Plant Circular RNA Database

Detail information of Os01g0550100_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os01g0550100_circ_g.2
					
						ID in PlantcircBase
						osa_circ_002135
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr1: 20582723-20587206  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os01g0550100						
					
						Parent gene annotation
						
							Similar to Ubiquitin-specific protease 6. (Os01t0550100-01);Simi
lar to Ubiquitin-specific protease 6. (Os01t0550100-02)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os01g0550100_circ_g.3 Os01g0550100_circ_g.4 Os01g0550100_circ_g.5 Os01g0550100_circ_g.6 Os01g0550100_circ_g.7 Os01g0550100_circ_g.8 						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os01t0550100-01:11
Os01t0550100-02:11

General Information
CircRNA Name	Os01g0550100_circ_g.2
ID in PlantcircBase	osa_circ_002135
Alias	NA
Organism	Oryza sativa
Position	chr1: 20582723-20587206 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os01g0550100
Parent gene annotation	Similar to Ubiquitin-specific protease 6. (Os01t0550100-01);Simi lar to Ubiquitin-specific protease 6. (Os01t0550100-02)
Parent gene strand	-
Alternative splicing	Os01g0550100_circ_g.3 Os01g0550100_circ_g.4 Os01g0550100_circ_g.5 Os01g0550100_circ_g.6 Os01g0550100_circ_g.7 Os01g0550100_circ_g.8
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os01t0550100-01:11 Os01t0550100-02:11

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CCACTTGCTCTTCTTCTGGTAGATCCTCTACAAATACTGGTCCTTTCTCTGGAGCTTTCACAAT
CTCATCAGCTGTACCTATCATCATCAATTTTTGACCctcattttcttttgagctgctggccttt
ccttgtgcttttaatccaaacttagcattttctgcatctctcagcatcttcacatgcaaattaa
atgtggtg

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTCATTTTCTTTTGAGCTGCTGGCCTTTCCTTGTGCTTTTAATCCAAACTTAGCATTTTCTGCA
TCTCTCAGCATCTTCACATGCAAATTAAATGTGGTGATCATCAATGGCACAACAGAGCTCAAAC
ATGGAAATGAAAAGAGTAGTAGTACTACCTGTCGGGGAGCTTGGAGTTTTTGTTTCAGTTCATC
TGAGCAAAAGTCATAAACATCCAGTTCCAGCGGGTAATCAACTTTCTGGAAGTAAAAGAAGAAA
GAATATTACAACTTGTTTTCAAACGAAAGAGGTAGAACAAAACTCTGAGCGGACAGTATCAAGA
AGAATCAATCAAGCTTTCCTCACAAGATCATGCAATGATATTATAGGAAGGCATTTGTGGTTAT
GAAAGGAAAAAAAACAAAGAAATCAGAGAACTTTTAGAAAACCATACTATGTAAAATTATTCCA
TAATTACACCTCCAAGCAGCAATTTCAGAGAACCACGATTTTCTTTTTGCAAGAAATACTTTTT
AAGTATTGCCTCCTTGACAGATCACAACCACTTGTAAATCTCACAAGCCTATCCAATAAGGAAA
AGGAAACAGGGTACGTTTCTGAGAGTGATGAGTGGGCCCAAGAGGCCTGGCTCATTGGATGAGA
TGCAAGCAAAAAAAGGTCTATATTTCTCAAAAGTTACTGTAAAGAAGTGTAGTTCTTGCTTAAA
AGTGTTGTTCTATAGTTTTACCAAAGGGAGTATGTTTTTTACTCGAGAAATAAACATACCCGTA
AAATCTTTGCCTTCTGGTTTGATTCCCTTTTCCAAAAGAAACGAACAAACTGCACAGTCAAGTA
CCTGAACACAGAATTGGCATACTTATAATTTCTGAATAAAATAAGAGATAATATAATCAAGAAA
ATATTTAGGTTCTTGCCTAGGCAACTCATTTATTCTTGACTCTCTTGTATAAAGAGCAGTGCGA
CCCAGTGAAGGTGAAGCCTTCTCAAGTTCTGACTTCAAACCCTGCAGGAAAGAATACAAGAATA
ATTACATGGGCCTTCTCATACAAATTCTGAGGTTTTATGCAAGCATAGTATAAAAATAATGTAC
ACATAAAAAACTATCCTGTCAGAATCAGCAATGAGCTACTCGATATAAAATAGAAATTATGAGT
TTAATAATGGTAACATAACTTACATGCTTAAGTCCTTCATGAAGGTGGTTTACATCATGAGATA
TATGACACTTCAAAGAATAAACTGATTCTCTCTCTAAACTCTCTTCACCACTTTCTGCACAATG
GACCCTGCAAATAGAAGCCAACATTAATAAATAGAAGCACACTGGAGCATTGTCATCGTGCTTA
TGAACAAATAGTTTTTTTTAATTCAATACAGGTAACTAGTTCTGCTGCCTCGGGAATAAAATGT
CAAATGAGTGTCCTCATCTGACATGACATCAGAAGACGGCACAAAAATTGTGCATAAAAAAGAT
GGAAAAAACCATCAGGTCTACTTGTGGTGGATATGCTAAAAGTTTTAAGCAGGGATCCAAGCTC
TATATTACTAGTACCATTTTGGAAATGCACCGACAAACTAGCACAATCAGCAAAGATCCATAAA
CAGAAGAAACCACAACAGAATTGTTAACTCATAGTGAACTGTATGATACAGTACAGTACCTTTG
TACAACAGAAAAGAACACACCCCCCCAATTAAAACAGATGAGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGAGAGAGAGAGAGAGAGAGAGAACCTGCTCACGAGATCAATCCCAAAAAGTTCCTTCAT
TTGACCAGCAGGAGGTTCACTACCAAAAAAGACAAAATGGTAAGCGGAGCAGCCAAACACTACT
GTGTACTCAGAGAGAGAGGGAGGAAAAAGGGAAGGGGGGGGGGAGGGGGGAGCATCCCCAGGAA
AACAAACATCACTCCACAATTGCATATGAGCTGTTAGGTGAATAACTGCAATAAATTACCTTGT
TTCTGATGTAAGAGTTTGAGAAAGTGTATACACCAATTGGGTCCAGCATTCTTCTGCATCCTGC
AATTTGTTCAAGTGAACAATATTTAATCATACAGATAAACAGTAGAAAAACTTAAAATTTAATC
ATAGGTGAACCAAACAAACCTGTTGCATATAAACATTATTTTGTTGTTGCGCAAACTGGGGATA
CTTTTTACGCAGCGTCTGCTCAAGTGTAGATCAAACAAAAAGTTAGTACAAAAAATCCAAGCAT
TATAAATTATAGTTTTTCCCAAAACATTTAAACCTTGTAGACAAACTCATCTAGATATCCTCGA
TCTATATGCTACAATGTGGCAAAACATAAAACCAAAACAGTAAAGAAACTGGCATTCAGAGCCA
CCAAAAACAGCTTGACATGGAAGTCCATTGGGAATTGGAAGAATGGCAGTTGTTTTTCTAATCA
AACCAAAAATGTTAAAACAATGTCAAACTTCATTGGGGTCCACATAGAACTGTCAAGCCCTGAA
TTATAAATTTTGAATTTTTTTTTAACTTAAGTAGATTGCTATCTCAAAATAGATATTTCATGCC
AAAATTTCATTGTGTTCATGTGGCCCCACCAGAAAAAAAAAAGGCTACAATCACCTTTCTACCA
AAGGGATGTCACGAAATTCAGTTCAAGTAATTTCATATAAACATGTCATTCCTTGTAAATACTC
AAATAATTACAACTCAAGTTCCACTCGAGCATACACATAGGAAAACAGTATCAAATTTTGTATT
AGAAATACATATAGTTGTTATGATGGACTTTTCATTTCATACAGCAGTTCATGGTTTCCAACTT
TAATAGAAAACTACAAGCATCATTTTCTATAATGATATGCCAGCAAAAATGTAGTGTCATGAAA
CTCCTTTGCATCAGAAATCTTCTTTTACATCAGAAATCTACTGATATCATTTTCATGTAGTTAA
TCTACTCTAGATACTTAGAACATATAATAGAAGTATTGTTCTATTTTTTTGACCTGACCCATGC
AACAACAGCCTACATATAAAAAAGAATATTTCTTATCTAATTTGTGAAGATGTCATAAATAGAA
CAGTAACATAAAAGGAGCTCTGGAGCTCTCCTAATCACAGAAACGAATTGAAGATTCTCTAGCT
TTAGATGTAATGGCCAAATGGGGTAAGCTGAATGCTGACCTGTAAGAAGAGTAGAGGTGCAACA
GGCCGAACACTTTGATCAAGCTCTCCGAAAGTATTACGAGTTGCAACAGTCAAATTATGGGAGG
CTTGGTCAACACCATTACCCCTCACATTATCTGAATAACTGCACAAGTAAAACATATGAGTTAG
CCAAGAAGAAATTCCTTTCTTCAAAACTTACTTCAAAGCAATTTTCAGTGGAACCTCAATAAAG
CTGACTTCAGCTCTGGAACAGAATGCAGGCACTGCAAAGTGGAATTCATGTAACATGTATTCCC
CAAGTTATAAAGACCAGCACTGTGTCCCTGAAATTCCAAAGAGAAATCTCACTTGCAGCACAGA
TTAAGAACACCAAAATAAGACCAACATGCTTATGCCAAATATAATAGCGCTCTTAAGCAATTTG
AATTTTTTGACATTGCGAATTTATTACAACATAAGATATCTATAACAACAATATCACTTTAGCT
TATCCGCAATCACAATTTCCACTCTAGATACCATGATTATATTGATTCTTGATTAATTTAAGCA
TATAAGATACATTAAGCAGGTTGTTTCAGGAATTATGCATGACGAGCTGTCGAATGGCAATGGA
AAGACAATAGCATATGTTCTTAACACATCTATGTTAACAGATAACACTGCAAGTGTACTGGGTA
TTTGTTGTCTCCAGTCATTTATCTTGGTTTGCAGACAAAAGTGTTATGGTTCATACGGACATAT
GATATTAGACAAATTTATTGAGTTGTTATTCTGAGAGGCCATGCGCCCATGCAAGGTTGCCACT
CCTAATAAATTTCAGAACAGATTAACCAAATACCCATGCATTGCAACAATCGAGAGCAAGTATA
TTATAAATTCTGAACTCAAAAGAAACTATATACTCCCACCGTCCCAATATAAGTGCAGCCACAG
TTCAAATTTGAACTACACAGCTGCAGTTATTTTGGGACGGAGGGAGTACTTTCCAATTGTACAT
CAATCCCCAAATGACATAATTATACAGAGAAGATTCAACTAATAAAAATATGTATGCATATATC
TATGCAACTAATAAAGACATGTATGCATATAGTTATGCATGGAAGATCCCATAGTAGTAGACTA
GTAGTGGGTTGGCGAACTCGCCGCCACCATAACTACTAGCTTCTTTTATTATAGTAGAGATAAG
CATAAATTGAGAGGTCAAACGCACCAGTGCAACCACTTGCTCTTCTTCTGGTAGATCCTCTACA
AATACTGGTCCTTTCTCTGGAGCTTTCACAATCTCATCAGCTGTACCTATCATCATCAATTTTT
GACC
						
					

			
		

Sequences
Splice junction sequence	CCACTTGCTCTTCTTCTGGTAGATCCTCTACAAATACTGGTCCTTTCTCTGGAGCTTTCACAAT CTCATCAGCTGTACCTATCATCATCAATTTTTGACCctcattttcttttgagctgctggccttt ccttgtgcttttaatccaaacttagcattttctgcatctctcagcatcttcacatgcaaattaa atgtggtg
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTCATTTTCTTTTGAGCTGCTGGCCTTTCCTTGTGCTTTTAATCCAAACTTAGCATTTTCTGCA TCTCTCAGCATCTTCACATGCAAATTAAATGTGGTGATCATCAATGGCACAACAGAGCTCAAAC ATGGAAATGAAAAGAGTAGTAGTACTACCTGTCGGGGAGCTTGGAGTTTTTGTTTCAGTTCATC TGAGCAAAAGTCATAAACATCCAGTTCCAGCGGGTAATCAACTTTCTGGAAGTAAAAGAAGAAA GAATATTACAACTTGTTTTCAAACGAAAGAGGTAGAACAAAACTCTGAGCGGACAGTATCAAGA AGAATCAATCAAGCTTTCCTCACAAGATCATGCAATGATATTATAGGAAGGCATTTGTGGTTAT GAAAGGAAAAAAAACAAAGAAATCAGAGAACTTTTAGAAAACCATACTATGTAAAATTATTCCA TAATTACACCTCCAAGCAGCAATTTCAGAGAACCACGATTTTCTTTTTGCAAGAAATACTTTTT AAGTATTGCCTCCTTGACAGATCACAACCACTTGTAAATCTCACAAGCCTATCCAATAAGGAAA AGGAAACAGGGTACGTTTCTGAGAGTGATGAGTGGGCCCAAGAGGCCTGGCTCATTGGATGAGA TGCAAGCAAAAAAAGGTCTATATTTCTCAAAAGTTACTGTAAAGAAGTGTAGTTCTTGCTTAAA AGTGTTGTTCTATAGTTTTACCAAAGGGAGTATGTTTTTTACTCGAGAAATAAACATACCCGTA AAATCTTTGCCTTCTGGTTTGATTCCCTTTTCCAAAAGAAACGAACAAACTGCACAGTCAAGTA CCTGAACACAGAATTGGCATACTTATAATTTCTGAATAAAATAAGAGATAATATAATCAAGAAA ATATTTAGGTTCTTGCCTAGGCAACTCATTTATTCTTGACTCTCTTGTATAAAGAGCAGTGCGA CCCAGTGAAGGTGAAGCCTTCTCAAGTTCTGACTTCAAACCCTGCAGGAAAGAATACAAGAATA ATTACATGGGCCTTCTCATACAAATTCTGAGGTTTTATGCAAGCATAGTATAAAAATAATGTAC ACATAAAAAACTATCCTGTCAGAATCAGCAATGAGCTACTCGATATAAAATAGAAATTATGAGT TTAATAATGGTAACATAACTTACATGCTTAAGTCCTTCATGAAGGTGGTTTACATCATGAGATA TATGACACTTCAAAGAATAAACTGATTCTCTCTCTAAACTCTCTTCACCACTTTCTGCACAATG GACCCTGCAAATAGAAGCCAACATTAATAAATAGAAGCACACTGGAGCATTGTCATCGTGCTTA TGAACAAATAGTTTTTTTTAATTCAATACAGGTAACTAGTTCTGCTGCCTCGGGAATAAAATGT CAAATGAGTGTCCTCATCTGACATGACATCAGAAGACGGCACAAAAATTGTGCATAAAAAAGAT GGAAAAAACCATCAGGTCTACTTGTGGTGGATATGCTAAAAGTTTTAAGCAGGGATCCAAGCTC TATATTACTAGTACCATTTTGGAAATGCACCGACAAACTAGCACAATCAGCAAAGATCCATAAA CAGAAGAAACCACAACAGAATTGTTAACTCATAGTGAACTGTATGATACAGTACAGTACCTTTG TACAACAGAAAAGAACACACCCCCCCAATTAAAACAGATGAGTGTGTGTGTGTGTGTGTGTGTG TGTGTGAGAGAGAGAGAGAGAGAGAGAACCTGCTCACGAGATCAATCCCAAAAAGTTCCTTCAT TTGACCAGCAGGAGGTTCACTACCAAAAAAGACAAAATGGTAAGCGGAGCAGCCAAACACTACT GTGTACTCAGAGAGAGAGGGAGGAAAAAGGGAAGGGGGGGGGGAGGGGGGAGCATCCCCAGGAA AACAAACATCACTCCACAATTGCATATGAGCTGTTAGGTGAATAACTGCAATAAATTACCTTGT TTCTGATGTAAGAGTTTGAGAAAGTGTATACACCAATTGGGTCCAGCATTCTTCTGCATCCTGC AATTTGTTCAAGTGAACAATATTTAATCATACAGATAAACAGTAGAAAAACTTAAAATTTAATC ATAGGTGAACCAAACAAACCTGTTGCATATAAACATTATTTTGTTGTTGCGCAAACTGGGGATA CTTTTTACGCAGCGTCTGCTCAAGTGTAGATCAAACAAAAAGTTAGTACAAAAAATCCAAGCAT TATAAATTATAGTTTTTCCCAAAACATTTAAACCTTGTAGACAAACTCATCTAGATATCCTCGA TCTATATGCTACAATGTGGCAAAACATAAAACCAAAACAGTAAAGAAACTGGCATTCAGAGCCA CCAAAAACAGCTTGACATGGAAGTCCATTGGGAATTGGAAGAATGGCAGTTGTTTTTCTAATCA AACCAAAAATGTTAAAACAATGTCAAACTTCATTGGGGTCCACATAGAACTGTCAAGCCCTGAA TTATAAATTTTGAATTTTTTTTTAACTTAAGTAGATTGCTATCTCAAAATAGATATTTCATGCC AAAATTTCATTGTGTTCATGTGGCCCCACCAGAAAAAAAAAAGGCTACAATCACCTTTCTACCA AAGGGATGTCACGAAATTCAGTTCAAGTAATTTCATATAAACATGTCATTCCTTGTAAATACTC AAATAATTACAACTCAAGTTCCACTCGAGCATACACATAGGAAAACAGTATCAAATTTTGTATT AGAAATACATATAGTTGTTATGATGGACTTTTCATTTCATACAGCAGTTCATGGTTTCCAACTT TAATAGAAAACTACAAGCATCATTTTCTATAATGATATGCCAGCAAAAATGTAGTGTCATGAAA CTCCTTTGCATCAGAAATCTTCTTTTACATCAGAAATCTACTGATATCATTTTCATGTAGTTAA TCTACTCTAGATACTTAGAACATATAATAGAAGTATTGTTCTATTTTTTTGACCTGACCCATGC AACAACAGCCTACATATAAAAAAGAATATTTCTTATCTAATTTGTGAAGATGTCATAAATAGAA CAGTAACATAAAAGGAGCTCTGGAGCTCTCCTAATCACAGAAACGAATTGAAGATTCTCTAGCT TTAGATGTAATGGCCAAATGGGGTAAGCTGAATGCTGACCTGTAAGAAGAGTAGAGGTGCAACA GGCCGAACACTTTGATCAAGCTCTCCGAAAGTATTACGAGTTGCAACAGTCAAATTATGGGAGG CTTGGTCAACACCATTACCCCTCACATTATCTGAATAACTGCACAAGTAAAACATATGAGTTAG CCAAGAAGAAATTCCTTTCTTCAAAACTTACTTCAAAGCAATTTTCAGTGGAACCTCAATAAAG CTGACTTCAGCTCTGGAACAGAATGCAGGCACTGCAAAGTGGAATTCATGTAACATGTATTCCC CAAGTTATAAAGACCAGCACTGTGTCCCTGAAATTCCAAAGAGAAATCTCACTTGCAGCACAGA TTAAGAACACCAAAATAAGACCAACATGCTTATGCCAAATATAATAGCGCTCTTAAGCAATTTG AATTTTTTGACATTGCGAATTTATTACAACATAAGATATCTATAACAACAATATCACTTTAGCT TATCCGCAATCACAATTTCCACTCTAGATACCATGATTATATTGATTCTTGATTAATTTAAGCA TATAAGATACATTAAGCAGGTTGTTTCAGGAATTATGCATGACGAGCTGTCGAATGGCAATGGA AAGACAATAGCATATGTTCTTAACACATCTATGTTAACAGATAACACTGCAAGTGTACTGGGTA TTTGTTGTCTCCAGTCATTTATCTTGGTTTGCAGACAAAAGTGTTATGGTTCATACGGACATAT GATATTAGACAAATTTATTGAGTTGTTATTCTGAGAGGCCATGCGCCCATGCAAGGTTGCCACT CCTAATAAATTTCAGAACAGATTAACCAAATACCCATGCATTGCAACAATCGAGAGCAAGTATA TTATAAATTCTGAACTCAAAAGAAACTATATACTCCCACCGTCCCAATATAAGTGCAGCCACAG TTCAAATTTGAACTACACAGCTGCAGTTATTTTGGGACGGAGGGAGTACTTTCCAATTGTACAT CAATCCCCAAATGACATAATTATACAGAGAAGATTCAACTAATAAAAATATGTATGCATATATC TATGCAACTAATAAAGACATGTATGCATATAGTTATGCATGGAAGATCCCATAGTAGTAGACTA GTAGTGGGTTGGCGAACTCGCCGCCACCATAACTACTAGCTTCTTTTATTATAGTAGAGATAAG CATAAATTGAGAGGTCAAACGCACCAGTGCAACCACTTGCTCTTCTTCTGGTAGATCCTCTACA AATACTGGTCCTTTCTCTGGAGCTTTCACAATCTCATCAGCTGTACCTATCATCATCAATTTTT GACC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.108951686

Conservation Information
Conserved circRNAs	NA
PMCS	0.108951686

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							20586170-20582772(+)
20587196-20582725(-)
						
					

						Potential amino acid sequence
						
							MYSPSYKDQHCVPVQPLALLLVDPLQILVLSLELSQSHQLYLSSSIFDPHFLLSCWPFLVLLIQ
T*(+)
MMIGTADEIVKAPEKGPVFVEDLPEEEQVVALGHSAGLYNLGNTCYMNSTLQCLHSVPELKSAL
LSYSDNVRGNGVDQASHNLTVATRNTFGELDQSVRPVAPLLFLQTLRKKYPQFAQQQNNVYMQQ
DAEECWTQLVYTLSQTLTSETSEPPAGQMKELFGIDLVSRVHCAESGEESLERESVYSLKCHIS
HDVNHLHEGLKHGLKSELEKASPSLGRTALYTRESRINELPRYLTVQFVRFFWKRESNQKAKIL
RKVDYPLELDVYDFCSDELKQKLQAPRQMLRDAENAKFGLKAQGKASSSKENEGQKLMMIGTAD
EIVKAPEKGPVFVEDLPEEEQVVALGHSAGLYNLGNTCYMNSTLQCLHSVPELKSALLSYSDNV
RGNGVDQASHNLTVATRNTFGELDQSVRPVAPLLFLQTLRKKYPQFAQQQNNVYMQQDAEECWT
QLVYTLSQTLTSETSEPPAGQMKELFGIDLVSRVHCAESGEESLERESVYSLKCHISHDVNHLH
EGLKHGLKSELEKASPSLGRTALYTRESRINELPRYLTVQFVRFFWKRESNQKAKILRKVDYPL
ELDVYDFCSDELKQKLQAPRQMLRDAENAKFGLKAQGKASSSKENEGQKLMMIGTADEIVKAPE
KGPVFVEDLPEEEQVVALGHSAGLYNLGNTCYMNSTLQCLHSVPELKSALLSYSDNVRGNGVDQ
ASHNLTVATRNTFGELDQSVRPVAPLLFLQTLRKKYPQFAQQQNNVYMQQDAEECWTQLVYTLS
QTLTSETSEPPAGQMKELFGIDLVSRVHCAESGEESLERESVYSLKCHISHDVNHLHEGLKHGL
KSELEKASPSLGRTALYTRESRINELPRYLTVQFVRFFWKRESNQKAKILRKVDYPLELDVYDF
CSDELKQKLQAPRQMLRDAENAKFGLKAQGKASSSKENEGQKLMMIGTADEIVKAPEKGPVFVE
DLPEEEQVVALGHSAGLYNLGNTCYMNSTLQCLHSVPELKSALLSYSDNVRGNGVDQASHNLTV
ATRNTFGELDQSVRPVAPLLFLQTLRKKYPQFAQQQNNVYMQQDAEECWTQLVYTLSQTLTSET
SEPPAGQMKELFGIDLVSRVHCAESGEESLERESVYSLKCHISHDVNHLHEGLKHGLKSELEKA
SPSLGRTALYTRESRINELPRYLTVQFVRFFWKRESNQKAKILRKVDYPLELDVYDFCSDELKQ
KLQAPRQMLRDAENAKFGLKAQGKASSSKENE(-)
						
					

						Sponge-miRNAs
						
							osa-miR2919 						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	20586170-20582772(+) 20587196-20582725(-)
Potential amino acid sequence	MYSPSYKDQHCVPVQPLALLLVDPLQILVLSLELSQSHQLYLSSSIFDPHFLLSCWPFLVLLIQ T*(+) MMIGTADEIVKAPEKGPVFVEDLPEEEQVVALGHSAGLYNLGNTCYMNSTLQCLHSVPELKSAL LSYSDNVRGNGVDQASHNLTVATRNTFGELDQSVRPVAPLLFLQTLRKKYPQFAQQQNNVYMQQ DAEECWTQLVYTLSQTLTSETSEPPAGQMKELFGIDLVSRVHCAESGEESLERESVYSLKCHIS HDVNHLHEGLKHGLKSELEKASPSLGRTALYTRESRINELPRYLTVQFVRFFWKRESNQKAKIL RKVDYPLELDVYDFCSDELKQKLQAPRQMLRDAENAKFGLKAQGKASSSKENEGQKLMMIGTAD EIVKAPEKGPVFVEDLPEEEQVVALGHSAGLYNLGNTCYMNSTLQCLHSVPELKSALLSYSDNV RGNGVDQASHNLTVATRNTFGELDQSVRPVAPLLFLQTLRKKYPQFAQQQNNVYMQQDAEECWT QLVYTLSQTLTSETSEPPAGQMKELFGIDLVSRVHCAESGEESLERESVYSLKCHISHDVNHLH EGLKHGLKSELEKASPSLGRTALYTRESRINELPRYLTVQFVRFFWKRESNQKAKILRKVDYPL ELDVYDFCSDELKQKLQAPRQMLRDAENAKFGLKAQGKASSSKENEGQKLMMIGTADEIVKAPE KGPVFVEDLPEEEQVVALGHSAGLYNLGNTCYMNSTLQCLHSVPELKSALLSYSDNVRGNGVDQ ASHNLTVATRNTFGELDQSVRPVAPLLFLQTLRKKYPQFAQQQNNVYMQQDAEECWTQLVYTLS QTLTSETSEPPAGQMKELFGIDLVSRVHCAESGEESLERESVYSLKCHISHDVNHLHEGLKHGL KSELEKASPSLGRTALYTRESRINELPRYLTVQFVRFFWKRESNQKAKILRKVDYPLELDVYDF CSDELKQKLQAPRQMLRDAENAKFGLKAQGKASSSKENEGQKLMMIGTADEIVKAPEKGPVFVE DLPEEEQVVALGHSAGLYNLGNTCYMNSTLQCLHSVPELKSALLSYSDNVRGNGVDQASHNLTV ATRNTFGELDQSVRPVAPLLFLQTLRKKYPQFAQQQNNVYMQQDAEECWTQLVYTLSQTLTSET SEPPAGQMKELFGIDLVSRVHCAESGEESLERESVYSLKCHISHDVNHLHEGLKHGLKSELEKA SPSLGRTALYTRESRINELPRYLTVQFVRFFWKRESNQKAKILRKVDYPLELDVYDFCSDELKQ KLQAPRQMLRDAENAKFGLKAQGKASSSKENE(-)
Sponge-miRNAs	osa-miR2919
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os01g0550100_circ_g.2

Address

Any questions?

Supported by