACCTGAAAAGGTAAC
TCTTTCGGAAAAGGTAAGGGTCAAGCACTATCACAAAGTTAATCCATTTTGTTAGTTAGTATGT
ACTATGACTCACATCTGCGTCTTTATTGAAAGACTAAGTGAAACAATAAATTCTTTTTGCAGAA
TATGCTAATTGTAGACTCAACTGAAAAAACCGGCAGTGAAATCCCATGCAATACCAATAATGAT
GTTGAATACTCTCCAGACAGTGAGGAAAATCCTGAAGAATCGGCAGTTGAAGAAAAAACTGAAG
AACCACTCATTGAAGAGAAACCTGATGTACCAGCTATTAAGGAGAAACCCAAAGAACCAACATT
TGAGGAGAAATCTGAAGTACCAGTTGAGGAGAAACCTGAAGAACTAGAGATGACAGAGAAACCT
GAAGAACCAGCGGCTATAGAAACACCTGAAGAGCTTGCAGGGCAGGAAATACCTGAAGAACTAG
ACCTTGAAGAGAAACCTGAAGAACCAACAGTTGAAGACACATCTGAAGAACTAGTTGTTGAAAA
GAAAGATGAGAAACCAGCAATTGAAGAAGAAGAACCTGAAACGGAAGCTCTTCAGGAGAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.957149559
Functional Information
Coding potential Y
Potential coding position 49131748-49133407(+)
49133356-49131378(+)
49131435-49133403(-)
49131503-49133237(-)
Potential amino acid sequence MKEEKPEKVTLLEKNMLIVDSNTKTGSEIPCNTNNDDAHSPDIEENPEESAVEIKNEELVIEEK
PDVPAVEEKPQEPTFEEKSEVPAEEKPQEPATEEKPQEPAAIETPELALEEKPEEPTVEDTSEE
LVVEEKDEKPAIEEEEPEMEALKEKNFPIVNSKNTIDNAIPCNTNNDIADFTSVEEKTEEPIVE
EISEESAIEEKSEESRILEKSEEPAVEKIPEQPTIEEKPENPTVGEEFELPSVEETIEEPKIEE
KPEKQVIEETPKELAVEEMHEETAVEEEKPEKVTLSEKNMLIVDSTEKTGSEIPCNTNNDVEYS
PDSEENPEESAVEEKTEEPLIEEKPDVPAIKEKPKEPTFEEKSEVPVEEKPEELEMTEKPEEPA
AIETPEELAGQEIPEELDLEEKPEEPTVEDTSEELVVEKKDEKPAIEEEEPETEALQEKNLPIV
NSKNTTDNAYPYNTNNDIADYASVEEKTEEAEVEEISEESSIEEKSEESRVLEKPEEPSVEKIP
EKPTIEEKPETSTVGEKFEEPSVEETIKEPKIEEKPEKQVTEETPKELALEEIHKEPAMKEEKP
EKVTLLEKNMLIVDSNTKTGSEIPCNTNNDDAHSPDIEENPEESAVEIKNEELVIEEKPDVPAV
EEKPQEPTFEEKSEVPAEEKPQEPATEEKPQEPAAIETPELALEEKPEEPTVEDTSEELVVEEK
DEKPAIEEEEPEMEALKEKNFPIVNSKNTIDNAIPCNTNNDIADFTSVEEKTEEPIVEEISEES
AIEEKSEESRILEKSEEPAVEKIPEQPTIEEKPENPTVGEEFELPSVEETIEEPKIEEKPEKQV
IEETPKELAVEEMHEETAVEEEKPEKVTLSEKNMLIVDSTEKTGSEIPCNTNNDVEYSPDSEEN
PEESAVEEKTEEPLIEEKPDVPAIKEKPKEPTFEEKSEVPVEEKPEELEMTEKPEEPAAIETPE
ELAGQEIPEELDLEEKPEEPTVEDTSEELVVEKKDEKPAIEEEEPETEALQEKNLPIVNSKNTT
DNAYPYNTNNDIADYASVEEKTEEAEVEEISEESSIEEKSEESRVLEKPEEPSVEKIPEKPTIE
EKPETSTVGEKFEEPSVEETIKEPKIEEKPEKQVTEETPKELALEEIHKEPAMKEEKPEKVTLL
EKNMLIVDSNTKTGSEIPCNTNNDDAHSPDIEENPEESAVEIKNEELVIEEKPDVPAVEEKPQE
PTFEEKSEVPAEEKPQEPATEEKPQEPAAIETPELALEEKPEEPTVEDTSEELVVEEKDEKPAI
EEEEPEMEALKEKNFPIVNSKNTIDNAIPCNTNNDIADFTSVEEKTEEPIVEEISEESAIEEKS
EESRILEKSEEPAVEKIPEQPTIEEKPENPTVGEEFELPSVEETIEEPKIEEKPEKQVIEETPK
ELAVEEMHEETAVEEEKPEKVTLSEKNMLIVDSTEKTGSEIPCNTNNDVEYSPDSEENPEESAV
EEKTEEPLIEEKPDVPAIKEKPKEPTFEEKSEVPVEEKPEELEMTEKPEEPAAIETPEELAGQE
IPEELDLEEKPEEPTVEDTSEELVVEKKDEKPAIEEEEPETEALQEKNLPIVNSKNTTDNAYPY
NTNNDIADYASVEEKTEEAEVEEISEESSIEEKSEESRVLEKPEEPSVEKIPEKPTIEEKPETS
TVGEKFEEPSVEETIKEPKIEEKPEKQVTEETPKELALEEIHKEPAMKEEKPEKVTLLEKNMLI
VDSNTKTGSEIPCNTNNDDAHSPDIEENPEESAVEIKNEELVIEEKPDVPAVEEKPQEPTFEEK
SEVPAEEKPQEPATEEKPQEPAAIETPELALEEKPEEPTVEDTSEELVVEEKDEKPAIEEEEPE
MEALKEKNFPIVNSKNTIDNAIPCNTNNDIADFTSVEEKTEEPIVEEISEESAIEEKSEESRIL
EKSEEPAVEKIPEQPTIEEKPENPTVGEEFELPSVEETIEEPKIEEKPEKQVIEETPKELAVEE
MHEETAVEEEKPEKVTLSEKNMLIVDSTEKTGSEIPCNTNNDVEYSPDSEENPEESAVEEKTEE
PLIEEKPDVPAIKEKPKEPTFEEKSEVPVEEKPEELEMTEKPEEPAAIETPEELAGQEIPEELD
LEEKPEEPTVEDTSEELVVEKKDEKPAIEEEEPETEALQEK(+)
MRNQQLKKKNLKRKLFRRRICQL*(+)
MSLLVLYGYALSVVFFEFTIGKFFS*(-)
MILQISLQLLPLQFFPQLMHSQQCHCWYCMDMHCLLCSLSLQLANSSPEELPFQVLLLQLLVSH
LSFQQLVLQMCLQLLVLQVSLQGLVLQVFPALQALQVFL*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Wang et al., 2018b