Detail information of PGSC0003DMG400018713_circ_igg.1


General Information
CircRNA Name PGSC0003DMG400018713_circ_igg.1
ID in PlantcircBase stu_circ_001582
Alias chr11:42857200|42861353
Organism Solanum tuberosum
Position chr11: 42857201-42861353  JBrowse»
Reference genome 3.0.38
Type   igg-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing PGSC0003DMG400007344_circ_igg.1 PGSC0003DMG400000409_circ_g.1 PGSC0003DMG400000409_circ_g.2 PGSC0003DMG400000413_circ_g.1 PGSC0003DMG400000413_circ_g.2 PGSC0003DMG400000425_circ_ig.1 PGSC0003DMG403007406_circ_ig.1 PGSC0003DMG402007403_circ_igg.1 PGSC0003DMG401007403_circ_igg.1 PGSC0003DMG403007403_circ_ag.1 PGSC0003DMG400044882_circ_igg.1 PGSC0003DMG400035494_circ_ig.1 PGSC0003DMG400035494_circ_ig.2 PGSC0003DMG400035494_circ_ig.3 PGSC0003DMG400035494_circ_ig.4 PGSC0003DMG400019667_circ_igg.1 PGSC0003DMG400035494_circ_ig.5 PGSC0003DMG401019668_circ_igg.1 PGSC0003DMG403019668_circ_igg.1 PGSC0003DMG401019668_circ_igg.2 PGSC0003DMG401019668_circ_igg.3 PGSC0003DMG400018558_circ_igg.1 PGSC0003DMG400018558_circ_igg.2 PGSC0003DMG400018575_circ_ag.1 PGSC0003DMG400018591_circ_ag.1 PGSC0003DMG401018576_circ_igg.1 PGSC0003DMG402018576_circ_igg.1 PGSC0003DMG402018576_circ_ag.1 PGSC0003DMG400018695_circ_igg.1 PGSC0003DMG400018720_circ_igg.1 PGSC0003DMG400018694_circ_igg.1 PGSC0003DMG400018711_circ_ag.1 PGSC0003DMG402018708_circ_ag.1 PGSC0003DMG402018708_circ_igg.1 PGSC0003DMG402018708_circ_igg.2 PGSC0003DMG402018708_circ_ag.2 PGSC0003DMG402018708_circ_ag.3 PGSC0003DMG402018708_circ_igg.3 PGSC0003DMG402018708_circ_ag.4 PGSC0003DMG402018708_circ_ag.5 PGSC0003DMG401018708_circ_igg.1 PGSC0003DMG401018708_circ_igg.2 PGSC0003DMG401018708_circ_ig.1 PGSC0003DMG401018708_circ_ig.2 PGSC0003DMG401018708_circ_ig.3 PGSC0003DMG400002984_circ_g.1 PGSC0003DMG402002977_circ_ig.1 PGSC0003DMG400002982_circ_igg.1 PGSC0003DMG400002982_circ_igg.2 PGSC0003DMG400002982_circ_igg.3 PGSC0003DMG400002982_circ_igg.4 PGSC0003DMG400002982_circ_igg.5 PGSC0003DMG400002982_circ_igg.6 PGSC0003DMG400027401_circ_igg.1 PGSC0003DMG400002982_circ_ig.1 PGSC0003DMG400003020_circ_ig.1 PGSC0003DMG400027392_circ_igg.1 PGSC0003DMG400027391_circ_igg.1 PGSC0003DMG401027394_circ_ag.1 PGSC0003DMG400027393_circ_ag.1 PGSC0003DMG400027379_circ_ig.1 PGSC0003DMG400027379_circ_ig.2 PGSC0003DMG400027379_circ_ig.3 PGSC0003DMG400027379_circ_ig.4
Support reads NA
Tissues stem
Exon boundary   No-Yes
Splicing signals   CT-CC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGAATTGAGCAAATTATCTTACCCAGTCTTCAGGATCTACATTCAAGGCCCTTAGGACATCTTC
ATCAACTACAACTCCAGAAGCTCCAGCATTATTTACagaatatcaagcctcccatattgtgttt
gtatgaactttgctaaggactcaatgctctgagcatcttgaacatcaagctgatgaaacacagc
attcgaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGAATATCAAGCCTCCCATATTGTGTTTGTATGAACTTTGCTAAGGACTCAATGCTCTGAGCAT
CTTGAACATCAAGCTGATGAAACACAGCATTCGAAAATCCTTGTTCATTCAGCAAGGATGTTGC
TTCAGTTCCTCTCTTTTCGTCTCTGGCTGTTAAGACAACCGTTACACCTGAATTCGCGAGCTGC
TTAATAGTCTCGAAGCCAATTCCCTTGTTTGCTCCTGTAACCACTGCATACTTACAAGCATCTC
CCATCACTTAAGTCCAATTTTTCTAACCTGTAATCCTTTTGAATCCTGTTGGGAGAAGAAGAAA
AAAGAACACTATTTCAAACGAACTAACGCGATAGGAAGAAAGAGGTATGTAGAGACTAATAGTC
CAACTGTTGAAATAACAACCTCGGGGATGTAGTTCCGAAAAAGAGAAATAATGGAAGTACAAGA
AACAACAGATAATAACAAAAACAACATATAGTTATAACATAACATAAACTACAACAAAATAATA
CAATGATCGAGCTAGGTACAAGAAACAATAGATATCAACTAACTCTATCTACCGAGGCTTGAAC
AGATGGAAAGAATCACTTGATCTAAACAGTGTTAAGCAGCAACATCAAAGTAAACAATCAAGAC
CAAAAATCAAAATCCCATTTCAAAGATAAAATATATTGACTTACCTGTAAATGGAGAGTATAGG
GCTAATACTAGTGCTACAAGTAAAAAAAAATCAACAATCTACTATTTAATAAGTAAAAATTTGG
TAAAAAAAATATGTTTTCATGGGTATTATTGTCTAACACTTTAAACTACCTTTTTTTATGGTAG
GCAAACCCATGTGATCCTCTAACTGGTAACTCCTTTATATAGTATCATTATTCATTTCAGTTTG
AATGCATTTCTATGGCAATGTTGTCATTTTTTACTGGCATTATTAAATGTTATGAATTACTGGC
ATTTGCTATTAATGATGGTAATTTCTCCGTCCGTTCACTTTTACTTGTCACATTTGGATTTGAT
ACGCCCATTAACACCTTGATGAATGGTTGGTACCTGTTGTATTGTATTGATAGTTTAGATATAA
CATTTGTTTTGATTGTTACTTAAATTTCATTGTATCATATCATTTAAATCCATCATTAGGTAAC
GACGAACAATATGGTGTGATCTCACCGTTACCTTAATATTTTCTTCTTATTTTATCCTTTAACT
ACCTATCTTTTAATAGTAGCTTTATTCCGTATCCTACTTTTTCTTTTAGATTTATCATTCAAAT
TGTTGATGTGATAGAGAACAATACAATCTATCCAAATGTTGTACTCTTTAAAACATTACAGTAT
GATATAATACAACACATTACTTGATTATTTTATCCTTTGCTTCCCTCATTGTTTCAATTACTAA
TTCAACCAGTAGAACACCAAGCTCAGAAATTCAACCAAAATGCCAAGAGACACTGAAAGAAATA
GTCTTATTTCACGACTTGATCTAAAACATCGTAACTGACCCCAACTTATTTGGGACTGAGGCGT
AGTTATTGTTGTATCTAAAACTCGTCGACTACTGTACGATCAAAGTAGCAACCAGTAGGTCCTC
CATCAGGCAAAAGAGCTAGCATGACAGATCCTTCAGCTCCTTCTTCGACAGGCATTGTTCCTGT
ATGCCAGTTTATATCCGTGTTGACGTATCCAGGATGGACACAATTGATACACATTTTCGGGTAC
TTTCTTGCAAGAATTCGAGTGTAAGCATTGAGTGAGACTTTTGATATGCTATATGCTGGTAGCA
TCATCTGCCAACCATTCACCTCGAGGGCATCTTGTTTCAGATCATGCAAAAAAATTTGCAGAAT
CTTGTCGATTTTATCTTCTGTCAGGTTTTCAACATCTCCTAGCTCCTTTCTCCTCTCCTCATTT
GGTACTCGCTGCATTAGAATGATACAAAATCAATAAGAAATCCTTCTAATATGTCAGAGTTACC
CAGTACTTGTACGTTAGTAGGAGAGTACTTGTACGTTAGTAGGAGATAGCAGGTATCTCATGGA
ATTAGTCCGGATGCAAACAAGTTGGTCCGGACATCATGGTTATCAAAAAAGTATTTGTATGATT
TAGTTTTCGGACTGAAAATGACTCGAGAATTATAAAGTTCTTGTCCTTTGGAAGTTACAATACA
ATCCCTTGAATTATAACAAGCTACCATTAAGAGAAAATCTAGCTTATTTTCTTTCTTCTTTTTA
GATAACGACGGTGTCCAAACAACCTTCTACCTTAAATCATCGCATTAACTAGGTAACTCTGCTC
CCCAATACTTAAGCAAATGTAATCCCTATATTTTGAAAAAGCTAGCATGACTACATCGTCTAAC
GGAAGATAGAAGGTCCTTAAGAGAGTGGTTAGCAAAGATCAGTATAGAGGAAATGGAGATTTGT
TTAATTTAGTTTAAGCTATTACAACAAGTGGTGTAGCAACATACAATGAAAGGTGATCAGTTGA
ACGTCTTTCATAGAAAATTTATACCAAATATATGGTAAAAATTACTTTTTATACATGTATATTA
AATCTTGACCACTCTTAATGAAATTCTCGACTTGACCACTAGTCAACAAGGATAAACTCGACAC
ATCAAACAAAATGAAGGTTTGATTCTCTGATAATATATCAACCAAAATTACAACTAGCCCGAAA
GCTAAGACTTAAAGCACAAAAGAACAAGAATATGTATGTGTTGATAACCAGAGTGATGCTCCAA
AACACATAATTTGTTTCTAAACACTACAACAAGTACTGGAAAATGATAGGCAAAAGCTCTCTAA
ACATATACTGAGCGAATTTGGTCTGGATACTAGGGTACTTTGTTCAACATATTATCATTAAATG
AGCAGCAGGGGCAAAAATTAAAGACCATGGACAAAAAGTAGAAACCACCTCGAAATAGGGGCAA
TCCGTGCAAAAACGTCTACTAACTATGCTCTGGCAATTCTATATAAGGAAACGACCAGAAAGAT
GGTCTTACCTTTAATTCACTTCTAAGGGAGGAGACATTAACAATTCTTGCTGAAGGGGAATTTT
GCAGCAGTGGAAGAAGAGCTTCAGTAACATTCTTAACACCATAGTAATTAGTGTCCAAGCATAA
TTTGGCACTCTCATAAGTTGTTTTCATCGCAACTTGAATGACATTGACAGCTTTCCCTGCTAAC
TGTTTGCAACAACAATCATATAGGTAAATCCCATTTACATCAATATAATAATTCTGATTAGCGT
AAAGCCTGCAGTAGCAATGTAACCAGAGAAAGTATACAAAAAAGACGGTTCTTTTTCTAATATA
TTACTTCATATTACTATATCAGTTGGTGATCCCGACTTAGCGGTCCTTTCATCCATGATGAACT
TTTGGCACTGGTGCGGATATCTTCAATGTATTAAATAAAAAATTCCAATGGCTTTGGCTACTCT
AACTTTCCCGATCACGAATCTTTTCTTTTTTCCTCTTTAAGGAAATCACTACGAAATAAGAAAT
TGTGTTTTCCTAGGTATCAAAAAGAGAGGCTAGGGTGGTGTAGCGATTAGGGATGAGATAAGGA
GGGATAGGATAACCCTCATGCAATGACGGATCCACTCTTGTCCGAGGTTTGTCATTGACACCCC
TTTATTCGAAAATTACATTATATAGATAGGTAAAGAAAAATATAATGCATATAAACTAAATGTT
GAATCCTTCTGAATCTTTCGTATGTTCATTTCTTTATAGTTCGACTCCCCTTAGTAAAAATCAT
GGCTCCCGACACTGTCCTCAGGTAGGTTTGTTGTATCTCATCCTTATGAGTTACAACATAAAAC
AGTTTCTCTAAGACTAGTACAGAGCAAGACCAGAGACCACACAAGGCGACTATCACTTTCCTCA
GATTGTGGACCAAAATTTTCAATTAGCTAGCCCGAAAACATCCTACTCTTTCCAGACGTCATTT
ATGGAATTACAGTGAGTATGTTGTTGCTGTATTGAATCATATATCGCTTCATTACCATGTGAAA
TCCGTAATAAAACAAGAAGCAAGAATTGAGCAAATTATCTTACCCAGTCTTCAGGATCTACATT
CAAGGCCCTTAGGACATCTTCATCAACTACAACTCCAGAAGCTCCAGCATTATTTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.110205233
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2018