Plant Circular RNA Database

Detail information of 1_circ_ag.9

			
						 General Information
					
						CircRNA Name
						1_circ_ag.9
					
						ID in PlantcircBase
						ath_circ_010097
					
						Alias
						1:27847591-27850376
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr1: 27847591-27850376  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							ag-circRNA							
									
						Identification method
						find_circ; CIRI2
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							1_circ_ag.7 1_circ_ag.8 1_circ_ag.10 1_circ_ag.11 1_circ_ag.12 AT1G74060_circ_g.1 AT1G74060_circ_g.2 AT1G74060_circ_g.3 AT1G74060_circ_g.4 						
					
						Support reads
						7
					
						Tissues
						flower
					
						Exon boundary  
						
							NA-NA							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	1_circ_ag.9
ID in PlantcircBase	ath_circ_010097
Alias	1:27847591-27850376
Organism	Arabidpsis thaliana
Position	chr1: 27847591-27850376 JBrowse»
Reference genome	TAIR10.38
Type	ag-circRNA
Identification method	find_circ; CIRI2
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	1_circ_ag.7 1_circ_ag.8 1_circ_ag.10 1_circ_ag.11 1_circ_ag.12 AT1G74060_circ_g.1 AT1G74060_circ_g.2 AT1G74060_circ_g.3 AT1G74060_circ_g.4
Support reads	7
Tissues	flower
Exon boundary	NA-NA "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AAATGAGAACCAAATGACTCTTAGAGAAAGACAAGAAGAATGTTTGGGATACCTCTTTCTCAGC
CTCGAAGAACTCTCCTTCAGTCTTCTTCTTTTTCTTctctttctcagcctcaaagaactctcct
tctgtcttcttctttttcttctcagcaaccttgccaaagtacttatcatcgaatttatcgaggg
tgactcca

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTCTTTCTCAGCCTCAAAGAACTCTCCTTCTGTCTTCTTCTTTTTCTTCTCAGCAACCTTGCCA
AAGTACTTATCATCGAATTTATCGAGGGTGACTCCAGAAATGTCAACCTTTGTGGAAGTGCCAA
TCACATAGGCCTGGTTAACACGTCTCAAAGGAACACCATTGATCTTGAATGGTCCTAAAGAATT
GTTAAAAAAAGGATGAACAATTCAGATGGTAAAAATCAGTGAATGAGCTTCGCTTCAAATGATT
TATAGGAGACAAGTTCATGAGAACAGATAGAGAATAACTCACCAGTCACAAGAAGCAAACCAGA
GGCAAGCTGCTTAAGGAAGACAACTCTCTTTCCCTTGAACCTACCAGCAAGGATAATCAACACT
GTACCTGGAGTAATGCTAGCTCTGCAATACAGATATAAGAAGATCGGATCATGTTGGAAACATA
TATAAGATCTATTGAAGACGTTACAGAGCATAGACATTAAATTTGGTATACAAATGAAAATCAA
ATTCGCTTTTTTTCTTTTTACTATCAACCTGAGACAAGCTTAATCATACTAATAACAGTAATGT
ATAAGAAAACTAGATGTATTCACAGAAATTATGAACCTTTTGAAATTCAAGTTTAACTCCACTA
ACAATCTTCACAAACCAATGCATTTCAACTATTCTTCAAATATCCTAGAGACAAATGATTTACA
CAATGCAAAATTTGGACACTTTTCCAGCAGATATTCAAATCTTATACAAACCCACTTAGCAAAC
GAGCCAAAGAAATCAACCAAACACATGGAAGATAATTGCATCGATACCAGTGTCAGACTAAGTA
CCTGAGCTTGGTTGGTTTTGCCGTGCGCCTGTTGGGGAGAGGTTTCTTAACATCTTCAGCTGGA
TAGAACTTCGGTGGCTTCTCCACCGGAGCATCAACCTTAGATTTAGCGTCGTGACGTGGGAAAA
CGCCTCCATTTTTGGCCTTGATAGCCCACAAACCTCTCTTATGGTACATCTGGGATCTCGAGTA
TTTACCAACACCCCTGATCAGATCAGGGTTTCTGTTGACCTTCGGGGTCCTCTGTTTCGCCGGC
ATGGTTCTCTCTGTCGTAATGAATCAAGGAAAAATTTTCCGGCTGAGAGTGGATAGAGGAGAGA
GTTGAGGCTGAGGATAGGTGAATTTGAAGACACTGAAACCCTAATTAAATTTTAGGGCTTTCTT
GGGCTCATGGGCTTTACAATTATATCGGCCTTTTAATGTGGACCGTAACATGCATAATAGGATT
TGTTTTTTCTTACAACTTTGTAGTATTAAATCTTTTCACCTAAAACTATTTTGACAGGATGATA
AAAAAATCAGAGTTAGAGAGTAGTTTATCTAAAAACTCAGGCTAATAATCCCCACACAATTTGA
CCAACGCCAAAATCAGAGCAAGACGATTCCTTCACCTGTAAGAGTGCAATGGATCACATATATC
ATTTATAATTAGTTTGAGACGCTTTTGATGAAGCTGATGAGGATTTCTCCGCTTTATTCACCTT
TACATGTCCTTCTTCAACAAACATTGGTCGGCTTAAAAGCTCTTCAAAAGATCAATGTGCACAT
GCCTATGTATATATATACTAATGACCCCGTTACTCAATCAACAAATATTGAATCTTGATCACCG
AAAACCAAAATTTCATTAGATTCAATGGCTATGGCTAGTAGTAGTAGCAGCTCGTCATTGTTTC
CTATCCAACAACAACCTCAACAACAATTAGGAGGCAATGAGATCACACCTATGGCTACCAATGC
CAATCTAATCGCAGCACCAAACGCTCCAAACCATTACTCTTCCAGCTCCATTGGACCCTTCTTC
GCTGTCATATCTGTTCTCATCATTCTTGCTGTTCTCTCCTGCTTCTTGGGTCGATTCTGCGCAC
GGAGCCGCCAGAGAACTGGTCTAGTGGCTGAAGTCAATCCGTTGGAGATGATAAAGAGTGGTGG
GCTTTTAGGTTGGCTGAGACGAAAATGGAGACGGTGTTTGGCCGGAGATGTTGAGGCCGGAGCT
AAAGTTGCTGATTGTGCTAGCAAAGAAACACCTAAAGATAATGATCAAATTCGTCTAGAAGCAC
CTCCAGCTTGATCTCGGTGCATGTGACAGAGACTAGTAATAAGAGTTTCAATATTCGAAGTAGA
TTGTAAGCTAAACTATATCATTATTGCAATGTTATTTTCAATTCTCAATTTCATCACTTCGTCA
TGACTTAAGCATTACTAGAATCTTGTGAAAAGTTCTCCTTCAAAAACAGGATTGATAAATTATC
CATATAAGACAGAAATCCAGATAGCAGCAGCCAAGATTTTATGTCTCTGGTCAGTGGACGAGAA
CAGAACCAACCAGTTGGAGTGTAAAACTTCAGGAGACAGATACACTAGAAACCTCAGAAAAAAA
GTAATGAAATCTAGAAAACAAGCTCATGGGGCTTCATTCCTTGTTTCAATGAAAACCTTGCTCC
GAGGTAAGTCTTCAACTCTGGAACTGCTTCAATAGCTTTGATCAAAGCTGCGTCCACGGCTTTC
TGGTCATCTTTCTTTCCCTGTGGAATCTCTTTCTTCTCCTGCGGAAGGAAAAAAAGTATATGGA
GGTCACGCATAGCTTTTAATTTGGGTAGTGTATAAAGGAGAGAACTTTAATCGTCTATTACAAA
ATGAGAACCAAATGACTCTTAGAGAAAGACAAGAAGAATGTTTGGGATACCTCTTTCTCAGCCT
CGAAGAACTCTCCTTCAGTCTTCTTCTTTTTCTT
						
					

			
		

Sequences
Splice junction sequence	AAATGAGAACCAAATGACTCTTAGAGAAAGACAAGAAGAATGTTTGGGATACCTCTTTCTCAGC CTCGAAGAACTCTCCTTCAGTCTTCTTCTTTTTCTTctctttctcagcctcaaagaactctcct tctgtcttcttctttttcttctcagcaaccttgccaaagtacttatcatcgaatttatcgaggg tgactcca
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTCTTTCTCAGCCTCAAAGAACTCTCCTTCTGTCTTCTTCTTTTTCTTCTCAGCAACCTTGCCA AAGTACTTATCATCGAATTTATCGAGGGTGACTCCAGAAATGTCAACCTTTGTGGAAGTGCCAA TCACATAGGCCTGGTTAACACGTCTCAAAGGAACACCATTGATCTTGAATGGTCCTAAAGAATT GTTAAAAAAAGGATGAACAATTCAGATGGTAAAAATCAGTGAATGAGCTTCGCTTCAAATGATT TATAGGAGACAAGTTCATGAGAACAGATAGAGAATAACTCACCAGTCACAAGAAGCAAACCAGA GGCAAGCTGCTTAAGGAAGACAACTCTCTTTCCCTTGAACCTACCAGCAAGGATAATCAACACT GTACCTGGAGTAATGCTAGCTCTGCAATACAGATATAAGAAGATCGGATCATGTTGGAAACATA TATAAGATCTATTGAAGACGTTACAGAGCATAGACATTAAATTTGGTATACAAATGAAAATCAA ATTCGCTTTTTTTCTTTTTACTATCAACCTGAGACAAGCTTAATCATACTAATAACAGTAATGT ATAAGAAAACTAGATGTATTCACAGAAATTATGAACCTTTTGAAATTCAAGTTTAACTCCACTA ACAATCTTCACAAACCAATGCATTTCAACTATTCTTCAAATATCCTAGAGACAAATGATTTACA CAATGCAAAATTTGGACACTTTTCCAGCAGATATTCAAATCTTATACAAACCCACTTAGCAAAC GAGCCAAAGAAATCAACCAAACACATGGAAGATAATTGCATCGATACCAGTGTCAGACTAAGTA CCTGAGCTTGGTTGGTTTTGCCGTGCGCCTGTTGGGGAGAGGTTTCTTAACATCTTCAGCTGGA TAGAACTTCGGTGGCTTCTCCACCGGAGCATCAACCTTAGATTTAGCGTCGTGACGTGGGAAAA CGCCTCCATTTTTGGCCTTGATAGCCCACAAACCTCTCTTATGGTACATCTGGGATCTCGAGTA TTTACCAACACCCCTGATCAGATCAGGGTTTCTGTTGACCTTCGGGGTCCTCTGTTTCGCCGGC ATGGTTCTCTCTGTCGTAATGAATCAAGGAAAAATTTTCCGGCTGAGAGTGGATAGAGGAGAGA GTTGAGGCTGAGGATAGGTGAATTTGAAGACACTGAAACCCTAATTAAATTTTAGGGCTTTCTT GGGCTCATGGGCTTTACAATTATATCGGCCTTTTAATGTGGACCGTAACATGCATAATAGGATT TGTTTTTTCTTACAACTTTGTAGTATTAAATCTTTTCACCTAAAACTATTTTGACAGGATGATA AAAAAATCAGAGTTAGAGAGTAGTTTATCTAAAAACTCAGGCTAATAATCCCCACACAATTTGA CCAACGCCAAAATCAGAGCAAGACGATTCCTTCACCTGTAAGAGTGCAATGGATCACATATATC ATTTATAATTAGTTTGAGACGCTTTTGATGAAGCTGATGAGGATTTCTCCGCTTTATTCACCTT TACATGTCCTTCTTCAACAAACATTGGTCGGCTTAAAAGCTCTTCAAAAGATCAATGTGCACAT GCCTATGTATATATATACTAATGACCCCGTTACTCAATCAACAAATATTGAATCTTGATCACCG AAAACCAAAATTTCATTAGATTCAATGGCTATGGCTAGTAGTAGTAGCAGCTCGTCATTGTTTC CTATCCAACAACAACCTCAACAACAATTAGGAGGCAATGAGATCACACCTATGGCTACCAATGC CAATCTAATCGCAGCACCAAACGCTCCAAACCATTACTCTTCCAGCTCCATTGGACCCTTCTTC GCTGTCATATCTGTTCTCATCATTCTTGCTGTTCTCTCCTGCTTCTTGGGTCGATTCTGCGCAC GGAGCCGCCAGAGAACTGGTCTAGTGGCTGAAGTCAATCCGTTGGAGATGATAAAGAGTGGTGG GCTTTTAGGTTGGCTGAGACGAAAATGGAGACGGTGTTTGGCCGGAGATGTTGAGGCCGGAGCT AAAGTTGCTGATTGTGCTAGCAAAGAAACACCTAAAGATAATGATCAAATTCGTCTAGAAGCAC CTCCAGCTTGATCTCGGTGCATGTGACAGAGACTAGTAATAAGAGTTTCAATATTCGAAGTAGA TTGTAAGCTAAACTATATCATTATTGCAATGTTATTTTCAATTCTCAATTTCATCACTTCGTCA TGACTTAAGCATTACTAGAATCTTGTGAAAAGTTCTCCTTCAAAAACAGGATTGATAAATTATC CATATAAGACAGAAATCCAGATAGCAGCAGCCAAGATTTTATGTCTCTGGTCAGTGGACGAGAA CAGAACCAACCAGTTGGAGTGTAAAACTTCAGGAGACAGATACACTAGAAACCTCAGAAAAAAA GTAATGAAATCTAGAAAACAAGCTCATGGGGCTTCATTCCTTGTTTCAATGAAAACCTTGCTCC GAGGTAAGTCTTCAACTCTGGAACTGCTTCAATAGCTTTGATCAAAGCTGCGTCCACGGCTTTC TGGTCATCTTTCTTTCCCTGTGGAATCTCTTTCTTCTCCTGCGGAAGGAAAAAAAGTATATGGA GGTCACGCATAGCTTTTAATTTGGGTAGTGTATAAAGGAGAGAACTTTAATCGTCTATTACAAA ATGAGAACCAAATGACTCTTAGAGAAAGACAAGAAGAATGTTTGGGATACCTCTTTCTCAGCCT CGAAGAACTCTCCTTCAGTCTTCTTCTTTTTCTT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.420504113

Conservation Information
Conserved circRNAs	NA
PMCS	0.420504113

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							ath-miR5021 						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	ath-miR5021
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Philips et al., 2020

circRNA

Detail information of 1_circ_ag.9

Address

Any questions?

Supported by