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circRNA ID
Zm00001d023396_circ_g.1
Alias
zma_circ_006426, circMo17-00753
Organism
Zea mays
Position
chr10: 4674382-4674839  JBrowse»
Reference genome
AGPv4.38
Type  
ue-circRNA
Identification method
CIRI, CIRCexplor2
Parent gene
Zm00001d023396
Parent gene annotation
Putative RING zinc finger domain superfamily protein
Parent gene strand
-
Alternative splicing
NA
Splice junction sequence  
TATTTGCAGGGGCCTAGCGGGGTAGTAGATCTGCTGCCCGCCTGCTTCCGTACTGTCTGCCCGT
TGGTTTCAGGAGCAGGAGCGGGGTGAATAACTTCAGtcagccagccacgggttttttattatta
attcccagcgacaaatgttaccgtacagtacacaaaaccatgccattgccatcatctcctcgaa
tgctcccg
Support reads
2
Tissues
leaf
Exon boundary  
No-No
Splicing signals  
GC-CA
Sanger sequencing for BSS  
NA
PCR primers for BSS  
NA
Assembled circRNA sequence  
NA
Sanger sequencing for FL  
NA
PCR primers for FL  
NA
Genomic sequence
TCAGCCAGCCACGGGTTTTTTATTATTAATTCCCAGCGACAAATGTTACCGTACAGTACACAAA
ACCATGCCATTGCCATCATCTCCTCGAATGCTCCCGTCCCGTCGCATATGGAAAACGCACTGCT
GCCGTCGCGTCGTCTCTCCTGCGGCACACTACACGTACACCGTAATACTCCGTAATACCACAGT
ATGTGCCCATGGATGAATGAATGGATGAATGAATGACCTGAAACGATTTCTCGATCGTATGTAC
ACGAACGAACCCAGGCCTCTTCAAGTCGCTTGTTTCTCTCTACTTCGCTTTTACCACGCACCAC
CTGTTCACCCCACCCACCCACACAGAGTGAGCGGCCGCTATTTGCAGGGGCCTAGCGGGGTAGT
AGATCTGCTGCCCGCCTGCTTCCGTACTGTCTGCCCGTTGGTTTCAGGAGCAGGAGCGGGGTGA
ATAACTTCAG
Number of exons covered
Zm00001d023396_T001:1
Conserved circRNAs
NA
Coding potential
Y
Potential coding position
4674466-4674838(-)
Potential amino acid sequence
MMAMAWFCVLYGNICRWELIIKNPWLAD*
Sponge-miRNAs
NA
circRNA-miRNA-mRNA network
References
Luo et al., 2019

Copyright©2017-2021 Institute of Crop Sciences / Institute of Bioinformatics, Zhejiang University.
Any questions or suggestions, please contact the Fan's lab, bioinplant@zju.edu.cn
For submittion, please click here. Last modified at 2021-03-09.

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